Name: Shouchella miscanthi AK13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158863

Type strain:

Species: Shouchella miscanthi

Strain Designation: AK13

Culture col. no.: DSM 109981, KACC 21401

Strain history: <- B. Shin <- Y. Lee, Korea Univ., Seoul

NCBI tax ID(s): 2598861 (species)

SI-ID 406232

DSM 109981

Section

Shouchella miscanthi AK13 is a spore-forming, mesophilic, motile bacterium that was isolated from rhizosphere of Miscanthus sacchariflorus.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Shouchella*
	Species	**Shouchella miscanthi**
	Full Scientific Name (LPSN)	Shouchella miscanthi (Shin et al. 2020) Joshi et al. 2022

	Synonym	Bacillus miscanthi
	Synonym	Alkalihalobacillus miscanthi

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %92.503

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65685]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #65685]

Culture medium growth

[Ref.: #65685]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65685]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65685]			growth	30 °C

[Ref.: #65685]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.999
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65685]	Sample type/isolated from	rhizosphere of Miscanthus sacchariflorus
[Ref.: #65685]	Host species	Miscanthus sacchariflorus
[Ref.: #65685]	Geographic location (country and/or sea, region)	Seungbuk-Ku
[Ref.: #65685]	Country	Republic of Korea
[Ref.: #65685]	Country ISO 3 Code	KOR
[Ref.: #65685]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MN508905 (>99% sequence identity) for Alkalihalobacillus from Microbeatlas

Aquatic Samples	620
Soil Samples	2128
Animal Samples	2142
Plant Samples	604
Total Samples	5494

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65685]	Bacillus sp. (in: Bacteria) strain AK13 16S ribosomal RNA gene, partial sequence	MN508905	1549	ENA	2598861 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shouchella miscanthi AK13	GCA_007725405	chromosome	GenBank	2598861 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Alkalihalobacillus miscanthi AK13 NCBI: GCA_007725405.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Alkalihalobacillus miscanthi AK13 NCBI: GCA_007725405.1
[Ref.: #69480]	motile	yes	86.508	no
[Ref.: #69480]	flagellated	yes	57.954	no
[Ref.: #69480]	gram-positive	yes	90.963	no
[Ref.: #69480]	anaerobic	no	99.421	no
[Ref.: #69480]	aerobic	yes	94.995	no
[Ref.: #69480]	halophile	yes	92.867	no
[Ref.: #69480]	spore-forming	yes	94.485	no
[Ref.: #69480]	glucose-util	yes	91.766	no
[Ref.: #69480]	glucose-ferment	no	90.442	no
[Ref.: #69480]	thermophile	no	98.711	no

Availability in culture collections External links

[Ref.: #65685]

Culture collection no.

DSM 109981, KACC 21401

[Ref.: #111382]

SI-ID 406232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus miscanthi sp. nov., a alkaliphilic bacterium from the rhizosphere of Miscanthus sacchariflorus.	Shin B, Park C, Lee BH, Lee KE, Park W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003982	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65685

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 109981

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111382

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406232.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Shouchella miscanthi in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Alkalihalobacillus miscanthi AK13

Alkalihalobacillus miscanthi AK13

Change proposal

Change proposal