Arthrobacter ulcerisalmonis (DSM 107127, CIP 111621, LMG 30632)

Name: Arthrobacter ulcerisalmonis (DSM 107127, CIP 111621, LMG 30632)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158837

Type strain

Strain Designation T11b

Culture col. no. DSM 107127 CIP 111621 LMG 30632 CCM 8854 T11b

NCBI tax ID(s) 2483813

Special Collections DSMZ CIP

History DSMZ <- P. Kaempfer, Univ. Giessen, Germany; T11b <- R. Avendano-Herrera, Universidad Andrés Bello- Sede Vina del Mar;

Links

Arthrobacter ulcerisalmonis T11b is a bacterium that was isolated from Fish ulcer, Atlantic salmon .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399072

CIP 111621,DSM 107127

@ref 20215

Last LPSN update 2026-05-29 08:44:03

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Arthrobacter

Species Arthrobacter ulcerisalmonis

Full scientific name Arthrobacter ulcerisalmonis Kämpfer et al. 2020

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65659	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65659	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.659

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Other	#Wound
#Infection	#Inflammation	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65659	Fish ulcer, Atlantic salmon (farmed)	not kown	Chile	CHL	Middle and South America	-35.75	-71 -35.75/-71

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267948v1 assembly for Arthrobacter ulcerisalmonis CCM 8854	contig	GCA_042679485	2483813	71.14
124043	ASM4267652v1 assembly for Arthrobacter ulcerisalmonis CCM 8854	contig	GCA_042676525	2483813	51.76

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65659	Arthrobacter ulcerisalmonis strain T11b 16S ribosomal RNA gene, partial sequence	MK211245	1407		2483813

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4267948v1 assembly for Arthrobacter ulcerisalmonis CCM 8854
NCBI: GCA_042679485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.66	no
125439	gram_stain	BacteriaNetⓘ	positive	81.72	no
125439	motility	BacteriaNetⓘ	no	71.72	no
125439	spore_formation	BacteriaNetⓘ	no	85.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato.	Kampfer P, Busse HJ, Schumann P, Criscuolo A, Clermont D, Irgang R, Poblete-Morales M, Glaeser SP, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijsem.0.004002	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65659	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107127
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arthrobacter ulcerisalmonis (DSM 107127, CIP 111621, LMG 30632)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042679485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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