Name: Acidovorax kalamii KNDSW-TSA6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158808

Type strain:

Species: Acidovorax kalamii

Strain Designation: KNDSW-TSA6

Culture col. no.: MTCC 12652, KCTC 52819, VTCC B-910010

NCBI tax ID(s): 2004485 (species)

Section

Acidovorax kalamii KNDSW-TSA6 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from water sample from the river Ganges.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Acidovorax*
	Species	**Acidovorax kalamii**
	Full Scientific Name (LPSN)	Acidovorax kalamii Pal et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65571]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #65571]	Cell length	2.0-2.8 µm

[Ref.: #65571]	Cell width	0.71-0.76 µm

[Ref.: #65571]	Cell shape	rod-shaped

[Ref.: #65571]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %91.353

[Ref.: #65571]	Flagellum arrangement	polar

[Ref.: #65571]	Colony color	straw yellow
[Ref.: #65571]	Colony shape	circular
[Ref.: #65571]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65571]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #65571]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65571]			growth	20-37 °C
[Ref.: #65571]			optimum	30 °C

[Ref.: #65571]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65571]			optimum	7.0
[Ref.: #65571]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65571]

Oxygen tolerance

aerobe

[Ref.: #65571]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #65571]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65571]		NaCl		growth	0-0.5	%
[Ref.: #65571]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65571]	(S)-lactate ChEBI	+	growth
[Ref.: #65571]	1 % sodium lactate	+	growth
[Ref.: #65571]	2-hydroxybutyrate ChEBI	+	growth
[Ref.: #65571]	2-oxobutanoate ChEBI	+	growth
[Ref.: #65571]	2-oxoglutarate ChEBI	+	growth
[Ref.: #65571]	3-hydroxybutyrate ChEBI	+	growth
[Ref.: #65571]	acetate ChEBI	+	growth
[Ref.: #65571]	acetoacetate ChEBI	+	growth
[Ref.: #65571]	alpha-D-glucose ChEBI	+	growth
[Ref.: #65571]	arabinose ChEBI	+	builds acid from
[Ref.: #65571]	aztreonam ChEBI	+	growth
[Ref.: #65571]	bromosuccinate ChEBI	+	growth
[Ref.: #65571]	casein	-	hydrolysis
[Ref.: #65571]	cellobiose ChEBI	-	builds acid from
[Ref.: #65571]	cellobiose ChEBI	+	growth
[Ref.: #65571]	citrate ChEBI	-	growth
[Ref.: #65571]	citrate ChEBI	+	growth
[Ref.: #65571]	D-arabitol ChEBI	+	growth
[Ref.: #65571]	D-aspartate ChEBI	+	growth
[Ref.: #65571]	D-fructose ChEBI	+	growth
[Ref.: #65571]	D-fructose 6-phosphate ChEBI	+	growth
[Ref.: #65571]	D-fucose ChEBI	+	growth
[Ref.: #65571]	D-gluconate ChEBI	+	growth
[Ref.: #65571]	D-glucose 6-phosphate ChEBI	+	growth
[Ref.: #65571]	D-glucuronate ChEBI	+	growth
[Ref.: #65571]	D-malate ChEBI	+	growth
[Ref.: #65571]	D-saccharate ChEBI	+	growth
[Ref.: #65571]	D-serine ChEBI	-	oxidation
[Ref.: #65571]	D-sorbitol ChEBI	+	growth
[Ref.: #65571]	dextrin ChEBI	+	growth
[Ref.: #65571]	formate ChEBI	-	oxidation
[Ref.: #65571]	fructose ChEBI	+	builds acid from
[Ref.: #65571]	fusidate ChEBI	-	oxidation
[Ref.: #65571]	galactarate ChEBI	+	growth
[Ref.: #65571]	galactitol ChEBI	-	builds acid from
[Ref.: #65571]	galactose ChEBI	+	builds acid from
[Ref.: #65571]	gamma-aminobutyric acid ChEBI	-	oxidation
[Ref.: #65571]	gelatin ChEBI	+	growth
[Ref.: #65571]	gentiobiose ChEBI	-	oxidation
[Ref.: #65571]	glucose ChEBI	-	fermentation
[Ref.: #65571]	glucose ChEBI	+	builds acid from
[Ref.: #65571]	glycerol ChEBI	+	growth
[Ref.: #65571]	guanidinium chloride ChEBI	+	growth
[Ref.: #65571]	inulin ChEBI	-	builds acid from
[Ref.: #65571]	L-alanine ChEBI	+	growth
[Ref.: #65571]	L-aspartate ChEBI	+	growth
[Ref.: #65571]	L-fucose ChEBI	+	growth
[Ref.: #65571]	L-galactonic acid gamma-lactone ChEBI	+	growth
[Ref.: #65571]	L-glutamate ChEBI	+	growth
[Ref.: #65571]	L-malate ChEBI	+	growth
[Ref.: #65571]	L-pyroglutamic acid ChEBI	+	growth
[Ref.: #65571]	L-serine ChEBI	+	growth
[Ref.: #65571]	lactose ChEBI	-	builds acid from
[Ref.: #65571]	lactose ChEBI	-	oxidation
[Ref.: #65571]	lincomycin ChEBI	+	growth
[Ref.: #65571]	lithium chloride ChEBI	-	oxidation
[Ref.: #65571]	maltose ChEBI	-	builds acid from
[Ref.: #65571]	mannitol ChEBI	+	builds acid from
[Ref.: #65571]	mannose ChEBI	+	builds acid from
[Ref.: #65571]	melibiose ChEBI	-	builds acid from
[Ref.: #65571]	methyl (R)-lactate ChEBI	+	growth
[Ref.: #65571]	methyl beta-D-glucopyranoside ChEBI	+	growth
[Ref.: #65571]	methyl pyruvate ChEBI	-	oxidation
[Ref.: #65571]	minocycline ChEBI	-	oxidation
[Ref.: #65571]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65571]	myo-inositol ChEBI	+	growth
[Ref.: #65571]	N-acetyl-beta-D-mannosamine ChEBI	+	growth
[Ref.: #65571]	N-acetylgalactosamine ChEBI	+	growth
[Ref.: #65571]	N-acetylglucosamine ChEBI	+	growth
[Ref.: #65571]	nalidixic acid ChEBI	-	oxidation
[Ref.: #65571]	niaproof ChEBI	-	oxidation
[Ref.: #65571]	nitrate ChEBI	+	reduction
[Ref.: #65571]	pectin ChEBI	-	oxidation
[Ref.: #65571]	potassium tellurite ChEBI	+	growth
[Ref.: #65571]	propionate ChEBI	-	oxidation
[Ref.: #65571]	quinate ChEBI	+	growth
[Ref.: #65571]	raffinose ChEBI	-	builds acid from
[Ref.: #65571]	raffinose ChEBI	-	oxidation
[Ref.: #65571]	rhamnose ChEBI	-	builds acid from
[Ref.: #65571]	ribitol ChEBI	-	builds acid from
[Ref.: #65571]	rifamycin sv ChEBI	+	growth
[Ref.: #65571]	salicin ChEBI	-	builds acid from
[Ref.: #65571]	sodium bromate ChEBI	-	oxidation
[Ref.: #65571]	sodium butyrate ChEBI	-	oxidation
[Ref.: #65571]	stachyose ChEBI	+	growth
[Ref.: #65571]	starch ChEBI	-	hydrolysis
[Ref.: #65571]	sucrose ChEBI	-	builds acid from
[Ref.: #65571]	sucrose ChEBI	+	growth
[Ref.: #65571]	tetrazolium blue ChEBI	+	growth
[Ref.: #65571]	trehalose ChEBI	-	builds acid from
[Ref.: #65571]	trehalose ChEBI	-	oxidation
[Ref.: #65571]	troleandomycin ChEBI	-	oxidation
[Ref.: #65571]	turanose ChEBI	+	growth
[Ref.: #65571]	tween 40 ChEBI	+	growth
[Ref.: #65571]	vancomycin ChEBI	-	oxidation
[Ref.: #65571]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65571]		acetoin ChEBI	no
[Ref.: #65571]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #65571]		acetoin ChEBI	-
[Ref.: #65571]		glucose ChEBI		-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #65571]		catalase	-	1.11.1.6
[Ref.: #65571]		cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65571]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	49.5
C16:0	23.2
C18:1ω7c / C18:1ω6c	11.6
C12:0	5.9
C14:0	4.5
C16:0 N alcohol	2.4
C10:0 3OH	1.3
C18:3ω6c (6,9,12)	0.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65571]	Sample type/isolated from	water sample from the river Ganges
[Ref.: #65571]	Geographic location (country and/or sea, region)	Kanpur
[Ref.: #65571]	Country	India
[Ref.: #65571]	Country ISO 3 Code	IND
[Ref.: #65571]	Continent	Asia
[Ref.: #65571]	Geographic location	26.4153°/80.4517°
[Ref.: #65571]	Enrichment culture	TSA
[Ref.: #65571]	Enrichment culture duration	7 days
[Ref.: #65571]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY425604 (>99% sequence identity) for Acidovorax from Microbeatlas

Aquatic Samples	321
Soil Samples	88
Animal Samples	170
Plant Samples	33
Total Samples	612

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65571]	16S rRNA gene sequence	KY425604		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acidovorax kalamii KNDSW-TSA6	GCA_002245625	scaffold	GenBank	2004485 tax ID	*
[Ref.: #66792]	Acidovorax kalamii KNDSW-TSA6	2839292028	draft	JGI IMG/M	2004485 tax ID	*

[Ref.: #65571]

GC-content

65.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acidovorax kalamii KNDSW-TSA6 NCBI: GCA_002245625.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acidovorax kalamii KNDSW-TSA6 NCBI: GCA_002245625.1
[Ref.: #69480]	flagellated	yes	84.939	yes
[Ref.: #69480]	gram-positive	no	98.936	yes
[Ref.: #69480]	anaerobic	no	99.091	yes
[Ref.: #69480]	aerobic	yes	96.147	no
[Ref.: #69480]	halophile	no	95.662	yes
[Ref.: #69480]	spore-forming	no	95.175	yes
[Ref.: #69480]	glucose-util	yes	64.514	no
[Ref.: #69480]	thermophile	no	97.871	yes
[Ref.: #69480]	glucose-ferment	no	88.444	no
[Ref.: #69480]	motile	yes	90.803	yes

Availability in culture collections External links

[Ref.: #65571]

Culture collection no.

MTCC 12652, KCTC 52819, VTCC B-910010

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acidovorax kalamii sp. nov., isolated from a water sample of the river Ganges.	Pal D, Kaur N, Sudan SK, Bisht B, Krishnamurthi S, Mayilraj S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002736	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65571

Deepika Pal, Navjot Kaur, Sarabjeet Kour Sudan, Bhawana Bisht, Srinivasan Krishnamurthi and Shanmugam Mayilraj: Acidovorax kalamii sp. nov., isolated from a water sample of the river Ganges. IJSEM 68: 1719 - 1724 2018 ( DOI 10.1099/ijsem.0.002736 , PubMed 29616893 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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