Name: Streptomyces fuscigenes JBL-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158796

Type strain:

Species: Streptomyces fuscigenes

Strain Designation: JBL-20

Culture col. no.: KACC 18269, NBRC 110629

NCBI tax ID(s): 1528880 (species)

Section

Streptomyces fuscigenes JBL-20 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from bamboo litter.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces fuscigenes**
	Full Scientific Name (LPSN)	Streptomyces fuscigenes Lee and Whang 2018

Information on morphological and physiological properties Morphology

[Ref.: #65556]	Gram stain	positive

[Ref.: #65556]	Motility	no

[Ref.: #65556]	Multicellular complex forming ability	yes
[Ref.: #65556]	Multicellular complex name	aerial mycelium
[Ref.: #65556]	Multicellular complex color	white to dark grey
[Ref.: #65556]	Medium Name (multicellularity)	ISP 2 - ISP 5

[Ref.: #65556]	Multicellular complex forming ability	yes
[Ref.: #65556]	Multicellular complex name	substrate mycelium
[Ref.: #65556]	Multicellular complex color	ivory to black

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

Bennett's agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65556]		growth	4-30 °C
[Ref.: #65556]		optimum	28 °C
[Ref.: #65556]	no	growth	35-45 °C

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Temperature range

mesophilic

	Kind of pH		pH
[Ref.: #65556]		optimum	7.0-8.0
[Ref.: #65556]		growth	4.0-10.0
[Ref.: #65556]	no	growth	11.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65556]		NaCl		growth	0-3	%(w/v)
[Ref.: #65556]		NaCl	no	growth	4-7	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65556]	casein	+	hydrolysis
[Ref.: #65556]	cellulose ChEBI	+	hydrolysis
[Ref.: #65556]	D-fructose ChEBI	+	carbon source
[Ref.: #65556]	D-glucose ChEBI	+	carbon source
[Ref.: #65556]	D-mannitol ChEBI	+	carbon source
[Ref.: #65556]	D-rhamnose ChEBI	-	carbon source
[Ref.: #65556]	D-xylose ChEBI	-	carbon source
[Ref.: #65556]	gelatin ChEBI	-	hydrolysis
[Ref.: #65556]	nitrate ChEBI	+	reduction
[Ref.: #65556]	raffinose ChEBI	-	carbon source
[Ref.: #65556]	starch ChEBI	-	hydrolysis
[Ref.: #65556]	sucrose ChEBI	-	carbon source
[Ref.: #65556]	urea ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C15:0 iso	23.3
C15:0 anteiso	15.5
C14:0 iso	14.8
C18:1ω7c	14.7
C16:0 iso	12.5
C16:0	4
C17:0 iso	2.2
C14:0	1.6
C15:0	1.4
C17:1 anteiso ω9c	1.3
C17:0 anteiso	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65556]	Sample type/isolated from	bamboo (Sasa borealis) litter
[Ref.: #65556]	Geographic location (country and/or sea, region)	Damyang, Jeonnam
[Ref.: #65556]	Country	Republic of Korea
[Ref.: #65556]	Country ISO 3 Code	KOR
[Ref.: #65556]	Continent	Asia
[Ref.: #65556]	Enrichment culture	Bennett's agar
[Ref.: #65556]	Enrichment culture composition	supplemented with cycloheximide (50 µg/ml) and nalidixic acid (20 µg/ml) at pH 5.5
[Ref.: #65556]	Enrichment culture duration	14 days
[Ref.: #65556]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Host Body Product	#Plant	#Plant litter (Forest)
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

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Global distribution of 16S sequence AB980255 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	4
Soil Samples	39
Animal Samples	7
Plant Samples	4
Total Samples	54

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65556]	16S rRNA gene sequence	AB980255		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces fuscigenes JBL-20	GCA_021556455	contig	GenBank	1528880 tax ID	*

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GC-content

72.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces fuscigenes JBL-20 NCBI: GCA_021556455.1
[Ref.: #69480]	flagellated	no	97.976	yes
[Ref.: #69480]	gram-positive	yes	87.835	no
[Ref.: #69480]	anaerobic	no	99.326	no
[Ref.: #69480]	aerobic	yes	94.225	yes
[Ref.: #69480]	halophile	no	93.735	no
[Ref.: #69480]	spore-forming	yes	92.836	yes
[Ref.: #69480]	motile	no	95.635	yes
[Ref.: #69480]	glucose-ferment	no	89.01	no
[Ref.: #69480]	thermophile	no	98.578	yes
[Ref.: #69480]	glucose-util	yes	90.835	no

Availability in culture collections External links

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Culture collection no.

KACC 18269, NBRC 110629

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces montanisoli sp. nov., exhibiting antimicrobial activity, isolated from mountain soil around a decaying tree.	Lee JH, Jeong JW, Lee DH, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005315	2022	*
Phylogeny	Streptomyces fuscigenes sp. nov., isolated from bamboo (Sasa borealis) litter.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.002706	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65556

Hyo-Jin Lee and Kyung-Sook Whang: Streptomyces fuscigenes sp. nov., isolated from bamboo (Sasa borealis) litter. IJSEM 68: 1541 - 1545 2018 ( DOI 10.1099/ijsem.0.002706 , PubMed 29537363 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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