Name: Hanstruepera ponticola MM-14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158791

Type strain:

Species: Hanstruepera ponticola

Strain Designation: MM-14

Culture col. no.: KACC 19434, KCTC 62139, NBRC 113019

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 2042995 (species)

Section

Hanstruepera ponticola MM-14 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from seawater.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Hanstruepera*
	Species	**Hanstruepera ponticola**
	Full Scientific Name (LPSN)	Hanstruepera ponticola (Park et al. 2018) Huang et al. 2022

	Synonym	Pseudobizionia ponticola
	Synonym	Hanstruepera crassostreae

Information on morphological and physiological properties Morphology

[Ref.: #65549]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65549]	Cell length	0.5-10.0 µm

[Ref.: #65549]	Cell width	0.2-0.6 µm

[Ref.: #65549]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #65549]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #65549]	Colony size	0.5-1.0 mm
[Ref.: #65549]	Colony color	strong yellow
[Ref.: #65549]	Colony shape	circular
[Ref.: #65549]	Incubation period	5 days
[Ref.: #65549]	Cultivation medium used	MA

[Ref.: #65549]	Pigment production	no
[Ref.: #65549]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65549]

Culture medium

Marine agar (MA)

[Ref.: #65549]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65549]		optimum	30 °C
[Ref.: #65549]		growth	10-37 °C
[Ref.: #65549]	no	growth	4 °C
[Ref.: #65549]	no	growth	40 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #65549]	Temperature range	mesophilic
[Ref.: #65549]	Temperature range	psychrophilic
[Ref.: #65549]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #65549]		optimum	7.0-8.0
[Ref.: #65549]		growth	5.5
[Ref.: #65549]	no	growth	5.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65549]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65549]

Ability of spore formation

	Salt	Tested relation		Salt conc.
[Ref.: #65549]	NaCl		growth	0.5-6.0	%(w/v)
[Ref.: #65549]	NaCl		optimum	2.0	%(w/v)
[Ref.: #65549]	MgCl2	no	growth	0	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65549]	acetate ChEBI	-	carbon source
[Ref.: #65549]	acetate ChEBI	-	energy source
[Ref.: #65549]	benzoate ChEBI	-	carbon source
[Ref.: #65549]	benzoate ChEBI	-	energy source
[Ref.: #65549]	casein	+	hydrolysis
[Ref.: #65549]	cellobiose ChEBI	-	carbon source
[Ref.: #65549]	cellobiose ChEBI	-	energy source
[Ref.: #65549]	citrate ChEBI	-	carbon source
[Ref.: #65549]	citrate ChEBI	-	energy source
[Ref.: #65549]	D-fructose ChEBI	-	carbon source
[Ref.: #65549]	D-fructose ChEBI	-	energy source
[Ref.: #65549]	D-galactose ChEBI	-	carbon source
[Ref.: #65549]	D-galactose ChEBI	-	energy source
[Ref.: #65549]	D-glucose ChEBI	-	carbon source
[Ref.: #65549]	D-glucose ChEBI	-	energy source
[Ref.: #65549]	D-mannose ChEBI	-	carbon source
[Ref.: #65549]	D-mannose ChEBI	-	energy source
[Ref.: #65549]	D-xylose ChEBI	-	carbon source
[Ref.: #65549]	D-xylose ChEBI	-	energy source
[Ref.: #65549]	esculin ChEBI	-	hydrolysis
[Ref.: #65549]	formate ChEBI	-	carbon source
[Ref.: #65549]	formate ChEBI	-	energy source
[Ref.: #65549]	gelatin ChEBI	+	hydrolysis
[Ref.: #65549]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #65549]	L-arabinose ChEBI	-	carbon source
[Ref.: #65549]	L-arabinose ChEBI	-	energy source
[Ref.: #65549]	L-glutamate ChEBI	-	carbon source
[Ref.: #65549]	L-glutamate ChEBI	-	energy source
[Ref.: #65549]	L-malate ChEBI	-	carbon source
[Ref.: #65549]	L-malate ChEBI	-	energy source
[Ref.: #65549]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #65549]	maltose ChEBI	-	carbon source
[Ref.: #65549]	maltose ChEBI	-	energy source
[Ref.: #65549]	nitrate ChEBI	-	reduction
[Ref.: #65549]	pyruvate ChEBI	-	carbon source
[Ref.: #65549]	pyruvate ChEBI	-	energy source
[Ref.: #65549]	salicin ChEBI	-	carbon source
[Ref.: #65549]	salicin ChEBI	-	energy source
[Ref.: #65549]	starch ChEBI	-	hydrolysis
[Ref.: #65549]	succinate ChEBI	-	carbon source
[Ref.: #65549]	succinate ChEBI	-	energy source
[Ref.: #65549]	sucrose ChEBI	-	carbon source
[Ref.: #65549]	sucrose ChEBI	-	energy source
[Ref.: #65549]	trehalose ChEBI	-	carbon source
[Ref.: #65549]	trehalose ChEBI	-	energy source
[Ref.: #65549]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65549]	urea ChEBI	-	hydrolysis
[Ref.: #65549]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65549]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #65549]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65549]	cephalothin ChEBI	yes	30	µg (disc)
[Ref.: #65549]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #65549]	gentamicin ChEBI				yes	30	µg (disc)
[Ref.: #65549]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #65549]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #65549]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #65549]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #65549]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #65549]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #65549]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #65549]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #65549]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65549]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65549]	acid phosphatase	+	3.1.3.2
[Ref.: #65549]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65549]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65549]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65549]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65549]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65549]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65549]	beta-galactosidase	-	3.2.1.23
[Ref.: #65549]	beta-glucosidase	-	3.2.1.21
[Ref.: #65549]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65549]	catalase	+	1.11.1.6
[Ref.: #65549]	cystine arylamidase	+	3.4.11.3
[Ref.: #65549]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65549]	esterase (C 4)	+
[Ref.: #65549]	esterase Lipase (C 8)	+
[Ref.: #65549]	leucine arylamidase	+	3.4.11.1
[Ref.: #65549]	lipase (C 14)	-
[Ref.: #65549]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65549]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65549]	trypsin	+	3.4.21.4
[Ref.: #65549]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65549]

Fatty acid	Percentage
C15:0 iso	25.3
C15:1 iso G	22
C17:0 iso 3OH	18.6
C16:1ω7c / C16:1ω6c	9.8
C15:0 iso 3OH	6.4
C16:0	3.2
C16:0 iso 3OH	2.1
C16:0 iso	1.6
C16:0 3OH	1.5
C15:0 anteiso	1.3

Metadata FA analysis

Reference

[Ref.: #65549]

Fatty acid	Percentage
C15:0 iso	22.5
iso-C15:0 G	21.6
C17:0 iso 3OH	19.1
C16:1ω7c / C16:1ω6c	11.7
C15:0 iso 3OH	7.1
C16:0 iso 3OH	2.5
C16:0	2.5
C16:0 iso	1.6
C16:0 3OH	1.4
C15:0 anteiso	1.3
C15:0 2OH	1.2

Metadata FA analysis

Reference

[Ref.: #65549]

Fatty acid	Percentage
C15:0 iso	21
C17:0 iso 3OH	17.8
C15:1 iso G	17.7
C16:1ω7c / C16:1ω6c	9.4
C15:0 iso 3OH	7.3
C16:0	3.8
C16:0 iso 3OH	3.4
C15:0 anteiso	3.3
C16:0 iso	2.2
C17:0 2OH	1.8
C15:1 anteiso A	1.7
C16:0 3OH	1.6
C15:0 2OH	1.6
C16:1 iso G	1.4
C14:0 iso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65549]	Sample type/isolated from	seawater
[Ref.: #65549]	Geographic location (country and/or sea, region)	Mallipo, Yellow Sea
[Ref.: #65549]	Country	Republic of Korea
[Ref.: #65549]	Country ISO 3 Code	KOR
[Ref.: #65549]	Continent	Asia
[Ref.: #65549]	Geographic location	36.7878°/126.1420°
[Ref.: #65549]	Enrichment culture	MA
[Ref.: #65549]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Manlipo Port, Yellow Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.7878°/126.1420°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65549]	16S rRNA gene sequence	MG052919		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hanstruepera ponticola MM-14	GCA_012931685	contig	GenBank	2042995 tax ID	*
[Ref.: #66792]	Pseudobizionia ponticola strain MM-14	2042995.3	wgs	PATRIC	2042995 tax ID	*
[Ref.: #66792]	Pseudobizionia ponticola MM-14	2886795137	draft	JGI IMG/M	2042995 tax ID	*

[Ref.: #65549]	GC-content	34.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	34.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudobizionia ponticola strain MM-14 PATRIC: 2042995.3
[Ref.: #69480]	motile	no	89.335	no
[Ref.: #69480]	gram-positive	no	98.148	no
[Ref.: #69480]	anaerobic	no	99.052	no
[Ref.: #69480]	aerobic	yes	91.302	no
[Ref.: #69480]	halophile	no	65.061	no
[Ref.: #69480]	spore-forming	no	96.483	yes
[Ref.: #69480]	glucose-util	yes	83.839	no
[Ref.: #69480]	flagellated	no	96.072	yes
[Ref.: #69480]	thermophile	no	99.378	no
[Ref.: #69480]	glucose-ferment	no	90.805	no

Availability in culture collections External links

[Ref.: #65549]

Culture collection no.

KACC 19434, KCTC 62139, NBRC 113019

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudobizionia ponticola gen. nov., sp. nov., isolated from seawater.	Park S, Choi J, Choi SJ, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002691	2018	*
Phylogeny	Hanstruepera crassostreae He et al. 2018 is a later heterotypic synonym of Pseudobizionia ponticola Park et al. 2018 and transfer of Pseudobizionia ponticola to the genus Hanstruepera as Hanstruepera ponticola comb. nov.	Huang Z, Du Y, Lai Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.005257	2022	*
Phylogeny	Hanstruepera crassostreae He et al. 2018 is a later heterotypic synonym of Pseudobizionia ponticola Park et al. 2018.	Pei J, Wu Y, Gao Y, Li S, Fang J, Wei Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.005074	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65549

Sooyeon Park, Jeehyun Choi, Su Jung Choi and Jung-Hoon Yoon: Pseudobizionia ponticola gen. nov., sp. nov., isolated from seawater. IJSEM 68: 1467 - 1473 2018 ( DOI 10.1099/ijsem.0.002691 , PubMed 29521613 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Pseudobizionia ponticola strain MM-14

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