Name: Amycolatopsis silviterrae C12CA1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158790

Type strain:

Species: Amycolatopsis silviterrae

Strain Designation: C12CA1

Culture col. no.: TBRC 1456, NBRC 111116

NCBI tax ID(s): 1656914 (species)

Section

Amycolatopsis silviterrae C12CA1 is an aerobe, spore-forming, Gram-positive bacterium that builds a substrate mycelium and has a greenish-yellow pigmentation.

Gram-positive
pigmented
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis silviterrae**
	Full Scientific Name (LPSN)	Amycolatopsis silviterrae Jamjan et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65547]	Gram stain	positive

[Ref.: #65547]	Cell shape	rod-shaped

[Ref.: #65547]	Pigment production	yes
[Ref.: #65547]	Pigmentation color	greenish-yellow

[Ref.: #65547]	Multicellular complex forming ability	yes
[Ref.: #65547]	Multicellular complex name	substrate mycelium
[Ref.: #65547]	Multicellular complex color	yellowish-brown

[Ref.: #65547]	Multicellular complex forming ability	yes
[Ref.: #65547]	Multicellular complex name	aerial mycelium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65547]			growth	15-40 °C
[Ref.: #65547]			optimum	25-30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65547]			optimum	7-10
[Ref.: #65547]			growth	5-12

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #65547]	Spore description	greenish-yellow aerial spore
[Ref.: #65547]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65547]		NaCl		growth	0-7	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65547]	adenine ChEBI	-	hydrolysis
[Ref.: #65547]	casein	+	hydrolysis
[Ref.: #65547]	cellobiose ChEBI	+	carbon source
[Ref.: #65547]	cellulose ChEBI	-	hydrolysis
[Ref.: #65547]	chitin ChEBI	-	hydrolysis
[Ref.: #65547]	D-fructose ChEBI	+	carbon source
[Ref.: #65547]	D-galactose ChEBI	+	carbon source
[Ref.: #65547]	D-mannitol ChEBI	+	carbon source
[Ref.: #65547]	D-ribose ChEBI	+	carbon source
[Ref.: #65547]	D-xylose ChEBI	+	carbon source
[Ref.: #65547]	glycerol ChEBI	-	carbon source
[Ref.: #65547]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #65547]	L-arabinose ChEBI	+	carbon source
[Ref.: #65547]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65547]	lactose ChEBI	+	carbon source
[Ref.: #65547]	mannose ChEBI	+	carbon source
[Ref.: #65547]	melibiose ChEBI	-	carbon source
[Ref.: #65547]	myo-inositol ChEBI	+	carbon source
[Ref.: #65547]	nitrate ChEBI	-	reduction
[Ref.: #65547]	raffinose ChEBI	+	carbon source
[Ref.: #65547]	salicin ChEBI	+	carbon source
[Ref.: #65547]	sorbitol ChEBI	-	carbon source
[Ref.: #65547]	sorbose ChEBI	-	carbon source
[Ref.: #65547]	starch ChEBI	-	hydrolysis
[Ref.: #65547]	sucrose ChEBI	-	carbon source
[Ref.: #65547]	trehalose ChEBI	-	carbon source
[Ref.: #65547]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65547]	xanthine ChEBI	+	hydrolysis
[Ref.: #65547]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65547]	acid phosphatase	+	3.1.3.2
[Ref.: #65547]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65547]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65547]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65547]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65547]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65547]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65547]	beta-galactosidase	+	3.2.1.23
[Ref.: #65547]	beta-glucosidase	-	3.2.1.21
[Ref.: #65547]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65547]	cystine arylamidase	+	3.4.11.3
[Ref.: #65547]	esterase (C 4)	+
[Ref.: #65547]	esterase Lipase (C 8)	+
[Ref.: #65547]	leucine arylamidase	+	3.4.11.1
[Ref.: #65547]	lipase (C 14)	-
[Ref.: #65547]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65547]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65547]	trypsin	+	3.4.21.4
[Ref.: #65547]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0	27.9
C15:0 iso	24.2
C16:0 iso	17.5
C16:1ω7c / C16:1ω6c	7.7
C17:0 iso	6.3
C17:0	2.5
C17:0 anteiso	2.3
C14:0 iso	2.3
C18:0	1.7
C15:0 anteiso	1.6
C14:0	1.5
C16:0 anteiso	0.9
C15:1ω6c	0.8
C16:0 10-methyl / iso-C17:1ω9c	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65547]	Sample type/isolated from	forest soil
[Ref.: #65547]	Geographic location (country and/or sea, region)	Chulabhorn dam, Chaiyaphum Province
[Ref.: #65547]	Country	Thailand
[Ref.: #65547]	Country ISO 3 Code	THA
[Ref.: #65547]	Continent	Asia
[Ref.: #65547]	Enrichment culture	actinomycetes isolation agar
[Ref.: #65547]	Enrichment culture composition	4 g sodium propionate, 2 g sodium caseinate, 0.5 g K2HPO4, 0.1 g asparagine, 0.1 g MgSO4 . 7H2O, 1 g FeSO4 . 7H2O, 5 ml glycerol, 15 g agar and 1 l distilled water supplemented with cycloheimide (50 mg/l) and nalidixic acid (50 mg/l).
[Ref.: #65547]	Enrichment culture duration	3-4 weeks
[Ref.: #65547]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65547]	16S rRNA gene sequence	KR818707		GenBank

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GC-content

69.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

TBRC 1456, NBRC 111116

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis silviterrae sp. nov., isolated from forest soil.	Jamjan W, Suriyachadkun C, Tanasupawat S, Sakai K, Tashiro Y, Okugawa Y, Tongpim S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002687	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65547

Winai Jamjan, Chanwit Suriyachadkun, Somboon Tanasupawat, Kenji Sakai, Yukihiro Tashiro, Yuki Okugawa and Saowanit Tongpim: Amycolatopsis silviterrae sp. nov., isolated from forest soil. IJSEM 68: 1455 - 1460 2018 ( DOI 10.1099/ijsem.0.002687 , PubMed 29533177 )

* These data were automatically processed and therefore are not curated

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