Name: Polaromonas ginsengisoli LMG 23393
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158788

Type strain:

Species: Polaromonas ginsengisoli

Culture col. no.: LMG 23393, KCTC 12577, Gsoil 115, CCUG 52466

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363842 (species)

Section

Polaromonas ginsengisoli LMG 23393 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from ginseng field soil.

colony-forming
Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Polaromonas*
	Species	**Polaromonas ginsengisoli**
	Full Scientific Name (LPSN)	Polaromonas ginsengisoli Choi et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65544]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65544]	Cell length	1.2-3.0 µm

[Ref.: #65544]	Cell width	0.4-1 µm

[Ref.: #65544]	Cell shape	rod-shaped

[Ref.: #65544]	Motility	no

[Ref.: #65544]	Colony size	2-3.5 mm
[Ref.: #65544]	Colony color	milky-white
[Ref.: #65544]	Colony shape	circular
[Ref.: #65544]	Incubation period	2 days
[Ref.: #65544]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65544]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65544]

Culture medium growth

		Temperature
[Ref.: #65544]	growth	10-30 °C
[Ref.: #65544]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #65544]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65544]			optimum	7.0
[Ref.: #65544]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65544]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65544]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65544]		NaCl		growth	0-2	%(w/v)
[Ref.: #65544]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65544]	2-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #65544]	3-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #65544]	3-hydroxybutyrate ChEBI	+	assimilation
[Ref.: #65544]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #65544]	5-dehydro-D-gluconate ChEBI	+	assimilation
[Ref.: #65544]	acetate ChEBI	-	assimilation
[Ref.: #65544]	citrate ChEBI	-	assimilation
[Ref.: #65544]	citrate ChEBI	+	assimilation
[Ref.: #65544]	D-glucose ChEBI	-	assimilation
[Ref.: #65544]	D-glucose ChEBI	+	assimilation
[Ref.: #65544]	D-mannitol ChEBI	-	assimilation
[Ref.: #65544]	D-mannose ChEBI	-	assimilation
[Ref.: #65544]	D-ribose ChEBI	-	assimilation
[Ref.: #65544]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65544]	decanoate ChEBI	-	assimilation
[Ref.: #65544]	gelatin ChEBI	-	hydrolysis
[Ref.: #65544]	glycogen ChEBI	-	assimilation
[Ref.: #65544]	itaconate ChEBI	-	assimilation
[Ref.: #65544]	L-alanine ChEBI	+	assimilation
[Ref.: #65544]	L-arabinose ChEBI	-	assimilation
[Ref.: #65544]	L-arabinose ChEBI	+	assimilation
[Ref.: #65544]	L-fucose ChEBI	-	assimilation
[Ref.: #65544]	L-histidine ChEBI	+	assimilation
[Ref.: #65544]	L-proline ChEBI	+	assimilation
[Ref.: #65544]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65544]	L-serine ChEBI	-	assimilation
[Ref.: #65544]	lactate ChEBI	+	assimilation
[Ref.: #65544]	malate ChEBI	+	assimilation
[Ref.: #65544]	malonate ChEBI	-	assimilation
[Ref.: #65544]	maltose ChEBI	-	assimilation
[Ref.: #65544]	melibiose ChEBI	-	assimilation
[Ref.: #65544]	myo-inositol ChEBI	-	assimilation
[Ref.: #65544]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65544]	nitrate ChEBI	-	reduction
[Ref.: #65544]	phenylacetate ChEBI	-	assimilation
[Ref.: #65544]	propionate ChEBI	+	assimilation
[Ref.: #65544]	salicin ChEBI	-	assimilation
[Ref.: #65544]	suberic acid ChEBI	-	assimilation
[Ref.: #65544]	sucrose ChEBI	-	assimilation
[Ref.: #65544]	valerate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65544]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65544]	acid phosphatase	-	3.1.3.2
[Ref.: #65544]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65544]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65544]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65544]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65544]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65544]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65544]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65544]	beta-galactosidase	-	3.2.1.23
[Ref.: #65544]	beta-glucosidase	-	3.2.1.21
[Ref.: #65544]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65544]	cystine arylamidase	-	3.4.11.3
[Ref.: #65544]	esterase	+/-
[Ref.: #65544]	esterase Lipase (C 8)	+/-
[Ref.: #65544]	leucine arylamidase	+	3.4.11.1
[Ref.: #65544]	lipase	-
[Ref.: #65544]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65544]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65544]	trypsin	-	3.4.21.4
[Ref.: #65544]	urease	-	3.5.1.5
[Ref.: #65544]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65544]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	47.4
C16:0	39.7
C18:1ω7c	7
C17:0 cyclo	2.4
C18:0	1.1
C18:2ω6,9 / ante-C18:0	0.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65544]	Sample type/isolated from	ginseng field soil
[Ref.: #65544]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #65544]	Country	Republic of Korea
[Ref.: #65544]	Country ISO 3 Code	KOR
[Ref.: #65544]	Continent	Asia
[Ref.: #65544]	Enrichment culture	R2A
[Ref.: #65544]	Enrichment culture duration	7 days
[Ref.: #65544]	Enrichment culture temperature	30 ̊C

[Ref.: #67771]	Sample type/isolated from	From soil of the ginseng field
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65544]	16S rRNA gene sequence	AB245355		GenBank

[Ref.: #65544]

GC-content

60.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65544]

Culture collection no.

LMG 23393, KCTC 12577, Gsoil 115, CCUG 52466

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaromonas ginsengisoli sp. nov., isolated from ginseng field soil.	Choi KD, Siddiqi MZ, Liu Q, Jo JH, Chun SY, Choi GM, Kim SY, Lee SY, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.002669	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65544

Kang Duk Choi, Muhammad Zubair Siddiqi, Qingmei Liu, Jung Hun Jo, Se Yoon Chun, Gyu-Min Choi, Sang Young Kim, Soon Youl Lee and Wan-Taek Im: Polaromonas ginsengisoli sp. nov., isolated from ginseng field soil. IJSEM 68: 1436 - 1441 2018 ( DOI 10.1099/ijsem.0.002669 , PubMed 29620504 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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