Polaromonas ginsengisoli (LMG 23393, KCTC 12577, Gsoil 115)

Name: Polaromonas ginsengisoli (LMG 23393, KCTC 12577, Gsoil 115)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158788

Type strain

Culture col. no. LMG 23393 KCTC 12577 Gsoil 115 CCUG 52466

NCBI tax ID(s) 363842

Special Collections CCUG KCTC Literature strains

Links

Polaromonas ginsengisoli LMG 23393 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from ginseng field soil.

Gram-negative rod-shaped colony-forming obligate aerobe 16S sequence

Name and taxonomic classification

SI-ID 272599

LMG 23393,KCTC 12577

@ref 20215

Last LPSN update 2025-12-16 10:08:06

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Polaromonas

Species Polaromonas ginsengisoli

Full scientific name Polaromonas ginsengisoli Choi et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
65544	negative	1.2-3.0 µm	0.4-1 µm	rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65544	2-3.5 mm	milky-white	circular	2 days	R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth
65544	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
65544	positive	growth	10-30
65544	positive	optimum	30
67771	positive	growth	30

Culture pH

@ref	Ability	Type	PH
65544	positive	optimum	7.0
65544	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65544	obligate aerobe
67771	aerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65544	NaCl	positive	growth	0-2 %(w/v)
65544	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65544	16808 ChEBI	2-dehydro-D-gluconate	+	assimilation
65544	16193 ChEBI	3-hydroxybenzoate	+	assimilation
65544	37054 ChEBI	3-hydroxybutyrate	+	assimilation
65544	17879 ChEBI	4-hydroxybenzoate	+	assimilation
65544	58143 ChEBI	5-dehydro-D-gluconate	+	assimilation
65544	30089 ChEBI	acetate	-	assimilation
65544	16947 ChEBI	citrate	-	assimilation
65544	16947 ChEBI	citrate	+	assimilation
65544	17634 ChEBI	D-glucose	-	assimilation
65544	17634 ChEBI	D-glucose	+	assimilation
65544	16899 ChEBI	D-mannitol	-	assimilation
65544	16024 ChEBI	D-mannose	-	assimilation
65544	16988 ChEBI	D-ribose	-	assimilation
65544	17924 ChEBI	D-sorbitol	-	assimilation
65544	27689 ChEBI	decanoate	-	assimilation
65544	5291 ChEBI	gelatin	-	hydrolysis
65544	28087 ChEBI	glycogen	-	assimilation
65544	17240 ChEBI	itaconate	-	assimilation
65544	16977 ChEBI	L-alanine	+	assimilation
65544	30849 ChEBI	L-arabinose	-	assimilation
65544	30849 ChEBI	L-arabinose	+	assimilation
65544	18287 ChEBI	L-fucose	-	assimilation
65544	15971 ChEBI	L-histidine	+	assimilation
65544	17203 ChEBI	L-proline	+	assimilation
65544	62345 ChEBI	L-rhamnose	-	assimilation
65544	17115 ChEBI	L-serine	-	assimilation
65544	24996 ChEBI	lactate	+	assimilation
65544	25115 ChEBI	malate	+	assimilation
65544	15792 ChEBI	malonate	-	assimilation
65544	17306 ChEBI	maltose	-	assimilation
65544	28053 ChEBI	melibiose	-	assimilation
65544	17268 ChEBI	myo-inositol	-	assimilation
65544	506227 ChEBI	N-acetylglucosamine	-	assimilation
65544	17632 ChEBI	nitrate	-	reduction
65544	18401 ChEBI	phenylacetate	-	assimilation
65544	17272 ChEBI	propionate	+	assimilation
65544	17814 ChEBI	salicin	-	assimilation
65544	9300 ChEBI	suberic acid	-	assimilation
65544	17992 ChEBI	sucrose	-	assimilation
65544	31011 ChEBI	valerate	+	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65544	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65544	acid phosphatase	-	3.1.3.2
65544	alkaline phosphatase	+	3.1.3.1
65544	alpha-chymotrypsin	-	3.4.21.1
65544	alpha-fucosidase	-	3.2.1.51
65544	alpha-galactosidase	-	3.2.1.22
65544	alpha-glucosidase	-	3.2.1.20
65544	alpha-mannosidase	-	3.2.1.24
65544	arginine dihydrolase	-	3.5.3.6
65544	beta-galactosidase	-	3.2.1.23
65544	beta-glucosidase	-	3.2.1.21
65544	beta-glucuronidase	-	3.2.1.31
65544	cystine arylamidase	-	3.4.11.3
65544	esterase	+/-
65544	esterase Lipase (C 8)	+/-
65544	leucine arylamidase	+	3.4.11.1
65544	lipase	-
65544	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65544	naphthol-AS-BI-phosphohydrolase	+
65544	trypsin	-	3.4.21.4
65544	urease	-	3.5.1.5
65544	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

65544

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	47.4
C16:0	39.7
C18:1ω7c	7
C17:0 cyclo	2.4
C18:0	1.1
C18:2ω6,9 / ante-C18:0	0.8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
65544	ginseng field soil	Pocheon Province	Republic of Korea	KOR	Asia	R2A	7 days	30
67771	From soil of the ginseng field		Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
65544	Polaromonas ginsengisoli gene for 16S rRNA, partial sequence, strain: Gsoil 115	AB245355

GC content

@ref	GC-content (mol%)	Method
65544	60.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Title	Authors	Journal	DOI	Year
Agronomic strategies to enhance the early vigor and yield of maize. Part I: the role of seed applied biostimulant, hybrid and starter fertilization on rhizosphere bacteria profile and diversity.	Ujvari G, Capo L, Grassi A, Cristani C, Pagliarani I, Turrini A, Blandino M, Giovannetti M, Agnolucci M.	Front Plant Sci	10.3389/fpls.2023.1240310	2023
Bacterial Community of Breast Milk in Breastfeeding Women Using Culture-Dependent and Culture-Independent Approaches.	Lee S, Heo S, Park MK, Sung MH, Jeong DW.	J Microbiol Biotechnol	10.4014/jmb.2407.07001	2024
Three Phages from a Boreal Lake during Ice Cover Infecting Xylophilus, Caulobacter, and Polaromonas Species.	Laanto E, Oksanen HM.	Viruses	10.3390/v15020307	2023
Polaromonas ginsengisoli sp. nov., isolated from ginseng field soil.	Choi KD, Siddiqi MZ, Liu Q, Jo JH, Chun SY, Choi GM, Kim SY, Lee SY, Im WT	Int J Syst Evol Microbiol	10.1099/ijsem.0.002669	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65544	Kang Duk Choi, Muhammad Zubair Siddiqi, Qingmei Liu, Jung Hun Jo, Se Yoon Chun, Gyu-Min Choi, Sang Young Kim, Soon Youl Lee and Wan-Taek Im: Polaromonas ginsengisoli sp. nov., isolated from ginseng field soil. IJSEM 68: 1436 - 1441 2018 ( DOI 10.1099/ijsem.0.002669 , PubMed 29620504 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Polaromonas ginsengisoli (LMG 23393, KCTC 12577, Gsoil 115)

Name and taxonomic classification