Name: Roseateles noduli HZ7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158764

Type strain:

Species: Roseateles noduli

Strain Designation: HZ7

Culture col. no.: JCM 31671, CCTCC AB 2014353

Strain history: Y. Lin; Northwest A&F Univ., China; HZ7.

NCBI tax ID(s): 2052484 (species)

Section

Roseateles noduli HZ7 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from root nodules of Robinia pseudoacacia in a lead-zinc mine.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Roseateles*
	Species	**Roseateles noduli**
	Full Scientific Name (LPSN)	Roseateles noduli (Fan et al. 2018) Liu et al. 2023

Synonym

Mitsuaria noduli

Information on morphological and physiological properties Morphology

[Ref.: #65517]	Gram stain	negative

[Ref.: #65517]	Cell length	1.5-2 µm

[Ref.: #65517]	Cell width	0.3 µm

[Ref.: #65517]	Cell shape	rod-shaped

[Ref.: #65517]	Motility	yes

[Ref.: #65517]	Flagellum arrangement	monopolar

[Ref.: #65517]	Colony size	2-5 mm
[Ref.: #65517]	Colony color	white
[Ref.: #65517]	Colony shape	circular
[Ref.: #65517]	Incubation period	2 days
[Ref.: #65517]	Cultivation medium used	YMA

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

YMA

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

		Temperature
[Ref.: #65517]	growth	4-45 °C
[Ref.: #65517]	optimum	25-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #65517]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65517]			optimum	7-8
[Ref.: #65517]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65517]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65517]	2-hydroxybutyrate ChEBI	+	energy source
[Ref.: #65517]	2-oxobutanoate ChEBI	+	energy source
[Ref.: #65517]	2-oxoglutarate ChEBI	+	energy source
[Ref.: #65517]	2-oxopentanoate ChEBI	+	energy source
[Ref.: #65517]	4-hydroxy-L-proline ChEBI	+	energy source
[Ref.: #65517]	4-hydroxybutyrate ChEBI	+	energy source
[Ref.: #65517]	acetate ChEBI	+	energy source
[Ref.: #65517]	adipate ChEBI	+	assimilation
[Ref.: #65517]	alpha-D-glucose ChEBI	+	energy source
[Ref.: #65517]	arabinose ChEBI	-	assimilation
[Ref.: #65517]	asparagine ChEBI	+	energy source
[Ref.: #65517]	bromosuccinate ChEBI	+	energy source
[Ref.: #65517]	cellobiose ChEBI	+	energy source
[Ref.: #65517]	chitosan ChEBI	+	degradation
[Ref.: #65517]	cis-aconitate ChEBI	+	energy source
[Ref.: #65517]	citrate ChEBI	+	assimilation
[Ref.: #65517]	citrate ChEBI	+	energy source
[Ref.: #65517]	D-alanine ChEBI	+	energy source
[Ref.: #65517]	D-gluconate ChEBI	+	energy source
[Ref.: #65517]	D-glucosaminic acid ChEBI	+	energy source
[Ref.: #65517]	D-mannose ChEBI	+	energy source
[Ref.: #65517]	D-serine ChEBI	+	energy source
[Ref.: #65517]	decanoate ChEBI	-	assimilation
[Ref.: #65517]	formate ChEBI	+	energy source
[Ref.: #65517]	fucoidan ChEBI	-	assimilation
[Ref.: #65517]	galactose ChEBI	-	assimilation
[Ref.: #65517]	gelatin ChEBI	+	hydrolysis
[Ref.: #65517]	gentiobiose ChEBI	-	assimilation
[Ref.: #65517]	gluconate ChEBI	-	assimilation
[Ref.: #65517]	glucose ChEBI	-	fermentation
[Ref.: #65517]	glucose ChEBI	+	assimilation
[Ref.: #65517]	glycerol ChEBI	+	energy source
[Ref.: #65517]	glycogen ChEBI	+	energy source
[Ref.: #65517]	glycyl L-aspartic acid ChEBI	+	energy source
[Ref.: #65517]	glycyl-l-glutamate ChEBI	+	energy source
[Ref.: #65517]	histidine ChEBI	+	energy source
[Ref.: #65517]	L-alaninamide ChEBI	+	energy source
[Ref.: #65517]	L-alanine ChEBI	+	energy source
[Ref.: #65517]	L-alanylglycine ChEBI	+	energy source
[Ref.: #65517]	L-arabinose ChEBI	-	assimilation
[Ref.: #65517]	L-asparagine ChEBI	+	energy source
[Ref.: #65517]	L-aspartate ChEBI	+	energy source
[Ref.: #65517]	L-glutamate ChEBI	+	energy source
[Ref.: #65517]	L-leucine ChEBI	+	energy source
[Ref.: #65517]	L-proline ChEBI	+	energy source
[Ref.: #65517]	L-pyroglutamic acid	+	energy source
[Ref.: #65517]	L-serine ChEBI	+	energy source
[Ref.: #65517]	lactate ChEBI	+	energy source
[Ref.: #65517]	mannitol ChEBI	+	assimilation
[Ref.: #65517]	mannose ChEBI	+	assimilation
[Ref.: #65517]	monomethyl succinate ChEBI	+	energy source
[Ref.: #65517]	N-acetylgalactosamine ChEBI	+	energy source
[Ref.: #65517]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65517]	nitrate ChEBI	-	reduction
[Ref.: #65517]	phenylacetate ChEBI	-	assimilation
[Ref.: #65517]	propionate ChEBI	+	energy source
[Ref.: #65517]	starch ChEBI	-	assimilation
[Ref.: #65517]	succinamate ChEBI	+	energy source
[Ref.: #65517]	succinate ChEBI	+	energy source
[Ref.: #65517]	sucrose ChEBI	-	assimilation
[Ref.: #65517]	threonine ChEBI	+	energy source
[Ref.: #65517]	trehalose ChEBI	-	assimilation
[Ref.: #65517]	tween 40 ChEBI	+	energy source
[Ref.: #65517]	tween 80 ChEBI	+	energy source
[Ref.: #65517]	tyrosine ChEBI	+	energy source
[Ref.: #65517]	urocanic acid ChEBI	+	energy source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65517]	cefotaxime ChEBI	yes	30	µg (disc)
[Ref.: #65517]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #65517]	piperacillin ChEBI				yes	100	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #65517]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Methylred-test
[Ref.: #65517]		glucose ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65517]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65517]	beta-galactosidase	-	3.2.1.23
[Ref.: #65517]	beta-glucosidase	-	3.2.1.21
[Ref.: #65517]	catalase	+	1.11.1.6
[Ref.: #65517]	gelatinase	+
[Ref.: #65517]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65517]	Sample type/isolated from	root nodules of Robinia pseudoacacia in a lead-zinc mine
[Ref.: #65517]	Geographic location (country and/or sea, region)	Mianxian County, Shaanxi Province
[Ref.: #65517]	Country	China
[Ref.: #65517]	Country ISO 3 Code	CHN
[Ref.: #65517]	Continent	Asia
[Ref.: #65517]	Geographic location	33.1148°/106.7920°
[Ref.: #65517]	Enrichment culture	YMA
[Ref.: #65517]	Enrichment culture duration	3-5 days
[Ref.: #65517]	Enrichment culture temperature	28 ̊C
[Ref.: #65517]	Isolation/enrichment procedure	The surface of the root nodules was sterilized with 95 % ethanol and 0.2 % HgCl2. They were then crushed and streaked

[Ref.: #67770]	Sample type/isolated from	Root nodules of Robinia pseudoacacia growing in a lead-zinc mine in Mianxian County
[Ref.: #67770]	Host species	Robinia pseudoacacia
[Ref.: #67770]	Geographic location (country and/or sea, region)	Shaanxi Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Heavy metal
#Engineered	#Other	#Mine
#Host Body-Site	#Plant	#Root nodule
#Host	#Plants	#Tree

What are isolation sources categories?

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Global distribution of 16S sequence KP276240 (>99% sequence identity) for Mitsuaria from Microbeatlas

Aquatic Samples	684
Soil Samples	1237
Animal Samples	741
Plant Samples	531
Total Samples	3193

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65517]	16S rRNA gene sequence	KP276240		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mitsuaria sp. 7	GCA_001653795	complete	GenBank	1658665 tax ID
[Ref.: #66792]	Mitsuaria noduli HZ7	GCA_002205125	contig	GenBank	2052484 tax ID	*
[Ref.: #66792]	Mitsuaria noduli HZ7	2831864461	draft	JGI IMG/M	2052484 tax ID	*

[Ref.: #65517]	GC-content	68.5 mol%
[Ref.: #67770]	GC-content	68.5 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #65517]

Culture collection no.

JCM 31671, CCTCC AB 2014353

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mitsuaria noduli sp. nov., isolated from the root nodules of Robinia pseudoacacia in a lead-zinc mine.	Fan MC, Nan LJ, Zhu YM, Chen WM, Wei GH, Lin YB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002459	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65517

Miao-Chun Fan, Li-Jun Nan, Ya-Min Zhu, Wei-Min Chen, Ge-Hong Wei and Yan-Bing Lin: Mitsuaria noduli sp. nov., isolated from the root nodules of Robinia pseudoacacia in a lead-zinc mine. IJSEM 68: 87 - 92 2018 ( DOI 10.1099/ijsem.0.002459 , PubMed 29095138 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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