Roseateles noduli (JCM 31671, CCTCC AB 2014353, HZ7)

Name: Roseateles noduli (JCM 31671, CCTCC AB 2014353, HZ7)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158764

Type strain

Strain Designation HZ7

Culture col. no. JCM 31671 CCTCC AB 2014353 HZ7

NCBI tax ID(s) 2052484

Special Collections JCM Literature strains

History JCM <-- Y. Lin; Northwest A&F Univ., China; HZ7.

Links

Roseateles noduli HZ7 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from root nodules of Robinia pseudoacacia in a lead-zinc mine.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27983

JCM 31671

@ref 20215

Last LPSN update 2026-05-29 08:44:02

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Sphaerotilaceae

Genus Roseateles

Species Roseateles noduli

Full scientific name Roseateles noduli (Fan et al. 2018) Liu et al. 2023

Synonyms (1)

Mitsuaria noduli

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
65517	negative	1.5-2 µm	0.3 µm	rod-shaped		monopolar

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65517	2-5 mm	white	circular	2 days	YMA

Culture and growth conditions

Culture medium

@ref	Name	Growth
65517	Trypticase Soy Agar (TSA)
65517	YMA
65517	LB (Luria-Bertani) MEDIUM

Culture temp

@ref	Growth	Type	Temperature (°C)
65517	positive	growth	4-45
65517	positive	optimum	25-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
65517	positive	optimum	7-8
65517	positive	growth	5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65517	aerobe
125439	obligate aerobe	99.704

Spore formation

@ref	Spore formation	Confidence
125439		97.519

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65517	NaCl	positive	growth	0-1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65517	64552 ChEBI	2-hydroxybutyrate	+	energy source
65517	16763 ChEBI	2-oxobutanoate	+	energy source
65517	30916 ChEBI	2-oxoglutarate	+	energy source
65517	28644 ChEBI	2-oxopentanoate	+	energy source
65517	18240 ChEBI	4-hydroxy-L-proline	+	energy source
65517	16724 ChEBI	4-hydroxybutyrate	+	energy source
65517	30089 ChEBI	acetate	+	energy source
65517	17128 ChEBI	adipate	+	assimilation
65517	17925 ChEBI	alpha-D-glucose	+	energy source
65517	22599 ChEBI	arabinose	-	assimilation
65517	22653 ChEBI	asparagine	+	energy source
65517	73706 ChEBI	bromosuccinate	+	energy source
65517	17057 ChEBI	cellobiose	+	energy source
65517	16261 ChEBI	chitosan	+	degradation
65517	16383 ChEBI	cis-aconitate	+	energy source
65517	16947 ChEBI	citrate	+	assimilation
65517	16947 ChEBI	citrate	+	energy source
65517	15570 ChEBI	D-alanine	+	energy source
65517	8391 ChEBI	D-gluconate	+	energy source
65517	17784 ChEBI	D-glucosaminic acid	+	energy source
65517	16024 ChEBI	D-mannose	+	energy source
65517	16523 ChEBI	D-serine	+	energy source
65517	27689 ChEBI	decanoate	-	assimilation
65517	15740 ChEBI	formate	+	energy source
65517	5181 ChEBI	fucoidan	-	assimilation
65517	28260 ChEBI	galactose	-	assimilation
65517	5291 ChEBI	gelatin	+	hydrolysis
65517	28066 ChEBI	gentiobiose	-	assimilation
65517	24265 ChEBI	gluconate	-	assimilation
65517	17234 ChEBI	glucose	-	fermentation
65517	17234 ChEBI	glucose	+	assimilation
65517	17754 ChEBI	glycerol	+	energy source
65517	28087 ChEBI	glycogen	+	energy source
65517	73804 ChEBI	glycyl L-aspartic acid	+	energy source
65517	73784 ChEBI	glycyl-l-glutamate	+	energy source
65517	27570 ChEBI	histidine	+	energy source
65517	21217 ChEBI	L-alaninamide	+	energy source
65517	16977 ChEBI	L-alanine	+	energy source
65517	73786 ChEBI	L-alanylglycine	+	energy source
65517	30849 ChEBI	L-arabinose	-	assimilation
65517	17196 ChEBI	L-asparagine	+	energy source
65517	29991 ChEBI	L-aspartate	+	energy source
65517	29985 ChEBI	L-glutamate	+	energy source
65517	15603 ChEBI	L-leucine	+	energy source
65517	17203 ChEBI	L-proline	+	energy source
65517		L-pyroglutamic acid	+	energy source
65517	17115 ChEBI	L-serine	+	energy source
65517	24996 ChEBI	lactate	+	energy source
65517	29864 ChEBI	mannitol	+	assimilation
65517	37684 ChEBI	mannose	+	assimilation
65517	75146 ChEBI	monomethyl succinate	+	energy source
65517	28037 ChEBI	N-acetylgalactosamine	+	energy source
65517	506227 ChEBI	N-acetylglucosamine	+	assimilation
65517	17632 ChEBI	nitrate	-	reduction
65517	18401 ChEBI	phenylacetate	-	assimilation
65517	17272 ChEBI	propionate	+	energy source
65517	28017 ChEBI	starch	-	assimilation
65517	143136 ChEBI	succinamate	+	energy source
65517	30031 ChEBI	succinate	+	energy source
65517	17992 ChEBI	sucrose	-	assimilation
65517	26986 ChEBI	threonine	+	energy source
65517	27082 ChEBI	trehalose	-	assimilation
65517	53423 ChEBI	tween 40	+	energy source
65517	53426 ChEBI	tween 80	+	energy source
65517	18186 ChEBI	tyrosine	+	energy source
65517	27248 ChEBI	urocanic acid	+	energy source

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
65517	204928	cefotaxime	30 µg (disc)
65517	7731	ofloxacin	5 µg (disc)
65517	8232	piperacillin		100 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65517	16136 ChEBI	hydrogen sulfide

Metabolite tests

@ref	Chebi-ID	Metabolite	Methylred-test
65517	17234 ChEBI	glucose	-

Enzymes

@ref	Value	Activity	Ec
65517	alpha-chymotrypsin	+	3.4.21.1
65517	beta-galactosidase	-	3.2.1.23
65517	beta-glucosidase	-	3.2.1.21
65517	catalase	+	1.11.1.6
65517	gelatinase	+
65517	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Heavy metal
#Engineered	#Other	#Mine
#Host Body-Site	#Plant	#Root nodule
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure	Host species
65517	root nodules of Robinia pseudoacacia in a lead-zinc mine	Mianxian County, Shaanxi Province	China	CHN	Asia	33.1148	106.792 33.1148/106.792	YMA	3-5 days	28	The surface of the root nodules was sterilized with 95 % ethanol and 0.2 % HgCl2. They were then crushed and streaked
67770	Root nodules of Robinia pseudoacacia growing in a lead-zinc mine in Mianxian County	Shaanxi Province	China	CHN	Asia							Robinia pseudoacacia

Taxonmaps

69479

Global distribution of 16S sequence KP276240 (>99% sequence identity) for Mitsuaria from Microbeatlas

Aquatic Samples	684
Soil Samples	1237
Animal Samples	741
Plant Samples	531
Total Samples	3193

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM165379v1 assembly for Mitsuaria sp. 7	complete	GCA_001653795	1658665.6	2718218246	1658665	88.56
66792	ASM220512v1 assembly for Roseateles noduli HZ7	contig	GCA_002205125	2008677.3	2831864461	2052484	47.58

16S sequences

@ref	Description	Accession	Database
65517	Roseateles noduli strain HZ7 16S ribosomal RNA gene, partial sequence	KP276240

GC content

@ref	GC-content (mol%)	Method
65517	68.5
67770	68.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM165379v1 assembly for Mitsuaria sp. 7
NCBI: GCA_001653795

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no
125439	motility	BacteriaNetⓘ	yes	54.93	no
125439	gram_stain	BacteriaNetⓘ	negative	62.02	no
125439	spore_formation	BacteriaNetⓘ	no	97.52	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mitsuaria noduli sp. nov., isolated from the root nodules of Robinia pseudoacacia in a lead-zinc mine.	Fan MC, Nan LJ, Zhu YM, Chen WM, Wei GH, Lin YB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002459	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65517	Miao-Chun Fan, Li-Jun Nan, Ya-Min Zhu, Wei-Min Chen, Ge-Hong Wei and Yan-Bing Lin: Mitsuaria noduli sp. nov., isolated from the root nodules of Robinia pseudoacacia in a lead-zinc mine. IJSEM 68: 87 - 92 2018 ( DOI 10.1099/ijsem.0.002459 , PubMed 29095138 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Roseateles noduli (JCM 31671, CCTCC AB 2014353, HZ7)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001653795

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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