Name: Pontibacter brevis XAAS-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158763

Type strain:

Species: Pontibacter brevis

Strain Designation: XAAS-2

Culture col. no.: CCTCC AB 2016135, JCM 31443

Strain history: G. Osman; Inst. of Microbiol., Xinijang Acad. of Agric. Sci., China; XAAS-2.

NCBI tax ID(s): 2058179 (species)

Section

Pontibacter brevis XAAS-2 is an aerobe, Gram-negative, ovoid-shaped bacterium that forms circular colonies and was isolated from rhizosphere soil of Tamarix ramosissima from a salt lake shore.

colony-forming
Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter brevis**
	Full Scientific Name (LPSN)	Pontibacter brevis Osman et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65516]	Gram stain	negative

[Ref.: #65516]	Cell length	0.6 µm

[Ref.: #65516]	Cell width	0.3-0.4 µm

[Ref.: #65516]	Cell shape	ovoid-shaped

[Ref.: #65516]	Motility	no

[Ref.: #65516]	Colony size	1-2 mm
[Ref.: #65516]	Colony color	shiny pink
[Ref.: #65516]	Colony shape	circular
[Ref.: #65516]	Incubation period	5 days
[Ref.: #65516]	Cultivation medium used	0.3x MB agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65516]

Culture medium

0.3x MB agar

[Ref.: #65516]

Culture medium growth

		Temperature
[Ref.: #65516]	growth	5-37 °C
[Ref.: #65516]	optimum	28-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #65516]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65516]			optimum	7.0-8.0
[Ref.: #65516]			growth	6.0-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65516]

Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65516]		NaCl		growth	0-8	%
[Ref.: #65516]		NaCl		optimum	0.5-2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65516]	(S)-lactate ChEBI	-	carbon source
[Ref.: #65516]	2-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65516]	2-oxobutanoate ChEBI	-	carbon source
[Ref.: #65516]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #65516]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65516]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #65516]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #65516]	acetate ChEBI	+	carbon source
[Ref.: #65516]	acetoacetate ChEBI	+	carbon source
[Ref.: #65516]	adipate ChEBI	-	assimilation
[Ref.: #65516]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #65516]	amygdalin ChEBI	-	builds acid from
[Ref.: #65516]	arbutin ChEBI	-	builds acid from
[Ref.: #65516]	bromosuccinate ChEBI	-	carbon source
[Ref.: #65516]	casein	-	hydrolysis
[Ref.: #65516]	cellobiose ChEBI	+	builds acid from
[Ref.: #65516]	cellobiose ChEBI	+	carbon source
[Ref.: #65516]	citrate ChEBI	-	carbon source
[Ref.: #65516]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65516]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65516]	D-arabitol ChEBI	-	carbon source
[Ref.: #65516]	D-aspartate ChEBI	-	carbon source
[Ref.: #65516]	D-fructose ChEBI	+	builds acid from
[Ref.: #65516]	D-fructose ChEBI	+	carbon source
[Ref.: #65516]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #65516]	D-fucose ChEBI	-	builds acid from
[Ref.: #65516]	D-fucose ChEBI	-	carbon source
[Ref.: #65516]	D-galactose ChEBI	+	carbon source
[Ref.: #65516]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #65516]	D-glucose ChEBI	-	assimilation
[Ref.: #65516]	D-glucose ChEBI	+	builds acid from
[Ref.: #65516]	D-glucose 6-phosphate ChEBI	+	carbon source
[Ref.: #65516]	D-glucuronate ChEBI	+	carbon source
[Ref.: #65516]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65516]	D-malate ChEBI	-	carbon source
[Ref.: #65516]	D-mannitol ChEBI	-	assimilation
[Ref.: #65516]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65516]	D-mannitol ChEBI	-	carbon source
[Ref.: #65516]	D-mannose ChEBI	-	assimilation
[Ref.: #65516]	D-mannose ChEBI	+	builds acid from
[Ref.: #65516]	D-mannose ChEBI	+	carbon source
[Ref.: #65516]	D-saccharate ChEBI	-	carbon source
[Ref.: #65516]	D-serine ChEBI	-	carbon source
[Ref.: #65516]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65516]	D-sorbitol ChEBI	+	carbon source
[Ref.: #65516]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65516]	D-xylose ChEBI	+	builds acid from
[Ref.: #65516]	decanoate ChEBI	-	assimilation
[Ref.: #65516]	dextrin ChEBI	+	carbon source
[Ref.: #65516]	erythritol ChEBI	-	builds acid from
[Ref.: #65516]	esculin ChEBI	+	builds acid from
[Ref.: #65516]	esculin ChEBI	+	hydrolysis
[Ref.: #65516]	formate ChEBI	-	carbon source
[Ref.: #65516]	galactarate ChEBI	-	carbon source
[Ref.: #65516]	galactitol ChEBI	-	builds acid from
[Ref.: #65516]	galactose ChEBI	+	builds acid from
[Ref.: #65516]	gamma-aminobutyric acid ChEBI	-	carbon source
[Ref.: #65516]	gelatin ChEBI	+	carbon source
[Ref.: #65516]	gelatin ChEBI	+	hydrolysis
[Ref.: #65516]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65516]	gentiobiose ChEBI	+	carbon source
[Ref.: #65516]	glucuronamide ChEBI	-	carbon source
[Ref.: #65516]	glycerol ChEBI	-	builds acid from
[Ref.: #65516]	glycerol ChEBI	-	carbon source
[Ref.: #65516]	glycine-proline ChEBI	-	carbon source
[Ref.: #65516]	glycogen ChEBI	+	builds acid from
[Ref.: #65516]	inosine ChEBI	-	carbon source
[Ref.: #65516]	inulin ChEBI	+	builds acid from
[Ref.: #65516]	L-alanine ChEBI	-	carbon source
[Ref.: #65516]	L-arabinose ChEBI	-	assimilation
[Ref.: #65516]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65516]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65516]	L-arginine ChEBI	-	carbon source
[Ref.: #65516]	L-aspartate ChEBI	+	carbon source
[Ref.: #65516]	L-fucose ChEBI	-	builds acid from
[Ref.: #65516]	L-fucose ChEBI	+	carbon source
[Ref.: #65516]	L-galactonic acid gamma-lactone ChEBI	-	carbon source
[Ref.: #65516]	L-glutamate ChEBI	+	carbon source
[Ref.: #65516]	L-histidine ChEBI	-	carbon source
[Ref.: #65516]	L-malate ChEBI	-	carbon source
[Ref.: #65516]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #65516]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #65516]	L-rhamnose ChEBI	+	carbon source
[Ref.: #65516]	L-serine ChEBI	+	carbon source
[Ref.: #65516]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65516]	L-xylose ChEBI	-	builds acid from
[Ref.: #65516]	lactose ChEBI	+	builds acid from
[Ref.: #65516]	lactose ChEBI	+	carbon source
[Ref.: #65516]	malate ChEBI	-	assimilation
[Ref.: #65516]	maltose ChEBI	-	assimilation
[Ref.: #65516]	maltose ChEBI	+	builds acid from
[Ref.: #65516]	maltose ChEBI	+	carbon source
[Ref.: #65516]	melezitose ChEBI	+	builds acid from
[Ref.: #65516]	melibiose ChEBI	+	builds acid from
[Ref.: #65516]	melibiose ChEBI	+	carbon source
[Ref.: #65516]	methyl (R)-lactate ChEBI	-	carbon source
[Ref.: #65516]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65516]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65516]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #65516]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65516]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #65516]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65516]	myo-inositol ChEBI	-	carbon source
[Ref.: #65516]	N-acetyl-beta-D-mannosamine ChEBI	-	carbon source
[Ref.: #65516]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #65516]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65516]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65516]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65516]	n-acetylneuraminate ChEBI	-	carbon source
[Ref.: #65516]	nitrate ChEBI	-	reduction
[Ref.: #65516]	pectin ChEBI	+	carbon source
[Ref.: #65516]	phenylacetate ChEBI	-	assimilation
[Ref.: #65516]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65516]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #65516]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65516]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65516]	propionate ChEBI	+	carbon source
[Ref.: #65516]	quinate ChEBI	+	carbon source
[Ref.: #65516]	raffinose ChEBI	+	builds acid from
[Ref.: #65516]	raffinose ChEBI	+	carbon source
[Ref.: #65516]	ribitol ChEBI	-	builds acid from
[Ref.: #65516]	ribose ChEBI	+	builds acid from
[Ref.: #65516]	salicin ChEBI	+	builds acid from
[Ref.: #65516]	salicin ChEBI	+	carbon source
[Ref.: #65516]	sodium citrate ChEBI	-	assimilation
[Ref.: #65516]	stachyose ChEBI	+	carbon source
[Ref.: #65516]	starch ChEBI	+	builds acid from
[Ref.: #65516]	starch ChEBI	+	hydrolysis
[Ref.: #65516]	sucrose ChEBI	+	builds acid from
[Ref.: #65516]	sucrose ChEBI	+	carbon source
[Ref.: #65516]	trehalose ChEBI	+	builds acid from
[Ref.: #65516]	trehalose ChEBI	+	carbon source
[Ref.: #65516]	turanose ChEBI	-	builds acid from
[Ref.: #65516]	turanose ChEBI	+	carbon source
[Ref.: #65516]	tween 40 ChEBI	+	carbon source
[Ref.: #65516]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #65516]	acetylspiramycin ChEBI	yes
[Ref.: #65516]	ampicillin ChEBI	yes
[Ref.: #65516]	cefotaxime ChEBI	yes
[Ref.: #65516]	ceftriaxone ChEBI	yes
[Ref.: #65516]	chloramphenicol ChEBI	yes
[Ref.: #65516]	clindamycin ChEBI	yes
[Ref.: #65516]	erythromycin ChEBI	yes
[Ref.: #65516]	gentamicin ChEBI		yes
[Ref.: #65516]	kanamycin ChEBI		yes
[Ref.: #65516]	lincomycin ChEBI	yes
[Ref.: #65516]	neomycin ChEBI	yes
[Ref.: #65516]	norfloxacin ChEBI	yes
[Ref.: #65516]	ofloxacin ChEBI	yes
[Ref.: #65516]	penicillin ChEBI	yes
[Ref.: #65516]	rifampicin ChEBI	yes
[Ref.: #65516]	streptomycin ChEBI	yes
[Ref.: #65516]	tetracycline ChEBI	yes
[Ref.: #65516]	tobramycin ChEBI		yes
[Ref.: #65516]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65516]	acetoin ChEBI	no
[Ref.: #65516]	hydrogen sulfide ChEBI	no
[Ref.: #65516]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65516]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65516]	acid phosphatase	+	3.1.3.2
[Ref.: #65516]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65516]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65516]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65516]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65516]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65516]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65516]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65516]	beta-galactosidase	+	3.2.1.23
[Ref.: #65516]	beta-glucosidase	-	3.2.1.21
[Ref.: #65516]	beta-glucuronidase	+	3.2.1.31
[Ref.: #65516]	cystine arylamidase	+	3.4.11.3
[Ref.: #65516]	esterase (C 4)	+
[Ref.: #65516]	esterase Lipase (C 8)	+
[Ref.: #65516]	leucine arylamidase	+	3.4.11.1
[Ref.: #65516]	lipase (C 14)	-
[Ref.: #65516]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65516]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65516]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65516]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65516]	trypsin	+	3.4.21.4
[Ref.: #65516]	urease	-	3.5.1.5
[Ref.: #65516]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65516]

Fatty acid	Percentage
C17:1 iso I /C17:1 anteiso B	44.5
C15:0 iso	26.3
C16:1ω5c	9.4
C16:1ω7c	5.5
C13:0 3OH / C15:1 isoH	3.5
C16:1 iso H	1.7
C16:0 iso 3OH	1.3
C17:1ω6c	1.2
C17:0 iso	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65516]	Sample type/isolated from	rhizosphere soil of Tamarix ramosissima from a salt lake shore
[Ref.: #65516]	Geographic location (country and/or sea, region)	Aydingkol Lake, Turpan, Xinjiang
[Ref.: #65516]	Country	China
[Ref.: #65516]	Country ISO 3 Code	CHN
[Ref.: #65516]	Continent	Asia
[Ref.: #65516]	Geographic location	42.6702°/89.2752°
[Ref.: #65516]	Enrichment culture	0.3x MA
[Ref.: #65516]	Enrichment culture duration	7 days
[Ref.: #65516]	Enrichment culture temperature	28 ̊C

[Ref.: #67770]	Sample type/isolated from	Rhizosphere soil of Tamarix ramosissima from the shore of Aydingkol Lake
[Ref.: #67770]	Host species	Tamarix ramosissima
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Rhizosphere
#Host	#Plants	#Shrub (Scrub)
#Environmental	#Terrestrial	#Soil
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65516]	16S rRNA gene sequence	MF410355		GenBank

[Ref.: #65516]

GC-content

50.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65516]

Culture collection no.

CCTCC AB 2016135, JCM 31443

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima.	Osman G, Gao Y, Wang N, Mahmud O, Sun J, Zhang T, Zhan F, Zhang Z, Lou K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002455	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65516

Ghenijan Osman, Yan Gao, Ning Wang, Otkur Mahmud, Jian Sun, Tao Zhang, Faqiang Zhan, Zhidong Zhang and Kai Lou: Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima. IJSEM 68: 81 - 86 2018 ( DOI 10.1099/ijsem.0.002455 , PubMed 29205133 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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