Name: Flavobacterium aurantiibacter TH167
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158736

Type strain:

Species: Flavobacterium aurantiibacter

Strain Designation: TH167

Culture col. no.: CGMCC 1.15805, LMG 29719

NCBI tax ID(s): 2023067 (species)

Section

Flavobacterium aurantiibacter TH167 is a Gram-negative, motile, rod-shaped bacterium that was isolated from a cyanobacterial aggregate from Meiliang Bay in Lake Taihu.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium aurantiibacter**
	Full Scientific Name (LPSN)	Flavobacterium aurantiibacter Cai et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65487]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.966

[Ref.: #65487]	Cell length	0.8-1.8 µm

[Ref.: #65487]	Cell width	0.6-1.2 µm

[Ref.: #65487]	Cell shape	rod-shaped

[Ref.: #65487]	Motility	yes

[Ref.: #65487]	Flagellum arrangement	gliding

[Ref.: #65487]	Colony color	orange
[Ref.: #65487]	Incubation period	2 days

[Ref.: #65487]	Pigment production	no
[Ref.: #65487]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #65487]			growth	4-32 °C
[Ref.: #65487]			optimum	28 °C

[Ref.: #65487]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65487]			optimum	7
[Ref.: #65487]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %100
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65487]		NaCl		growth	0-2	%(w/v)
[Ref.: #65487]		NaCl		optimum	0	%(w/v)

[Ref.: #65487]	Observation	proteorhodopsin gene is present
[Ref.: #65487]	Observation	cyanophycin granules may be present in the cells
[Ref.: #65487]	Observation	menaquinone-6 is the major respiratory quinone

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65487]	casein	+	hydrolysis
[Ref.: #65487]	D-glucose ChEBI	+	assimilation
[Ref.: #65487]	D-mannose ChEBI	+	assimilation
[Ref.: #65487]	esculin ChEBI	-	hydrolysis
[Ref.: #65487]	gelatin ChEBI	+	hydrolysis
[Ref.: #65487]	glucose ChEBI	-	fermentation
[Ref.: #65487]	L-arabinose ChEBI	-	assimilation
[Ref.: #65487]	lactose ChEBI	+	assimilation
[Ref.: #65487]	malate ChEBI	+	assimilation
[Ref.: #65487]	starch ChEBI	+	hydrolysis
[Ref.: #65487]	succinate ChEBI	+	assimilation
[Ref.: #65487]	trehalose ChEBI	+	assimilation
[Ref.: #65487]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65487]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #65487]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65487]	acid phosphatase	+	3.1.3.2
[Ref.: #65487]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65487]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65487]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65487]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65487]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65487]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65487]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65487]	beta-galactosidase	+	3.2.1.23
[Ref.: #65487]	beta-glucosidase	-	3.2.1.21
[Ref.: #65487]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65487]	catalase	+	1.11.1.6
[Ref.: #65487]	cystine arylamidase	+	3.4.11.3
[Ref.: #65487]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65487]	esterase (C 4)	+
[Ref.: #65487]	esterase Lipase (C 8)	+
[Ref.: #65487]	leucine arylamidase	+	3.4.11.1
[Ref.: #65487]	lipase (C 14)	-
[Ref.: #65487]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65487]	trypsin	-	3.4.21.4
[Ref.: #65487]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	methylglyoxal degradation	80	4 of 5
[Ref.: #66794]	starch degradation	80	8 of 10
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	alanine metabolism	65.52	19 of 29
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	isoleucine metabolism	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	propionate fermentation	60	6 of 10
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	non-pathway related	57.89	22 of 38
[Ref.: #66794]	lysine metabolism	57.14	24 of 42
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	mevalonate metabolism	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	pentose phosphate pathway	54.55	6 of 11
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	glutamate and glutamine metabolism	53.57	15 of 28
[Ref.: #66794]	tryptophan metabolism	52.63	20 of 38
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	methionine metabolism	50	13 of 26
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	phenylalanine metabolism	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	valine metabolism	44.44	4 of 9
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	Entner Doudoroff pathway	40	4 of 10
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	oxidative phosphorylation	38.46	35 of 91
[Ref.: #66794]	ketogluconate metabolism	37.5	3 of 8
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	arginine metabolism	33.33	8 of 24
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65487]	Sample type/isolated from	a cyanobacterial aggregate from Meiliang Bay in Lake Taihu
[Ref.: #65487]	Country	China
[Ref.: #65487]	Country ISO 3 Code	CHN
[Ref.: #65487]	Continent	Asia
[Ref.: #65487]	Geographic location	31.5000°/120.1830°
[Ref.: #65487]	Isolation/enrichment procedure	Cyanobacterial aggregates were collected and transferred to 500 ml beakers and left at room temperature for 2 h. This resulted in floatation of the cyanobacterial aggregates to the top of the beaker. Several of the largest aggregates were selected for testing and washed three times in sterile lake water. The washed aggregates were then mixed with sterile sand followed by vortexing for 60 s. Suspended cells were then serially diluted and the dilutions were plated on Reasoner's 2A (R2A) agar (Oxoi
* marker position based on {}

Isolation sources categories

#Host	#Microbial	#Bacteria
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU569908 (>99% sequence identity) for Flavobacterium aurantiibacter subclade from Microbeatlas

Aquatic Samples	445
Soil Samples	80
Animal Samples	80
Plant Samples	20
Total Samples	625

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65487]	16S rRNA gene sequence	KU569908		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium aurantiibacter TH167	GCA_002251775	scaffold	GenBank	2023067 tax ID	*

[Ref.: #65487]

GC-content

40.4 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium aurantiibacter TH167 NCBI: GCA_002251775.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium aurantiibacter TH167 NCBI: GCA_002251775.1
[Ref.: #69480]	flagellated	no	96.773	yes
[Ref.: #69480]	gram-positive	no	98.393	no
[Ref.: #69480]	anaerobic	no	98.38	no
[Ref.: #69480]	aerobic	yes	81.671	no
[Ref.: #69480]	halophile	no	89.888	yes
[Ref.: #69480]	spore-forming	no	95.085	no
[Ref.: #69480]	glucose-util	yes	82	yes
[Ref.: #69480]	thermophile	no	95.504	yes
[Ref.: #69480]	motile	no	90.824	no
[Ref.: #69480]	glucose-ferment	no	90.569	yes

Availability in culture collections External links

[Ref.: #65487]

Culture collection no.

CGMCC 1.15805, LMG 29719

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium aurantiibacter sp. nov., an orange-pigmented bacterium isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, He W, Yanan W, Yan Z, Wang C, Xu H, Shao K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002741	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65487

Haiyuan Cai, Weihong He, Wang Yanan, Zaisheng Yan, Changhui Wang, Huacheng Xu, Keqiang Shao: Flavobacterium aurantiibacter sp. nov., an orange-pigmented bacterium isolated from cyanobacterial aggregates in a eutrophic lake. IJSEM 68: 1839 - 1844 2018 ( DOI 10.1099/ijsem.0.002741 , PubMed 29629854 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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