Name: Streptomyces boninensis K11-0400
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158730

Type strain:

Species: Streptomyces boninensis

Strain Designation: K11-0400

Culture col. no.: NBRC 113073, TBRC 7755, DSM 114118

NCBI tax ID(s): 2039455 (species)

SI-ID 402905

DSM 114118

Section

Streptomyces boninensis K11-0400 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil from sampled in a limestone cave on Hahajima.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces boninensis**
	Full Scientific Name (LPSN)	Streptomyces boninensis Také et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65481]	Gram stain	positive

[Ref.: #65481]	Cell length	0.6-0.8 µm

[Ref.: #65481]	Cell width	0.4-0.5 µm

[Ref.: #65481]	Pigment production	no
[Ref.: #65481]	Pigment name	melanoid pigment

Multimedia content

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Caption:

Medium 65, 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

International Streptomyces Project 2

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Culture medium growth

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Culture medium

International Streptomyces Project 4

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Culture medium growth

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Culture medium

International Streptomyces Project 5

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Culture medium growth

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Culture medium

International Streptomyces Project 6

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Culture medium growth

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Culture medium

glucose-asparagine agar

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Culture medium growth

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Culture medium

sucrose-nitrate agar

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Culture medium growth

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Culture medium

glucose-nitrate agar

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Culture medium growth

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Culture medium

modified Bennett's agar media

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Culture medium growth

		Temperature
[Ref.: #65481]	growth	14-38 °C
[Ref.: #65481]	optimum	14-38 °C
[Ref.: #69030]	growth	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65481]			growth	5-11

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #65481]	Spore description	spiral spore chains
[Ref.: #65481]	Type of spore	spore
[Ref.: #65481]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65481]		NaCl		growth	0-10	%(w/v)

[Ref.: #65481]	Observation	white or light pink aerial mycelia are abundantly produced on ISP 5, glucose-asparagine agar and yeast extract-starch agar media
[Ref.: #65481]	Observation	whole-cell hydrolysate contains LL-diaminopi-melic acid as the diamino acid, in addition to glucose and ribose
[Ref.: #65481]	Observation	major menaquinones are MK-9 (H6) and MK-9 (H4)
[Ref.: #65481]	Observation	main polar lipids are phosphatidylethanolamine, diphosphatidylglycerol and phosphatidylinositol

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65481]	cellulose ChEBI	-	carbon source
[Ref.: #65481]	D-fructose ChEBI	+	carbon source
[Ref.: #65481]	D-glucose ChEBI	+	carbon source
[Ref.: #65481]	D-mannitol ChEBI	+	carbon source
[Ref.: #65481]	D-xylose ChEBI	+	carbon source
[Ref.: #65481]	gelatin ChEBI	+	assimilation
[Ref.: #65481]	L-arabinose ChEBI	+	carbon source
[Ref.: #65481]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65481]	melibiose ChEBI	+	carbon source
[Ref.: #65481]	milk	+	assimilation
[Ref.: #65481]	myo-inositol ChEBI	-	carbon source
[Ref.: #65481]	nitrate ChEBI	-	reduction
[Ref.: #65481]	raffinose ChEBI	+	carbon source
[Ref.: #65481]	starch ChEBI	+	hydrolysis
[Ref.: #65481]	sucrose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65481]	Sample type/isolated from	soil from sampled in a limestone cave on Hahajima
[Ref.: #65481]	Geographic location (country and/or sea, region)	Ogasawara Islands (Bonin Islands), Tokyo
[Ref.: #65481]	Country	Japan
[Ref.: #65481]	Country ISO 3 Code	JPN
[Ref.: #65481]	Continent	Asia
[Ref.: #65481]	Enrichment culture duration	3 weeks
[Ref.: #65481]	Enrichment culture temperature	27 ̊C
[Ref.: #65481]	Isolation date	March 2011
[Ref.: #65481]	Isolation/enrichment procedure	soil sample was suspended and diluted with a solution [0.38 % K2HPO4 , 0.12 % KH2PO4 , 0.51 % MgSO4 H2O, 0.25 % NaCl, 0.005 % Fe2 (SO4) 3nH2O, 0.005 % MnSO4 5H2O] and plated in humic acid-vitamin (HV) agar medium [15] supplemented benlate [final conc. 25 µg ml ^-1(w/v)] and nalidixic acid [final conc. 25 µg ml^-1 (w/v)]

[Ref.: #69030]	Sample type/isolated from	soil
[Ref.: #69030]	Geographic location (country and/or sea, region)	Hahajima, Bonin Islands, Tokyo
[Ref.: #69030]	Country	Japan
[Ref.: #69030]	Country ISO 3 Code	JPN
[Ref.: #69030]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65481]	16S rRNA gene sequence	LC322264		GenBank

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GC-content

72 mol%

Availability in culture collections External links

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Culture collection no.

NBRC 113073, TBRC 7755, DSM 114118

[Ref.: #111332]

SI-ID 402905

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces boninensis sp. nov., isolated from soil from a limestone cave in the Ogasawara Islands.	Take A, Inahashi Y, Omura S, Takahashi Y, Matsumoto A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002753	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65481

Akira Také, Yuki Inahashi, Satoshi Omura, Yoko Takahashi, Atsuko Matsumoto: Streptomyces boninensis sp. nov., isolated from soil from a limestone cave in the Ogasawara Islands. IJSEM 68: 1795 - 1799 2018 ( DOI 10.1099/ijsem.0.002753 , PubMed 29624162 )

#69030

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 114118

#111332

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402905.1 )

* These data were automatically processed and therefore are not curated

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