Name: Flavobacterium sediminilitoris YSM-43
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158690

Type strain:

Species: Flavobacterium sediminilitoris

Strain Designation: YSM-43

Culture col. no.: KACC 19435, KCTC 62142, NBRC 113020

Strain history: <- Jung-Hoon Yoon, Sungkyunkwan Univ.

NCBI tax ID(s): 2024526 (species)

Section

Flavobacterium sediminilitoris YSM-43 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from a tidal flat.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium sediminilitoris**
	Full Scientific Name (LPSN)	Flavobacterium sediminilitoris Park et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65427]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65427]	Cell length	0.8-4.0 µm

[Ref.: #65427]	Cell width	0.2-0.5 µm

[Ref.: #65427]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65427]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #65427]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #65427]	Colony size	0.5-1.0 mm
[Ref.: #65427]	Colony color	moderate yellow
[Ref.: #65427]	Colony shape	circular
[Ref.: #65427]	Incubation period	3 days
[Ref.: #65427]	Cultivation medium used	marine agar

[Ref.: #65427]	Pigment production	no
[Ref.: #65427]	Pigment name	Flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65427]

Culture medium

Marine agar (MA)

[Ref.: #65427]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65427]		optimum	30 °C
[Ref.: #65427]		growth	10 °C
[Ref.: #65427]		growth	37 °C
[Ref.: #65427]	no	growth	4 °C
[Ref.: #65427]	no	growth	40 °C
[Ref.: #67771]		growth	30 °C

[Ref.: #65427]	Temperature range	mesophilic
[Ref.: #65427]	Temperature range	psychrophilic
[Ref.: #65427]	Temperature range	mesophilic
[Ref.: #65427]	Temperature range	psychrophilic
[Ref.: #65427]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #65427]		optimum	7-8
[Ref.: #65427]		growth	5.5
[Ref.: #65427]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65427]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #65427]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65427]		NaCl		growth	0-6	%(w/v)
[Ref.: #65427]		NaCl		optimum	1-2	%(w/v)

[Ref.: #65427]	Observation	Mg2+ Ions are not required for growth
[Ref.: #65427]	Observation	the predominant menaquinone is MK-6
[Ref.: #65427]	Observation	the major polar lipids are phosphatidylethanolamine and one unidentified lipid
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65427]	casein	+	hydrolysis
[Ref.: #65427]	cellobiose ChEBI	-	builds acid from
[Ref.: #65427]	D-fructose ChEBI	-	builds acid from
[Ref.: #65427]	D-galactose ChEBI	-	builds acid from
[Ref.: #65427]	D-glucose ChEBI	+	builds acid from
[Ref.: #65427]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65427]	D-mannose ChEBI	+	builds acid from
[Ref.: #65427]	D-ribose ChEBI	-	builds acid from
[Ref.: #65427]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65427]	D-xylose ChEBI	-	builds acid from
[Ref.: #65427]	esculin ChEBI	-	hydrolysis
[Ref.: #65427]	gelatin ChEBI	+	hydrolysis
[Ref.: #65427]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #65427]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65427]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65427]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #65427]	lactose ChEBI	-	builds acid from
[Ref.: #65427]	maltose ChEBI	+	builds acid from
[Ref.: #65427]	melezitose ChEBI	-	builds acid from
[Ref.: #65427]	melibiose ChEBI	-	builds acid from
[Ref.: #65427]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65427]	nitrate ChEBI	+	reduction
[Ref.: #65427]	raffinose ChEBI	-	builds acid from
[Ref.: #65427]	starch ChEBI	+	hydrolysis
[Ref.: #65427]	sucrose ChEBI	-	builds acid from
[Ref.: #65427]	trehalose ChEBI	-	builds acid from
[Ref.: #65427]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65427]	urea ChEBI	-	hydrolysis
[Ref.: #65427]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65427]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65427]	acid phosphatase	+	3.1.3.2
[Ref.: #65427]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65427]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65427]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65427]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65427]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65427]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65427]	beta-galactosidase	-	3.2.1.23
[Ref.: #65427]	beta-glucosidase	-	3.2.1.21
[Ref.: #65427]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65427]	catalase	+	1.11.1.6
[Ref.: #65427]	cystine arylamidase	+	3.4.11.3
[Ref.: #65427]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65427]	esterase Lipase (C 8)	+
[Ref.: #65427]	leucine arylamidase	+	3.4.11.1
[Ref.: #65427]	lipase (C 14)	-
[Ref.: #65427]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65427]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65427]	trypsin	+	3.4.21.4
[Ref.: #65427]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65427]	Sample type/isolated from	a tidal flat
[Ref.: #65427]	Geographic location (country and/or sea, region)	South Sea
[Ref.: #65427]	Country	Republic of Korea
[Ref.: #65427]	Country ISO 3 Code	KOR
[Ref.: #65427]	Continent	Asia
[Ref.: #65427]	Enrichment culture	marine agar 2216 (MA; BD Difco)
[Ref.: #65427]	Enrichment culture temperature	30 ̊C

[Ref.: #67771]	Sample type/isolated from	From tidal flat
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yeosu on the South Sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF595513 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	989
Soil Samples	81
Animal Samples	266
Plant Samples	13
Total Samples	1349

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65427]	16S rRNA gene sequence	MF595513		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium sediminilitoris YSM-43	GCA_023008245	complete	GenBank	2024526 tax ID	*

[Ref.: #67771]

GC-content

29.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium sediminilitoris YSM-43 NCBI: GCA_023008245.1
[Ref.: #69480]	flagellated	no	94.035	yes
[Ref.: #69480]	gram-positive	no	98.613	yes
[Ref.: #69480]	anaerobic	no	99.459	yes
[Ref.: #69480]	aerobic	yes	87.468	no
[Ref.: #69480]	halophile	no	89.218	no
[Ref.: #69480]	spore-forming	no	93.354	yes
[Ref.: #69480]	motile	no	86.848	no
[Ref.: #69480]	glucose-ferment	no	90.616	no
[Ref.: #69480]	thermophile	no	99.591	no
[Ref.: #69480]	glucose-util	yes	76.608	no

Availability in culture collections External links

[Ref.: #65427]

Culture collection no.

KACC 19435, KCTC 62142, NBRC 113020

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium sediminilitoris sp. nov., isolated from a tidal flat.	Park S, Choi J, Choi SJ, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002555	2018	*
Genetics	Complete Genome Sequence of Flavobacterium sediminilitoris YSM-43(T), Isolated from Tidal Sediment in Yeosu.	Lee PA, Cha IT, Lee KE, Son YK, Yu J, Kim JN, Seol D	Microbiol Resour Announc	10.1128/mra.00054-22	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65427

Sooyeon Park, Jeehyun Choi, Su Jung Choi, Jung-Hoon Yoon: Flavobacterium sediminilitoris sp. nov., isolated from a tidal flat. IJSEM 68: 630 - 635 2018 ( DOI 10.1099/ijsem.0.002555 , PubMed 29303697 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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