Name: Proteus columbae 08MAS2615
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158686

Type strain:

Species: Proteus columbae

Strain Designation: 08MAS2615

Culture col. no.: DSM 104686, CGMCC 1.15982

Strain history: <- D. Wang; National Institute for Infectious Disease Control & Prevention, Chinese Center For Disease Control And Prevention, Beijing, P.R. CHINA; 08MAS2615<-D. Wang<--<-Y. lu Wang; Ma'anshan Center for Disease Control and Prevention, China.

NCBI tax ID(s): 1987580 (species)

SI-ID 400008

DSM 104686

Section

Proteus columbae 08MAS2615 is an anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from the flesh of a pigeon in Ma'anshan.

colony-forming
Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Proteus*
	Species	**Proteus columbae**
	Full Scientific Name (LPSN)	Proteus columbae Dai et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65422]	Gram stain	negative

[Ref.: #65422]	Cell shape	rod-shaped

[Ref.: #65422]	Colony shape	circular
[Ref.: #65422]	Cultivation medium used	1.5 % Luria-Bertani agar

Multimedia content

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

1.5 % Luria-Bertani agar

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Culture medium growth

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Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #65422]	growth	10-45 °C
[Ref.: #65422]	optimum	37 °C
[Ref.: #67698]	growth	37 °C

[Ref.: #65422]	Temperature range	mesophilic
[Ref.: #67698]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65422]

Oxygen tolerance

anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65422]		NaCl		growth	0-8	%(w/v)
[Ref.: #65422]		NaCl		optimum	1	%(w/v)

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Observation

cells swarm with periodic cycles of migration producing concentric zones at 37C over 24 h

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65422]	3-O-methyl alpha-D-glucopyranoside	+	assimilation
[Ref.: #65422]	4-nitrophenyl beta-D-galactopyranoside hydrolysate	-	assimilation
[Ref.: #65422]	adipate ChEBI	-	assimilation
[Ref.: #65422]	amygdalin ChEBI	-	assimilation
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	arabinose ChEBI	-	assimilation
[Ref.: #65422]	arbutin ChEBI	-	assimilation
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	cellobiose ChEBI	-	assimilation
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-arabinose ChEBI	+	assimilation
[Ref.: #68371]	D-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-arabitol ChEBI	-	assimilation
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-fructose ChEBI	+	assimilation
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-fucose ChEBI	-	assimilation
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-galactose ChEBI	+	assimilation
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-glucose ChEBI	+	assimilation
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-lyxose ChEBI	-	assimilation
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-mannitol ChEBI	-	assimilation
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-mannose ChEBI	-	assimilation
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-ribose ChEBI	+	assimilation
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-sorbitol ChEBI	-	assimilation
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-tagatose ChEBI	-	assimilation
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	D-xylose ChEBI	+	assimilation
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	decanoate ChEBI	-	assimilation
[Ref.: #65422]	erythritol ChEBI	-	assimilation
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	esculin ChEBI	-	assimilation
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	esculin ferric citrate	-	assimilation
[Ref.: #65422]	galactitol ChEBI	-	assimilation
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	gelatin ChEBI	+	assimilation
[Ref.: #65422]	gentiobiose ChEBI	-	assimilation
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	glucose ChEBI	+	assimilation
[Ref.: #65422]	glycerol ChEBI	+	assimilation
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	glycogen ChEBI	-	assimilation
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	inulin ChEBI	-	assimilation
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-arabinose ChEBI	-	assimilation
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-arabitol ChEBI	-	assimilation
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-arginine ChEBI	-	assimilation
[Ref.: #65422]	L-fucose ChEBI	-	assimilation
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-rhamnose ChEBI	-	assimilation
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-sorbose ChEBI	-	assimilation
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	L-tryptophan ChEBI	+	assimilation
[Ref.: #65422]	L-xylose ChEBI	-	assimilation
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	lactose ChEBI	-	assimilation
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	malate ChEBI	+	assimilation
[Ref.: #65422]	maltose ChEBI	+	assimilation
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	mannose ChEBI	-	assimilation
[Ref.: #65422]	melezitose ChEBI	+	assimilation
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	melibiose ChEBI	-	assimilation
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	methyl alpha-D-mannoside ChEBI	-	assimilation
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	methyl beta-D-xylopyranoside ChEBI	-	assimilation
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	myo-inositol ChEBI	-	assimilation
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	phenylacetate ChEBI	-	assimilation
[Ref.: #65422]	potassium 2-dehydro-D-gluconate	+	assimilation
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	potassium gluconate ChEBI	+	assimilation
[Ref.: #65422]	potassium nitrate ChEBI	+	assimilation
[Ref.: #65422]	raffinose ChEBI	-	assimilation
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	rhamnose ChEBI	-	assimilation
[Ref.: #65422]	ribitol ChEBI	-	assimilation
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	salicin ChEBI	-	assimilation
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	sodium citrate ChEBI	-	assimilation
[Ref.: #65422]	sorbose ChEBI	-	assimilation
[Ref.: #65422]	starch ChEBI	-	assimilation
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #65422]	sucrose ChEBI	+	assimilation
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	trehalose ChEBI	+	assimilation
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	turanose ChEBI	+	assimilation
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #65422]	urea ChEBI	+	assimilation
[Ref.: #65422]	xylitol ChEBI	-	assimilation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance
[Ref.: #65422]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65422]	ampicillin ChEBI				yes
[Ref.: #65422]	azithromycin ChEBI	yes	15	µg (disc)
[Ref.: #65422]	azithromycin ChEBI				yes
[Ref.: #65422]	cefepime ChEBI	yes	30	µg (disc)
[Ref.: #65422]	cefoxitin ChEBI	yes	30	µg (disc)
[Ref.: #65422]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #65422]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65422]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #65422]	doxycycline ChEBI	yes	30	µg (disc)
[Ref.: #65422]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65422]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65422]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65422]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65422]	sulfamethoxazole ChEBI	yes	25	µg (disc)
[Ref.: #65422]	sulfisoxazole ChEBI	yes	300	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65422]	gelatin ChEBI	yes
[Ref.: #65422]	indole ChEBI	yes
[Ref.: #65422]	sulfide ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65422]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65422]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65422]	beta-galactosidase	-	3.2.1.23
[Ref.: #65422]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65422]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65422]	phenylalanine deaminase	+	4.3.1.5
[Ref.: #65422]	urease	+	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65422]

Fatty acid	Percentage
C16:0	23.8
C16:1ω7c/ 16:1ω6c	18.5
C17:0 Cyclo	14.4
C14:0	12.4
C18:1ω6c or C18:1ω7c	12.2
C16:1 iso I/C14:0 3-OH	11

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #67698]	14926	-	+	-	+	-	+	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65422]	Sample type/isolated from	the flesh of a pigeon in Ma'anshan
[Ref.: #65422]	Geographic location (country and/or sea, region)	Anhui province
[Ref.: #65422]	Country	China
[Ref.: #65422]	Country ISO 3 Code	CHN
[Ref.: #65422]	Continent	Asia

[Ref.: #67698]	Sample type/isolated from	Food (Pigeon)
[Ref.: #67698]	Geographic location (country and/or sea, region)	Ma’anshan
[Ref.: #67698]	Country	China
[Ref.: #67698]	Country ISO 3 Code	CHN
[Ref.: #67698]	Continent	Asia
[Ref.: #67698]	Geographic location	31.6700°/118.5300°
* marker position based on {}

Isolation sources categories

#Host

#Birds

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF143629 (>99% sequence identity) for Proteus from Microbeatlas

Aquatic Samples	10
Soil Samples	4
Animal Samples	74
Plant Samples	1
Total Samples	89

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65422]	16S rRNA	MF143629		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Proteus columbae 08MAS2615	GCA_002777965	scaffold	GenBank	1987580 tax ID	*
[Ref.: #66792]	Proteus columbae 08MAS2615	2791355076	draft	JGI IMG/M	1987580 tax ID	*

[Ref.: #65422]

GC-content

37.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Proteus columbae 08MAS2615 NCBI: GCA_002777965.1
[Ref.: #69480]	flagellated	yes	75.606	no
[Ref.: #69480]	gram-positive	no	98.684	yes
[Ref.: #69480]	anaerobic	no	96.43	no
[Ref.: #69480]	aerobic	no	51.748	yes
[Ref.: #69480]	halophile	no	92.913	yes
[Ref.: #69480]	spore-forming	no	96.039	no
[Ref.: #69480]	glucose-util	yes	90.752	yes
[Ref.: #69480]	thermophile	no	98.97	yes
[Ref.: #69480]	motile	yes	90.748	no
[Ref.: #69480]	glucose-ferment	yes	89.935	no

Availability in culture collections External links

[Ref.: #67698]

Culture collection no.

DSM 104686, CGMCC 1.15982

[Ref.: #111327]

SI-ID 400008

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proteus columbae sp. nov., isolated from a pigeon in Ma'anshan, China.	Dai H, Wang Y, Fang Y, Xiao T, Huang Z, Kan B, Wang D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002541	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65422

Hang Dai, Yonglu Wang, Yujie Fang, Tao Xiao, Zhenzhou Huang, Biao Kan, Duochun Wang: Proteus columbae sp. nov., isolated from a pigeon in Ma'anshan, China. IJSEM 68: 552 - 557 2018 ( DOI 10.1099/ijsem.0.002541 , PubMed 29297845 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67698

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104686

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111327

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400008.1 )

* These data were automatically processed and therefore are not curated

Change proposal

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