Name: Marinirhabdus citrea KCCM 43216
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158685

Type strain:

Species: Marinirhabdus citrea

Culture col. no.: KCCM 43216, JCM 31588, MEBiC 09412

Strain history: K. K. Kwon; Korea Inst. of Ocean Sci. & Technol., South Korea; MEBiC09412.

NCBI tax ID(s): 1862160 (species)

Section

Marinirhabdus citrea KCCM 43216 is a Gram-negative, rod-shaped bacterium that forms irregular colonies and was isolated from a seaweed collected.

colony-forming
Gram-negative
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Marinirhabdus*
	Species	**Marinirhabdus citrea**
	Full Scientific Name (LPSN)	Marinirhabdus citrea Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65421]	Gram stain	negative

[Ref.: #65421]	Cell length	1.3-1.9 µm

[Ref.: #65421]	Cell width	0.3-0.5 µm

[Ref.: #65421]	Cell shape	rod-shaped

[Ref.: #65421]	Motility	no

[Ref.: #65421]	Colony size	0.5-1 mm
[Ref.: #65421]	Colony color	lemon-yellow
[Ref.: #65421]	Colony shape	irregular
[Ref.: #65421]	Incubation period	1 day
[Ref.: #65421]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65421]

Culture medium

Marine agar (MA)

[Ref.: #65421]

Culture medium growth

		Temperature
[Ref.: #65421]	growth	17-38 °C
[Ref.: #65421]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #65421]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65421]			optimum	7.5
[Ref.: #65421]			growth	4-8.5

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65421]		NaCl		growth	0.5-6	%(w/v)
[Ref.: #65421]		NaCl		optimum	2.5	%(w/v)

[Ref.: #65421]	Observation	major respiratory quinone is MK-6
[Ref.: #65421]	Observation	polar lipids present are phosphatidylethanolamine, two unidentified aminolipids and five unidentified lipids
[Ref.: #67770]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65421]	alpha-D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #65421]	D-fructose ChEBI	+	oxidation
[Ref.: #65421]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #65421]	D-mannitol ChEBI	+	oxidation
[Ref.: #65421]	D-mannose ChEBI	+	oxidation
[Ref.: #65421]	gelatin ChEBI	+	oxidation
[Ref.: #65421]	gentiobiose ChEBI	+	oxidation
[Ref.: #65421]	glycerol ChEBI	+	oxidation
[Ref.: #65421]	indole-3-acetic acid ChEBI	+	oxidation
[Ref.: #65421]	L-arginine ChEBI	+	oxidation
[Ref.: #65421]	L-fucose ChEBI	+	oxidation
[Ref.: #65421]	L-glutamate ChEBI	+	oxidation
[Ref.: #65421]	L-rhamnose ChEBI	+	oxidation
[Ref.: #65421]	lincomycin ChEBI	+	oxidation
[Ref.: #65421]	maltose ChEBI	+	oxidation
[Ref.: #65421]	melibiose ChEBI	+	oxidation
[Ref.: #65421]	minocycline ChEBI	+	oxidation
[Ref.: #65421]	N-acetyl-D-mannosamine ChEBI	+	oxidation
[Ref.: #65421]	nitrate ChEBI	+	reduction
[Ref.: #65421]	pectin ChEBI	+	oxidation
[Ref.: #65421]	potassium tellurite ChEBI	+	oxidation
[Ref.: #65421]	propionate ChEBI	+	oxidation
[Ref.: #65421]	rifamycin sv ChEBI	+	oxidation
[Ref.: #65421]	salicin ChEBI	+	oxidation
[Ref.: #65421]	stachyose ChEBI	+	oxidation
[Ref.: #65421]	starch ChEBI	-	assimilation
[Ref.: #65421]	sucrose ChEBI	+	oxidation
[Ref.: #65421]	tetrazolium blue ChEBI	+	oxidation
[Ref.: #65421]	trehalose ChEBI	+	oxidation
[Ref.: #65421]	turanose ChEBI	+	oxidation
[Ref.: #65421]	tween 40 ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #65421]	aztreonam ChEBI		yes
[Ref.: #65421]	d-serine ChEBI		yes
[Ref.: #65421]	fusidate ChEBI		yes
[Ref.: #65421]	nalidixic acid ChEBI		yes
[Ref.: #65421]	tetrazolium violet ChEBI		yes
[Ref.: #65421]	troleandomycin ChEBI	yes

	Metabolite	Production
[Ref.: #65421]	acetoin ChEBI	yes
[Ref.: #65421]	indole ChEBI	no
[Ref.: #65421]	sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65421]	acid phosphatase	+	3.1.3.2
[Ref.: #65421]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65421]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65421]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65421]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65421]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65421]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65421]	arginine dihydrolase	+	3.5.3.6
[Ref.: #65421]	beta-galactosidase	-	3.2.1.23
[Ref.: #65421]	beta-glucosidase	-	3.2.1.21
[Ref.: #65421]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65421]	catalase	+	1.11.1.6
[Ref.: #65421]	cystine arylamidase	+	3.4.11.3
[Ref.: #65421]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65421]	esterase (C 4)	+
[Ref.: #65421]	esterase Lipase (C 8)	+
[Ref.: #65421]	gelatinase	+
[Ref.: #65421]	leucine arylamidase	+	3.4.11.1
[Ref.: #65421]	lipase (C 14)	-
[Ref.: #65421]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65421]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65421]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65421]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65421]	trypsin	+	3.4.21.4
[Ref.: #65421]	urease	+	3.5.1.5
[Ref.: #65421]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65421]	Sample type/isolated from	a seaweed collected
[Ref.: #65421]	Geographic location (country and/or sea, region)	Yeongg-wang County
[Ref.: #65421]	Country	Republic of Korea
[Ref.: #65421]	Country ISO 3 Code	KOR
[Ref.: #65421]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Seaweed collected at Yeonggwang County
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Aquatic plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX355990 (>99% sequence identity) for Marinirhabdus citrea subclade from Microbeatlas

Aquatic Samples	1812
Soil Samples	68
Animal Samples	52
Plant Samples	20
Total Samples	1952

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65421]	16S rRNA gene sequence	KX355990		GenBank

[Ref.: #65421]

GC-content

43.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65421]

Culture collection no.

KCCM 43216, JCM 31588, MEBiC 09412

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinirhabdus citrea sp. nov., a marine bacterium isolated from a seaweed.	Yang SH, Oh JH, Seo HS, Lee JH, Kwon KK	Int J Syst Evol Microbiol	10.1099/ijsem.0.002539	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65421

Sung-Hyun Yang, Ji Hye Oh, Hyun-Seok Seo, Jung-Hyun Lee, Kae Kyoung Kwon: Marinirhabdus citrea sp. nov., a marine bacterium isolated from a seaweed. IJSEM 68: 547 - 551 2018 ( DOI 10.1099/ijsem.0.002539 , PubMed 29297847 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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