Name: Polaribacter tangerinus WS2-14
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158681

Type strain:

Species: Polaribacter tangerinus

Strain Designation: WS2-14

Culture col. no.: KCTC 52275, MCCC 1H00163

Strain history: <- Zongjun Du, Shandong Univ.

NCBI tax ID(s): 1920034 (species)

Section

Polaribacter tangerinus WS2-14 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from sediment collected from a pond for sea cucumber culture.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Polaribacter*
	Species	**Polaribacter tangerinus**
	Full Scientific Name (PNU)	Polaribacter tangerinus Han et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65417]	Gram stain	negative
[Ref.: #65417]	Cell shape	coccus-shaped
[Ref.: #65417]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #65417]	Cell length	0.4-1.6 µm
[Ref.: #65417]	Cell width	0.3-0.6 µm

[Ref.: #65417]	Cell shape	rod-shaped

[Ref.: #65417]	Cell shape	ovoid-shaped

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Cell shape	ovoid-shaped

[Ref.: #65417]	Colony size	0.8-1.5 mm
[Ref.: #65417]	Colony color	orange
[Ref.: #65417]	Incubation period	5 days

[Ref.: #65417]	Colony shape	circular
[Ref.: #65417]	Cultivation medium used	marine agar 2216

[Ref.: #65417]	Pigment production	no
[Ref.: #65417]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65417]

Culture medium

Marine agar (MA)

[Ref.: #65417]

Culture medium growth

		Temperature
[Ref.: #65417]	growth	10-37 °C
[Ref.: #65417]	growth	28 °C
[Ref.: #67771]	growth	25-30 °C

[Ref.: #65417]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #65417]			optimum	7.0-7.5
[Ref.: #65417]			growth	6.5-8.5	alkaliphile

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65417]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65417]		NaCl		growth	0.5-6.0	%(w/v)
[Ref.: #65417]		NaCl		optimum	3	%(w/v)

[Ref.: #65417]	Observation	growth does not occur under anaerobic conditions, but grows weakly under microaerobic conditions on MA with or without 0.1 % (w/v) KNO3
[Ref.: #65417]	Observation	sole respiratory quinone is MK-6
[Ref.: #65417]	Observation	the main cellular polar lipids are phosphatidylethanolamine, one unidentified phospholipid, one unidentified aminolipid and three unidentified lipids
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65417]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #65417]	bromosuccinate ChEBI	+	carbon source
[Ref.: #65417]	D-galactose ChEBI	+	carbon source
[Ref.: #65417]	D-malate ChEBI	+	carbon source
[Ref.: #65417]	D-ribose ChEBI	+	builds acid from
[Ref.: #65417]	D-sorbitol ChEBI	+	carbon source
[Ref.: #65417]	dextrin ChEBI	+	carbon source
[Ref.: #65417]	gentiobiose ChEBI	+	carbon source
[Ref.: #65417]	maltose ChEBI	+	carbon source
[Ref.: #65417]	melibiose ChEBI	+	carbon source
[Ref.: #65417]	sucrose ChEBI	+	carbon source
[Ref.: #65417]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65417]	tween 40 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #65417]		indole ChEBI
[Ref.: #65417]		sulfide ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #65417]	acid phosphatase	+	3.1.3.2
[Ref.: #65417]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65417]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65417]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65417]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65417]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65417]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65417]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65417]	beta-galactosidase	-	3.2.1.23
[Ref.: #65417]	beta-glucosidase	-	3.2.1.21
[Ref.: #65417]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65417]	catalase	-	1.11.1.6
[Ref.: #65417]	cystine arylamidase	+	3.4.11.3
[Ref.: #65417]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65417]	esterase (C 4)	-
[Ref.: #65417]	esterase Lipase (C 8)	-
[Ref.: #65417]	gelatinase	-
[Ref.: #65417]	leucine arylamidase	+	3.4.11.1
[Ref.: #65417]	lipase (C 14)	-
[Ref.: #65417]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65417]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65417]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65417]	nitrate reductase	-	1.7.99.4
[Ref.: #65417]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65417]	trypsin	+	3.4.21.4
[Ref.: #65417]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65417]	urease	-	3.5.1.5
[Ref.: #65417]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65417]

Fatty acid	Percentage
C13:0 iso	15.5
C15:0 iso 3OH	14.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65417]	Sample type/isolated from	sediment collected from a pond for sea cucumber culture
[Ref.: #65417]	Geographic location (country and/or sea, region)	Rongcheng, Shandong province
[Ref.: #65417]	Country	China
[Ref.: #65417]	Country ISO 3 Code	CHN
[Ref.: #65417]	Continent	Asia
[Ref.: #65417]	Geographic location	36.9000°/122.2330°

[Ref.: #67771]	Sample type/isolated from	From sediments, pond for sea cucumber culture in Rongcheng
[Ref.: #67771]	Geographic location (country and/or sea, region)	Shandong province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	36.9097°/122.2460°
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Echinodermata
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65417]	16S rRNA gene sequence	KX262847		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polaribacter tangerinus WS2-14	GCA_002201235	contig	GenBank	1920034 tax ID	*
[Ref.: #66792]	Polaribacter tangerinus WS2-14	2791355037	draft	JGI IMG/M	1920034 tax ID	*

[Ref.: #65417]	GC-content	31.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	31.2 mol%

Availability in culture collections External links

[Ref.: #65417]

Culture collection no.

KCTC 52275, MCCC 1H00163

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaribacter tangerinus sp. nov., isolated from sediment in a sea cucumber culture pond.	Han JR, Wang K, Zhang J, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002369	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65417

Ji-Ru Han, Kan Wang, Jing Zhang, Guan-Jun Chen, Zong-Jun Du: Polaribacter tangerinus sp. nov., isolated from sediment in a sea cucumber culture pond. IJSEM 67: 4736 - 4741 2017 ( DOI 10.1099/ijsem.0.002369 , PubMed 28984567 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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