Marmoricola endophyticus (KCTC 39789, CGMCC 1.16067, 8BXZ-J1)

Name: Marmoricola endophyticus (KCTC 39789, CGMCC 1.16067, 8BXZ-J1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158677

Type strain

Strain Designation 8BXZ-J1

Culture col. no. KCTC 39789 CGMCC 1.16067 8BXZ-J1

NCBI tax ID(s) 2040280

Special Collections KCTC Literature strains

History <- Zhong-ke Jiang, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College

Links

Marmoricola endophyticus 8BXZ-J1 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from surface-sterilized branches of Thespesia populnea.

Gram-positive rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 285881

KCTC 39789

@ref 20215

Last LPSN update 2026-02-09 11:38:23

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Propionibacteriales

Family Nocardioidaceae

Genus Marmoricola

Species Marmoricola endophyticus

Full scientific name Marmoricola endophyticus Jiang et al. 2017

Synonyms (1)

"Nocardioides marmoriendophyticus"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
65409	positive	0.80-1.6 µm	0.55-0.75 µm	rod-shaped
125438					92
125438	positive				90.963
125439	positive				99.4

Colony morphology

@ref	Colony color	Colony shape
65409	yellowish white	circular

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
65409	positive	growth	10-35
65409	positive	optimum	28-30
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH
65409	positive	optimum	7.0
65409	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65409	aerobe
67771	aerobe
125438	aerobe	91.773
125439	obligate aerobe	99.5

Spore formation

65409

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65409	NaCl	positive	growth	0-10.0 %(w/v)
65409	NaCl	positive	optimum	0-5.0 %(w/v)

Observation

@ref	Observation
65409	the cell-wall peptidoglycan contains LL-DAP as the diagnostic diaminoacid
65409	predominant menaquinone is MK-8(H 4)
65409	polar lipids comprise diphosphatidylglycerol, phosphatidyl-glycerol, phosphatidylinositol, phosphatidylcholine and two unknown lipids

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65409	37054 ChEBI	3-hydroxybutyrate	-	assimilation
65409	16724 ChEBI	4-hydroxybutyrate	-	assimilation
65409	17128 ChEBI	adipate	-	assimilation
65409		casein	+	hydrolysis
65409	62968 ChEBI	cellulose	-	hydrolysis
65409	17029 ChEBI	chitin	-	hydrolysis
65409	17634 ChEBI	D-glucose	+	assimilation
65409	16899 ChEBI	D-mannitol	+	assimilation
65409	16988 ChEBI	D-ribose	-	assimilation
65409	17924 ChEBI	D-sorbitol	-	assimilation
65409	27689 ChEBI	decanoate	-	assimilation
65409		esculin ferric citrate	+	hydrolysis
65409	5291 ChEBI	gelatin	+	hydrolysis
65409	17234 ChEBI	glucose	-	fermentation
65409	28087 ChEBI	glycogen	-	assimilation
65409	17240 ChEBI	itaconate	-	assimilation
65409		L-alanine 4-nitroanilide	-	assimilation
65409	30849 ChEBI	L-arabinose	+	assimilation
65409	18287 ChEBI	L-fucose	-	assimilation
65409	15971 ChEBI	L-histidine	-	assimilation
65409	17203 ChEBI	L-proline	-	assimilation
65409	62345 ChEBI	L-rhamnose	-	assimilation
65409	17115 ChEBI	L-serine	-	assimilation
65409	24996 ChEBI	lactate	-	assimilation
65409	25115 ChEBI	malate	+	assimilation
65409	17306 ChEBI	maltose	+	assimilation
65409	28053 ChEBI	melibiose	-	assimilation
65409	17268 ChEBI	myo-inositol	-	assimilation
65409	506227 ChEBI	N-acetylglucosamine	+	assimilation
65409	17632 ChEBI	nitrate	-	reduction
65409	18401 ChEBI	phenylacetate	-	assimilation
65409		potassium 2-dehydro-D-gluconate	-	assimilation
65409		potassium 5-dehydro-D-gluconate	-	assimilation
65409	17272 ChEBI	propionate	-	assimilation
65409	17814 ChEBI	salicin	-	assimilation
65409	53258 ChEBI	sodium citrate	-	assimilation
65409	62983 ChEBI	sodium malonate	-	assimilation
65409	28017 ChEBI	starch	+	hydrolysis
65409	17992 ChEBI	sucrose	+	assimilation
65409	53426 ChEBI	tween 80	+	hydrolysis
65409	18186 ChEBI	tyrosine	-	hydrolysis
65409	31011 ChEBI	valerate	-	assimilation
65409	15318 ChEBI	xanthine	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65409	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65409	acid phosphatase	+	3.1.3.2
65409	alkaline phosphatase	+	3.1.3.1
65409	alpha-chymotrypsin	-	3.4.21.1
65409	alpha-fucosidase	-	3.2.1.51
65409	alpha-galactosidase	-	3.2.1.22
65409	alpha-glucosidase	+	3.2.1.20
65409	alpha-mannosidase	-	3.2.1.24
65409	arginine dihydrolase	-	3.5.3.6
65409	beta-galactosidase	-	3.2.1.23
65409	beta-glucosidase	-	3.2.1.21
65409	beta-glucuronidase	-	3.2.1.31
65409	catalase	+	1.11.1.6
65409	cystine arylamidase	-	3.4.11.3
65409	cytochrome oxidase	-	1.9.3.1
65409	esterase (C 4)	+
65409	esterase Lipase (C 8)	+
65409	leucine arylamidase	+	3.4.11.1
65409	lipase (C 14)	-
65409	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65409	naphthol-AS-BI-phosphohydrolase	+
65409	trypsin	-	3.4.21.4
65409	urease	-	3.5.1.5
65409	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

65409

Fatty acid	Percentage
C18:0 10-methyl (TBSA)	22.5
C16:0 iso	21.2
C16:0	12.3
C16:0 iso 2OH	7.9
C15:0 iso	6.7
C18:0	6
C17:0 iso	4.9
C16:0 10-methyl	4.6
C18:1ω5c	4.3
C15:0	3.6
C16:0 2OH	2.8
C17:1ω8c	1.5
C17:0 10-methyl	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Stem (Branch)
#Engineered	#Treatment	#Sterilized (Desinfected)
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65409	surface-sterilized branches of Thespesia populnea	Beilun Estuary National Nature Reserve	China	CHN	Asia	21.6038	108.207 21.6038/108.207
67771	from surface-sterilized branches of Thespesia populnea collected from Beilun Estuary Mangrove Forest National Nature Reserve in Guangxi		China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464441v1 assembly for Marmoricola endophyticus CGMCC 1.16067	scaffold	GCA_014644415	2040280.3	2995411181	2040280	72.35

16S sequences

@ref	Description	Accession	Database
65409	Marmoricola endophyticus strain 8BXZ-J1 16S ribosomal RNA gene, partial sequence	KY921599

GC content

@ref	GC-content (mol%)	Method
65409	68.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marmoricola endophyticus CGMCC 1.16067
NCBI: GCA_014644415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	75.80	no
125439	motility	BacteriaNetⓘ	no	69.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marmoricola endophyticus CGMCC 1.16067
NCBI: GCA_014644415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.96	yes
125438	anaerobic	anaerobicⓘ	no	98.87	no
125438	aerobic	aerobicⓘ	yes	91.77	yes
125438	spore-forming	spore-formingⓘ	no	66.09	yes
125438	thermophilic	thermophileⓘ	no	97.39	no
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marmoricola endophyticus sp. nov., an endophytic actinobacterium isolated from Thespesia populnea.	Jiang ZK, Pan Z, Li FN, Li XJ, Liu SW, Tuo L, Jiang MG, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002297	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65409	Zhong-Ke Jiang, Zhen Pan, Fei-Na Li, Xiao-Jun Li ,Shao-Wei Liu, Li Tuo, Ming-Guo Jiang, Cheng-Hang Sun: Marmoricola endophyticus sp. nov., an endophytic actinobacterium isolated from Thespesia populnea. IJSEM 67: 4379 - 4384 2017 ( DOI 10.1099/ijsem.0.002297 , PubMed 28920827 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Marmoricola endophyticus (KCTC 39789, CGMCC 1.16067, 8BXZ-J1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014644415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media