Name: Marmoricola endophyticus 8BXZ-J1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158677

Type strain:

Species: Marmoricola endophyticus

Strain Designation: 8BXZ-J1

Culture col. no.: KCTC 39789, CGMCC 1.16067

Strain history: <- Zhong-ke Jiang, Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College

NCBI tax ID(s): 2040280 (species)

Section

Marmoricola endophyticus 8BXZ-J1 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from surface-sterilized branches of Thespesia populnea.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	Marmoricola
	Species	Marmoricola endophyticus
	Full Scientific Name (LPSN)	Marmoricola endophyticus Jiang et al. 2017

Synonym

"Nocardioides marmoriendophyticus"

Information on morphological and physiological properties Morphology

[Ref.: #65409]	Gram stain	positive
[Ref.: #65409]	Cell length	0.80-1.6 µm
[Ref.: #65409]	Cell width	0.55-0.75 µm
[Ref.: #65409]	Cell shape	rod-shaped
[Ref.: #65409]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.281

[Ref.: #65409]	Colony color	yellowish white
[Ref.: #65409]	Colony shape	circular

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #65409]	growth	10-35 °C
[Ref.: #65409]	optimum	28-30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #65409]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65409]			optimum	7.0
[Ref.: #65409]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65409]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65409]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.765

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65409]		NaCl		growth	0-10.0	%(w/v)
[Ref.: #65409]		NaCl		optimum	0-5.0	%(w/v)

[Ref.: #65409]	Observation	the cell-wall peptidoglycan contains LL-DAP as the diagnostic diaminoacid
[Ref.: #65409]	Observation	predominant menaquinone is MK-8(H 4)
[Ref.: #65409]	Observation	polar lipids comprise diphosphatidylglycerol, phosphatidyl-glycerol, phosphatidylinositol, phosphatidylcholine and two unknown lipids

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65409]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #65409]	4-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #65409]	adipate ChEBI	-	assimilation
[Ref.: #65409]	casein	+	hydrolysis
[Ref.: #65409]	cellulose ChEBI	-	hydrolysis
[Ref.: #65409]	chitin ChEBI	-	hydrolysis
[Ref.: #65409]	D-glucose ChEBI	+	assimilation
[Ref.: #65409]	D-mannitol ChEBI	+	assimilation
[Ref.: #65409]	D-ribose ChEBI	-	assimilation
[Ref.: #65409]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65409]	decanoate ChEBI	-	assimilation
[Ref.: #65409]	esculin ferric citrate	+	hydrolysis
[Ref.: #65409]	gelatin ChEBI	+	hydrolysis
[Ref.: #65409]	glucose ChEBI	-	fermentation
[Ref.: #65409]	glycogen ChEBI	-	assimilation
[Ref.: #65409]	itaconate ChEBI	-	assimilation
[Ref.: #65409]	L-alanine 4-nitroanilide	-	assimilation
[Ref.: #65409]	L-arabinose ChEBI	+	assimilation
[Ref.: #65409]	L-fucose ChEBI	-	assimilation
[Ref.: #65409]	L-histidine ChEBI	-	assimilation
[Ref.: #65409]	L-proline ChEBI	-	assimilation
[Ref.: #65409]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65409]	L-serine ChEBI	-	assimilation
[Ref.: #65409]	lactate ChEBI	-	assimilation
[Ref.: #65409]	malate ChEBI	+	assimilation
[Ref.: #65409]	maltose ChEBI	+	assimilation
[Ref.: #65409]	melibiose ChEBI	-	assimilation
[Ref.: #65409]	myo-inositol ChEBI	-	assimilation
[Ref.: #65409]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65409]	nitrate ChEBI	-	reduction
[Ref.: #65409]	phenylacetate ChEBI	-	assimilation
[Ref.: #65409]	potassium 2-dehydro-D-gluconate	-	assimilation
[Ref.: #65409]	potassium 5-dehydro-D-gluconate	-	assimilation
[Ref.: #65409]	propionate ChEBI	-	assimilation
[Ref.: #65409]	salicin ChEBI	-	assimilation
[Ref.: #65409]	sodium citrate ChEBI	-	assimilation
[Ref.: #65409]	sodium malonate ChEBI	-	assimilation
[Ref.: #65409]	starch ChEBI	+	hydrolysis
[Ref.: #65409]	sucrose ChEBI	+	assimilation
[Ref.: #65409]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65409]	tyrosine ChEBI	-	hydrolysis
[Ref.: #65409]	valerate ChEBI	-	assimilation
[Ref.: #65409]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65409]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65409]	acid phosphatase	+	3.1.3.2
[Ref.: #65409]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65409]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65409]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65409]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65409]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65409]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65409]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65409]	beta-galactosidase	-	3.2.1.23
[Ref.: #65409]	beta-glucosidase	-	3.2.1.21
[Ref.: #65409]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65409]	catalase	+	1.11.1.6
[Ref.: #65409]	cystine arylamidase	-	3.4.11.3
[Ref.: #65409]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65409]	esterase (C 4)	+
[Ref.: #65409]	esterase Lipase (C 8)	+
[Ref.: #65409]	leucine arylamidase	+	3.4.11.1
[Ref.: #65409]	lipase (C 14)	-
[Ref.: #65409]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65409]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65409]	trypsin	-	3.4.21.4
[Ref.: #65409]	urease	-	3.5.1.5
[Ref.: #65409]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65409]

Fatty acid	Percentage
C18:0 10-methyl (TBSA)	22.5
C16:0 iso	21.2
C16:0	12.3
C16:0 iso 2OH	7.9
C15:0 iso	6.7
C18:0	6
C17:0 iso	4.9
C16:0 10-methyl	4.6
C18:1ω5c	4.3
C15:0	3.6
C16:0 2OH	2.8
C17:1ω8c	1.5
C17:0 10-methyl	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65409]	Sample type/isolated from	surface-sterilized branches of Thespesia populnea
[Ref.: #65409]	Geographic location (country and/or sea, region)	Beilun Estuary National Nature Reserve
[Ref.: #65409]	Country	China
[Ref.: #65409]	Country ISO 3 Code	CHN
[Ref.: #65409]	Continent	Asia
[Ref.: #65409]	Geographic location	21.6038°/108.2070°

[Ref.: #67771]	Sample type/isolated from	from surface-sterilized branches of Thespesia populnea collected from Beilun Estuary Mangrove Forest National Nature Reserve in Guangxi
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Stem (Branch)
#Engineered	#Treatment	#Sterilized (Desinfected)
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65409]	16S rRNA gene sequence	KY921599		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marmoricola endophyticus CGMCC 1.16067	GCA_014644415	scaffold	GenBank	2040280 tax ID	*
[Ref.: #66792]	Marmoricola endophyticus strain CGMCC 1.16067	2040280.3	wgs	PATRIC	2040280 tax ID	*

[Ref.: #65409]

GC-content

68.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Marmoricola endophyticus CGMCC 1.16067 NCBI: GCA_014644415.1
[Ref.: #69481]	spore-forming	no	67	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Marmoricola endophyticus CGMCC 1.16067 NCBI: GCA_014644415.1
[Ref.: #69480]	flagellated	no	98.644	yes
[Ref.: #69480]	gram-positive	yes	93.573	no
[Ref.: #69480]	anaerobic	no	99.395	yes
[Ref.: #69480]	aerobic	yes	94.634	no
[Ref.: #69480]	halophile	no	81.205	no
[Ref.: #69480]	spore-forming	no	85.703	no
[Ref.: #69480]	glucose-util	yes	88.173	yes
[Ref.: #69480]	thermophile	no	98.603	yes
[Ref.: #69480]	motile	no	95.956	yes
[Ref.: #69480]	glucose-ferment	no	91.839	yes

Availability in culture collections External links

[Ref.: #65409]

Culture collection no.

KCTC 39789, CGMCC 1.16067

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marmoricola endophyticus sp. nov., an endophytic actinobacterium isolated from Thespesia populnea.	Jiang ZK, Pan Z, Li FN, Li XJ, Liu SW, Tuo L, Jiang MG, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002297	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65409

Zhong-Ke Jiang, Zhen Pan, Fei-Na Li, Xiao-Jun Li ,Shao-Wei Liu, Li Tuo, Ming-Guo Jiang, Cheng-Hang Sun: Marmoricola endophyticus sp. nov., an endophytic actinobacterium isolated from Thespesia populnea. IJSEM 67: 4379 - 4384 2017 ( DOI 10.1099/ijsem.0.002297 , PubMed 28920827 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Marmoricola endophyticus CGMCC 1.16067

Marmoricola endophyticus CGMCC 1.16067

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