Name: Bacteroides koreensis YS-aM39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158670

Type strain:

Species: Bacteroides koreensis

Strain Designation: YS-aM39

Culture col. no.: KCTC 15520, JCM 31393

NCBI tax ID(s): 1912896 (species)

Section

Bacteroides koreensis YS-aM39 is an anaerobe, Gram-negative, rod-shaped bacterium that forms circular colonies.

colony-forming
Gram-negative
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Bacteroidaceae*
	Genus	*Bacteroides*
	Species	**Bacteroides koreensis**
	Full Scientific Name (LPSN)	Bacteroides koreensis Shin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65401]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #65401]	Cell length	0.6-0.8 µm

[Ref.: #65401]	Cell width	0.3-0.4 µm

[Ref.: #65401]	Cell shape	rod-shaped

[Ref.: #65401]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.095

[Ref.: #65401]	Colony size	1.00 mm
[Ref.: #65401]	Colony color	creamy
[Ref.: #65401]	Colony shape	circular
[Ref.: #65401]	Cultivation medium used	Reinforced Clostridial Medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65401]

Culture medium

Reinforced Clostridial Medium

[Ref.: #65401]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65401]			growth	15-40 °C
[Ref.: #65401]			optimum	37 °C

[Ref.: #65401]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65401]			growth	5.5-10.0
[Ref.: #65401]			growth	6.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65401]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.379

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65401]		NaCl		growth	1-2	%

[Ref.: #65401]	Observation	isolates grow in the presence of bile
[Ref.: #65401]	Observation	sole quinone is MK-10, the major polarlipid is PE, and other minor lipids are PN, six PLs (PL1-PL6) and one unidentified AL (AL2)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65401]	arabinose ChEBI	+	assimilation
[Ref.: #65401]	cellobiose ChEBI	+	assimilation
[Ref.: #65401]	esculin ChEBI	+	hydrolysis
[Ref.: #65401]	gelatin ChEBI	+	hydrolysis
[Ref.: #65401]	glucose ChEBI	+	assimilation
[Ref.: #65401]	glucose ChEBI	+	fermentation
[Ref.: #65401]	glycerol ChEBI	-	assimilation
[Ref.: #65401]	lactose ChEBI	+	assimilation
[Ref.: #65401]	maltose ChEBI	+	assimilation
[Ref.: #65401]	mannitol ChEBI	+	assimilation
[Ref.: #65401]	mannose ChEBI	+	assimilation
[Ref.: #65401]	melezitose ChEBI	+	assimilation
[Ref.: #65401]	nitrate ChEBI	-	reduction
[Ref.: #65401]	raffinose ChEBI	+	assimilation
[Ref.: #65401]	rhamnose ChEBI	+	assimilation
[Ref.: #65401]	salicin ChEBI	-	assimilation
[Ref.: #65401]	sorbitol ChEBI	+	assimilation
[Ref.: #65401]	sucrose ChEBI	+	assimilation
[Ref.: #65401]	trehalose ChEBI	+	assimilation
[Ref.: #65401]	urea ChEBI	-	assimilation
[Ref.: #65401]	xylose ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65401]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65401]	6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #65401]	alanine arylamidase	-	3.4.11.2
[Ref.: #65401]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65401]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #65401]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65401]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65401]	arginine arylamidase	-
[Ref.: #65401]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65401]	beta-galactosidase	+	3.2.1.23
[Ref.: #65401]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65401]	catalase	-	1.11.1.6
[Ref.: #65401]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65401]	glutamyl-glutamate arylamidase	-
[Ref.: #65401]	glycin arylamidase	-
[Ref.: #65401]	histidine arylamidase	-
[Ref.: #65401]	leucine arylamidase	-	3.4.11.1
[Ref.: #65401]	leucyl glycin arylamidase	-	3.4.11.1
[Ref.: #65401]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65401]	phenylalanine arylamidase	-
[Ref.: #65401]	proline-arylamidase	-	3.4.11.5
[Ref.: #65401]	pyroglutamic acid arylamidase	-
[Ref.: #65401]	serine arylamidase	-
[Ref.: #65401]	tyrosine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65401]

Fatty acid	Percentage
C15:0 anteiso	38.2
C16:0 3OH	12.4
C15:0 iso	11
iso-C17:03-OH and/or C18:2 DMA	9.5
C16:0	5.6
C14:0	5.1
iso-C15:0 and/or unknown 13.570	4.4
C18:1 cis9	3
C13:1 cis 12 and/or C 14:0	2.8
anteiso-C17:0 3-OH	2.4
C15:0	2.2
C18:0	1.5
anteiso-C15:0 DMA	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence KX025133 (>99% sequence identity) for Bacteroides ovatus from Microbeatlas

Aquatic Samples	1522
Soil Samples	195
Animal Samples	77814
Plant Samples	66
Total Samples	79597

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65401]	16S rRNA gene sequence	KX025133		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacteroides koreensis JCM 31393	GCA_007341375	contig	GenBank	1912896 tax ID	*
[Ref.: #66792]	Bacteroides koreensis strain JCM 31393	1912896.5	wgs	PATRIC	1912896 tax ID	*

[Ref.: #65401]

GC-content

44.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacteroides koreensis strain JCM 31393 PATRIC: 1912896.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacteroides koreensis strain JCM 31393 PATRIC: 1912896.5
[Ref.: #69480]	motile	no	92.217	yes
[Ref.: #69480]	gram-positive	no	97.446	yes
[Ref.: #69480]	anaerobic	yes	95.573	yes
[Ref.: #69480]	aerobic	no	96.372	yes
[Ref.: #69480]	halophile	no	92.167	no
[Ref.: #69480]	spore-forming	no	94.362	no
[Ref.: #69480]	glucose-util	yes	90.284	no
[Ref.: #69480]	flagellated	no	97.31	yes
[Ref.: #69480]	thermophile	no	99.611	yes
[Ref.: #69480]	glucose-ferment	yes	76.112	yes

Availability in culture collections External links

[Ref.: #65401]

Culture collection no.

KCTC 15520, JCM 31393

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacteroides koreensis sp. nov. and Bacteroides kribbi sp. nov., two new members of the genus Bacteroides.	Shin Y, Park SJ, Paek J, Kim JS, Rhee MS, Kim H, Kook JK, Chang YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002226	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65401

Yeseul Shin, Soo-Je Park, Jayoung Paek, Joong-Su Kim, Moon-Soo Rhee, Hongik Kim, Joong-Ki Kook, Young-Hyo Chang: Bacteroides koreensis sp. nov. and Bacteroides kribbi sp. nov., two new members of the genus Bacteroides. IJSEM 67: 4352 - 4357 2017 ( DOI 10.1099/ijsem.0.002226 , PubMed 28945536 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Bacteroides koreensis strain JCM 31393

Bacteroides koreensis strain JCM 31393

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