Name: Tabrizicola fusiformis SY72
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158663

Type strain:

Species: Tabrizicola fusiformis

Strain Designation: SY72

Culture col. no.: KCTC 62105, NBRC 113021

Strain history: <- Oh Baek-Rock, KRIBB

NCBI tax ID(s): 2161679 (species)

Section

Tabrizicola fusiformis SY72 is an aerobe, Gram-negative, other bacterium that was isolated from sewage treatment plant.

Gram-negative
other
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Tabrizicola*
	Species	**Tabrizicola fusiformis**
	Full Scientific Name (LPSN)	Tabrizicola fusiformis Ko et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65390]	Gram stain	negative

[Ref.: #65390]	Cell length	1.3-2.1 µm

[Ref.: #65390]	Cell width	0.2-0.5 µm

[Ref.: #65390]	Cell shape	other

[Ref.: #65390]	Motility	no

[Ref.: #65390]	Colony color	translucent white
[Ref.: #65390]	Incubation period	3 days
[Ref.: #65390]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65390]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65390]

Culture medium growth

		Temperature
[Ref.: #65390]	growth	15-40 °C
[Ref.: #65390]	optimum	30-37 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #65390]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65390]			optimum	6-7
[Ref.: #65390]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65390]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65390]		NaCl		growth	0-1	%(w/v)
[Ref.: #65390]		NaCl	no	growth	1.5	%(w/v)

[Ref.: #65390]	Observation	fusiform-shaped bakteria
[Ref.: #65390]	Observation	Photoautotrophic and photoheterotrophic growth does not occur. Furthermore, photosynthetic pigments are not produced and apparently photosynthetic genes (pufL and pufM) are absent.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65390]	2,3-butanediol ChEBI	-	respiration
[Ref.: #65390]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65390]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #65390]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #65390]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #65390]	3-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65390]	4-hydroxy-L-proline ChEBI	-	respiration
[Ref.: #65390]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65390]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #65390]	acetate ChEBI	-	respiration
[Ref.: #65390]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #65390]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #65390]	alpha-lactose ChEBI	-	respiration
[Ref.: #65390]	amygdalin ChEBI	-	builds acid from
[Ref.: #65390]	arabinose ChEBI	+	assimilation
[Ref.: #65390]	arbutin ChEBI	-	builds acid from
[Ref.: #65390]	arginine ChEBI	+	assimilation
[Ref.: #65390]	bromosuccinate ChEBI	-	respiration
[Ref.: #65390]	cellobiose ChEBI	+	builds acid from
[Ref.: #65390]	cellobiose ChEBI	+	respiration
[Ref.: #65390]	cis-aconitate ChEBI	-	respiration
[Ref.: #65390]	citrate ChEBI	-	respiration
[Ref.: #65390]	D-alanine ChEBI	-	respiration
[Ref.: #65390]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65390]	D-arabitol ChEBI	-	respiration
[Ref.: #65390]	D-arabitol ChEBI	+	builds acid from
[Ref.: #65390]	D-fructose ChEBI	+	builds acid from
[Ref.: #65390]	D-fructose ChEBI	+	respiration
[Ref.: #65390]	D-fucose ChEBI	+	builds acid from
[Ref.: #65390]	D-galactonic acid lactone ChEBI	-	respiration
[Ref.: #65390]	D-galactose ChEBI	+	builds acid from
[Ref.: #65390]	D-galactose ChEBI	+	respiration
[Ref.: #65390]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #65390]	D-glucarate ChEBI	-	respiration
[Ref.: #65390]	D-gluconate ChEBI	-	respiration
[Ref.: #65390]	D-glucosaminic acid ChEBI	-	respiration
[Ref.: #65390]	D-glucose ChEBI	+	builds acid from
[Ref.: #65390]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #65390]	D-glucuronate ChEBI	-	respiration
[Ref.: #65390]	D-lyxose ChEBI	+	builds acid from
[Ref.: #65390]	D-mannitol ChEBI	-	respiration
[Ref.: #65390]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65390]	D-mannose ChEBI	-	builds acid from
[Ref.: #65390]	D-mannose ChEBI	-	respiration
[Ref.: #65390]	D-psicose ChEBI	-	respiration
[Ref.: #65390]	D-ribose ChEBI	-	builds acid from
[Ref.: #65390]	D-serine ChEBI	-	respiration
[Ref.: #65390]	D-sorbitol ChEBI	-	respiration
[Ref.: #65390]	D-sorbitol ChEBI	+	builds acid from
[Ref.: #65390]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65390]	D-xylose ChEBI	+	builds acid from
[Ref.: #65390]	dextrin ChEBI	-	respiration
[Ref.: #65390]	DL-carnitine ChEBI	-	respiration
[Ref.: #65390]	erythritol ChEBI	-	builds acid from
[Ref.: #65390]	erythritol ChEBI	-	respiration
[Ref.: #65390]	esculin ChEBI	+	assimilation
[Ref.: #65390]	esculin ferric citrate	+	builds acid from
[Ref.: #65390]	ethanolamine ChEBI	-	respiration
[Ref.: #65390]	formate ChEBI	-	respiration
[Ref.: #65390]	galactitol ChEBI	-	builds acid from
[Ref.: #65390]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #65390]	gentiobiose ChEBI	-	respiration
[Ref.: #65390]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65390]	glucose ChEBI	+	assimilation
[Ref.: #65390]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #65390]	glucuronamide ChEBI	-	respiration
[Ref.: #65390]	glycerol ChEBI	+	builds acid from
[Ref.: #65390]	glycerol ChEBI	+	respiration
[Ref.: #65390]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #65390]	glycogen ChEBI	-	builds acid from
[Ref.: #65390]	glycogen ChEBI	-	respiration
[Ref.: #65390]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #65390]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #65390]	inosine ChEBI	-	respiration
[Ref.: #65390]	inulin ChEBI	-	builds acid from
[Ref.: #65390]	itaconate ChEBI	-	respiration
[Ref.: #65390]	L-alaninamide ChEBI	-	respiration
[Ref.: #65390]	L-alanine ChEBI	-	respiration
[Ref.: #65390]	L-alanylglycine ChEBI	-	respiration
[Ref.: #65390]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65390]	L-arabinose ChEBI	+	respiration
[Ref.: #65390]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65390]	L-asparagine ChEBI	-	respiration
[Ref.: #65390]	L-aspartate ChEBI	-	respiration
[Ref.: #65390]	L-fucose ChEBI	-	respiration
[Ref.: #65390]	L-fucose ChEBI	+	builds acid from
[Ref.: #65390]	L-glutamate ChEBI	-	respiration
[Ref.: #65390]	L-histidine ChEBI	-	respiration
[Ref.: #65390]	L-leucine ChEBI	-	respiration
[Ref.: #65390]	L-ornithine ChEBI	-	respiration
[Ref.: #65390]	L-phenylalanine ChEBI	-	respiration
[Ref.: #65390]	L-proline ChEBI	-	respiration
[Ref.: #65390]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #65390]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #65390]	L-rhamnose ChEBI	+	respiration
[Ref.: #65390]	L-serine ChEBI	-	respiration
[Ref.: #65390]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65390]	L-threonine ChEBI	-	respiration
[Ref.: #65390]	L-xylose ChEBI	-	builds acid from
[Ref.: #65390]	lactate ChEBI	-	respiration
[Ref.: #65390]	lactose ChEBI	-	builds acid from
[Ref.: #65390]	lactulose ChEBI	-	respiration
[Ref.: #65390]	malonate ChEBI	-	respiration
[Ref.: #65390]	maltose ChEBI	+	assimilation
[Ref.: #65390]	maltose ChEBI	+	builds acid from
[Ref.: #65390]	maltose ChEBI	+	respiration
[Ref.: #65390]	mannitol ChEBI	+	assimilation
[Ref.: #65390]	mannose ChEBI	+	assimilation
[Ref.: #65390]	melezitose ChEBI	+	builds acid from
[Ref.: #65390]	melibiose ChEBI	-	builds acid from
[Ref.: #65390]	melibiose ChEBI	-	respiration
[Ref.: #65390]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #65390]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65390]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #65390]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65390]	methyl pyruvate ChEBI	-	respiration
[Ref.: #65390]	monomethyl succinate ChEBI	-	respiration
[Ref.: #65390]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65390]	myo-inositol ChEBI	-	respiration
[Ref.: #65390]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #65390]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #65390]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65390]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65390]	nitrate ChEBI	-	reduction
[Ref.: #65390]	phenylethylamine ChEBI	-	respiration
[Ref.: #65390]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65390]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65390]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65390]	propionate ChEBI	-	respiration
[Ref.: #65390]	putrescine ChEBI	-	respiration
[Ref.: #65390]	quinate ChEBI	-	respiration
[Ref.: #65390]	raffinose ChEBI	-	builds acid from
[Ref.: #65390]	raffinose ChEBI	-	respiration
[Ref.: #65390]	ribitol ChEBI	-	respiration
[Ref.: #65390]	ribitol ChEBI	-	builds acid from
[Ref.: #65390]	salicin ChEBI	-	builds acid from
[Ref.: #65390]	sebacic acid ChEBI	-	respiration
[Ref.: #65390]	starch ChEBI	-	builds acid from
[Ref.: #65390]	succinamate ChEBI	-	respiration
[Ref.: #65390]	succinate ChEBI	-	respiration
[Ref.: #65390]	sucrose ChEBI	-	respiration
[Ref.: #65390]	sucrose ChEBI	+	builds acid from
[Ref.: #65390]	thymidine ChEBI	-	respiration
[Ref.: #65390]	trehalose ChEBI	-	respiration
[Ref.: #65390]	trehalose ChEBI	+	builds acid from
[Ref.: #65390]	turanose ChEBI	-	respiration
[Ref.: #65390]	turanose ChEBI	+	builds acid from
[Ref.: #65390]	tween 40 ChEBI	-	respiration
[Ref.: #65390]	tween 80 ChEBI	-	respiration
[Ref.: #65390]	urea ChEBI	+	assimilation
[Ref.: #65390]	uridine ChEBI	-	respiration
[Ref.: #65390]	urocanic acid ChEBI	-	respiration
[Ref.: #65390]	xylitol ChEBI	-	builds acid from
[Ref.: #65390]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #65390]	amoxicillin ChEBI	yes	30	µg (disc)
[Ref.: #65390]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65390]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65390]	ceftriaxone ChEBI	yes	30	µg (disc)
[Ref.: #65390]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65390]	clarithromycin ChEBI	yes	15	µg (disc)
[Ref.: #65390]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65390]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65390]	imipenem ChEBI	yes	10	µg (disc)
[Ref.: #65390]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65390]	lincomycin ChEBI	yes	15	µg (disc)
[Ref.: #65390]	minocycline ChEBI	yes	30	µg (disc)
[Ref.: #65390]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65390]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #65390]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #65390]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #65390]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65390]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #65390]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65390]	acid phosphatase	+	3.1.3.2
[Ref.: #65390]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65390]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65390]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65390]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65390]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65390]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65390]	beta-galactosidase	-	3.2.1.23
[Ref.: #65390]	beta-glucosidase	+	3.2.1.21
[Ref.: #65390]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65390]	catalase	+	1.11.1.6
[Ref.: #65390]	cystine arylamidase	-	3.4.11.3
[Ref.: #65390]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65390]	esterase (C 4)	+
[Ref.: #65390]	esterase Lipase (C 8)	+
[Ref.: #65390]	leucine arylamidase	-	3.4.11.1
[Ref.: #65390]	lipase (C 14)	+
[Ref.: #65390]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65390]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65390]	trypsin	-	3.4.21.4
[Ref.: #65390]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65390]	Sample type/isolated from	sewage treatment plant
[Ref.: #65390]	Geographic location (country and/or sea, region)	mouth of the Nakdong River
[Ref.: #65390]	Country	Republic of Korea
[Ref.: #65390]	Country ISO 3 Code	KOR
[Ref.: #65390]	Continent	Asia
[Ref.: #65390]	Geographic location	35.0880°/128.9560°
[Ref.: #65390]	Enrichment culture	R2A agar
[Ref.: #65390]	Enrichment culture duration	10 days
[Ref.: #65390]	Enrichment culture temperature	25 ̊C
[Ref.: #65390]	Isolation/enrichment procedure	Samples were diluted serially with phosphate-buffered solution and plated onto Reasoner's 2A agar at 25°C.

[Ref.: #67771]	Sample type/isolated from	From wastewater, sewage treatment plant located river mouth of Nakdong River
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Waste

#Water treatment plant

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF543060 (>99% sequence identity) for Rhodobacteraceae from Microbeatlas

Aquatic Samples	231
Soil Samples	5
Animal Samples	39
Plant Samples	25
Total Samples	300

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65390]	16S rRNA gene sequence	MF543060		GenBank

[Ref.: #65390]

GC-content

63.5-63.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65390]

Culture collection no.

KCTC 62105, NBRC 113021

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Fuscibacter oryzae gen. nov., sp. nov., a phosphate-solubilizing bacterium isolated from the rhizosphere of rice plant.	Chhetri G, Kang M, Kim J, Kim I, So Y, Seo T	Antonie Van Leeuwenhoek	10.1007/s10482-021-01619-2	2021	*
Phylogeny	Tabrizicola sediminis sp. nov., one aerobic anoxygenic photoheterotrophic bacteria from sediment of saline lake.	Liu ZX, Dorji P, Liu HC, Li AH, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003542	2019	*
Phylogeny	Tabrizicola fusiformis sp. nov., isolated from an industrial wastewater treatment plant.	Ko DJ, Kim JS, Park DS, Lee DH, Heo SY, Seo JW, Kim CH, Oh BR	Int J Syst Evol Microbiol	10.1099/ijsem.0.002760	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65390

Dong-Jin Ko, Ji-Sun Kim, Doo-Sang Park, Dae-Hee Lee, Sun-Yeon Heo, Jeong-Woo Seo, Chul Ho Kim, Baek-Rock Oh: Tabrizicola fusiformis sp. nov., isolated from an industrial wastewater treatment plant. IJSEM 68: 1800 - 1805 2018 ( DOI 10.1099/ijsem.0.002760 , PubMed 29624160 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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