Name: Flavobacterium artemisiae SYP-B1015
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158661

Type strain:

Species: Flavobacterium artemisiae

Strain Designation: SYP-B1015

Culture col. no.: CGMCC 1.16115, KCTC 62025

Strain history: <- Yi-Xuan Zhang, Shenyang Pharmaceutical Univ.

NCBI tax ID(s): 2126556 (species)

Section

Flavobacterium artemisiae SYP-B1015 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from rhizosphere of Artemisia annua L.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium artemisiae**
	Full Scientific Name (LPSN)	Flavobacterium artemisiae Zhao et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65388]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65388]	Cell length	1.2-3.6 µm

[Ref.: #65388]	Cell width	0.3-0.5 µm

[Ref.: #65388]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65388]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #65388]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #65388]	Colony color	orange-yellow
[Ref.: #65388]	Colony shape	circular
[Ref.: #65388]	Cultivation medium used	Luria-Bertani agar

[Ref.: #65388]	Pigment production	yes
[Ref.: #65388]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

ISP2

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Culture medium growth

		Temperature
[Ref.: #65388]	growth	5-34 °C
[Ref.: #65388]	optimum	24-30 °C
[Ref.: #67771]	growth	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65388]			optimum	7
[Ref.: #65388]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65388]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65388]		NaCl		growth	0-2	%(w/v)
[Ref.: #65388]		NaCl		optimum	0	%(w/v)

[Ref.: #65388]	Observation	Congo red is not absorbed by colonies
[Ref.: #65388]	Observation	Production of brown diffusible pigment on L-tyrosine medium is negative.
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65388]	agar ChEBI	-	hydrolysis
[Ref.: #65388]	alanine ChEBI	-	nitrogen source
[Ref.: #65388]	ascorbate ChEBI	-	carbon source
[Ref.: #65388]	aspartate ChEBI	+	nitrogen source
[Ref.: #65388]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #65388]	casein	+	hydrolysis
[Ref.: #65388]	citrate ChEBI	-	carbon source
[Ref.: #65388]	cysteine ChEBI	-	nitrogen source
[Ref.: #65388]	D-fructose ChEBI	+	builds acid from
[Ref.: #65388]	D-galactose ChEBI	+	builds acid from
[Ref.: #65388]	D-galactose ChEBI	+	carbon source
[Ref.: #65388]	D-glucose ChEBI	+	builds acid from
[Ref.: #65388]	D-glucose ChEBI	+	carbon source
[Ref.: #65388]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65388]	D-mannose ChEBI	+	builds acid from
[Ref.: #65388]	D-mannose ChEBI	+	carbon source
[Ref.: #65388]	D-ribose ChEBI	-	builds acid from
[Ref.: #65388]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65388]	D-xylose ChEBI	+	builds acid from
[Ref.: #65388]	diammonium hydrogen phosphate ChEBI	-	nitrogen source
[Ref.: #65388]	erythritol ChEBI	-	builds acid from
[Ref.: #65388]	erythritol ChEBI	-	carbon source
[Ref.: #65388]	esculin ChEBI	-	hydrolysis
[Ref.: #65388]	gelatin ChEBI	-	hydrolysis
[Ref.: #65388]	glucose ChEBI	-	fermentation
[Ref.: #65388]	glutamate ChEBI	-	nitrogen source
[Ref.: #65388]	histidine ChEBI	-	nitrogen source
[Ref.: #65388]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65388]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65388]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65388]	L-sorbose ChEBI	-	carbon source
[Ref.: #65388]	malate ChEBI	-	carbon source
[Ref.: #65388]	maltose ChEBI	-	builds acid from
[Ref.: #65388]	milk	-	assimilation
[Ref.: #65388]	myo-inositol ChEBI	+	carbon source
[Ref.: #65388]	nitrate ChEBI	+	reduction
[Ref.: #65388]	proline ChEBI	+	nitrogen source
[Ref.: #65388]	raffinose ChEBI	-	builds acid from
[Ref.: #65388]	starch ChEBI	+	hydrolysis
[Ref.: #65388]	sucrose ChEBI	-	builds acid from
[Ref.: #65388]	sucrose ChEBI	-	carbon source
[Ref.: #65388]	threonine ChEBI	+	nitrogen source
[Ref.: #65388]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65388]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65388]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65388]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65388]	tyrosine ChEBI	-	hydrolysis
[Ref.: #65388]	valine ChEBI	+	nitrogen source
[Ref.: #65388]	xylitol ChEBI	-	builds acid from
[Ref.: #65388]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65388]	ampicillin ChEBI	yes	10	µg/mL
[Ref.: #65388]	cephalexin ChEBI	yes	30	µg/mL
[Ref.: #65388]	chloramphenicol ChEBI	yes	30	µg/mL
[Ref.: #65388]	gentamicin ChEBI	yes	10	µg/mL
[Ref.: #65388]	kanamycin ChEBI	yes	30	µg/mL
[Ref.: #65388]	nalidixic acid ChEBI	yes	30	µg/mL
[Ref.: #65388]	ofloxacin ChEBI	yes	30	µg/mL
[Ref.: #65388]	rifampicin ChEBI	yes	5	µg/mL
[Ref.: #65388]	tetracycline ChEBI	yes	30	µg/mL
[Ref.: #65388]	vancomycin ChEBI				yes	30	µg/mL

	Metabolite	Production
[Ref.: #65388]	acetoin ChEBI	no
[Ref.: #65388]	hydrogen sulfide ChEBI	no
[Ref.: #65388]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #65388]		acetoin ChEBI	-
[Ref.: #65388]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #65388]	catalase	+	1.11.1.6
[Ref.: #65388]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65388]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65388]

Fatty acid	Percentage
C15:0 iso	26
C15:0 iso 3OH	14.4
C17:0 iso 3OH	13.4
C15:1ω6c	4
C16:0 iso 3OH	3.7
C16:1ω7c and/or C16:1ω6c	3.6
C17:1ω9c	3.4
C17:1ω6c	3.3
C15:1 iso G	3
C18:1ω7c and/or C18:1ω6c	3
C16:0 3OH	2.7
C16:0	1.7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65388]	Sample type/isolated from	rhizosphere of Artemisia annua L
[Ref.: #65388]	Geographic location (country and/or sea, region)	Huludao, Liaoning province
[Ref.: #65388]	Country	China
[Ref.: #65388]	Country ISO 3 Code	CHN
[Ref.: #65388]	Continent	Asia
[Ref.: #65388]	Geographic location	40.8106°/119.9130°
[Ref.: #65388]	Enrichment culture	R2A
[Ref.: #65388]	Enrichment culture composition	supplemented with 100mg l-1 nystatin
[Ref.: #65388]	Enrichment culture duration	3 days
[Ref.: #65388]	Enrichment culture temperature	28 ̊C
[Ref.: #65388]	Isolation/enrichment procedure	seriall dilution method

[Ref.: #67771]	Sample type/isolated from	From rhizosphere of `Artemisia annua` L.
[Ref.: #67771]	Geographic location (country and/or sea, region)	Liaoning Province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65388]	16S rRNA gene sequence	KY038844		GenBank

[Ref.: #65388]	GC-content	33.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	33.5 mol%

Availability in culture collections External links

[Ref.: #65388]

Culture collection no.

CGMCC 1.16115, KCTC 62025

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium hungaricum sp. nov. a novel soil inhabitant, cellulolytic bacterium isolated from plough field.	Mate R, Kutasi J, Bata-Vidacs I, Kosztik J, Kukolya J, Toth E, Boka K, Tancsics A, Kovacs G, Nagy I, Toth A	Arch Microbiol	10.1007/s00203-022-02905-x	2022	*
Phylogeny	Flavobacterium endoglycinae sp. nov., an endophytic bacterium isolated from soybean (Glycine max L. cv. Gwangan) stems.	Seo J, Peng Y, Jiang L, Lee SB, Jeong RD, Park SJ, Kim CY, Choi MS, Lee J	Int J Syst Evol Microbiol	10.1099/ijsem.0.005220	2022	*
Phylogeny	Flavobacterium artemisiae sp. nov., isolated from the rhizosphere of Artemisia annua L. and emended descriptions of Flavobacterium compostarboris and Flavobacterium procerum.	Zhao JC, Cheng J, Zhang Q, Gao ZW, Zhang MY, Zhang YX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002701	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65388

Jian-Chao Zhao, Juan Cheng, Qi Zhang, Zi-Wei Gao, Meng-Yue Zhang, Yi-Xuan Zhang: Flavobacterium artemisiae sp. nov., isolated from the rhizosphere of Artemisia annua L. and emended descriptions of Flavobacterium compostarboris and Flavobacterium procerum. IJSEM 68: 1509 - 1513 2018 ( DOI 10.1099/ijsem.0.002701 , PubMed 29547095 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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