Name: Flavobacterium cyanobacteriorum TH021
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158657

Type strain:

Species: Flavobacterium cyanobacteriorum

Strain Designation: TH021

Culture col. no.: LMG 29720, CGMCC 1.16325

NCBI tax ID(s): 2022802 (species)

Section

Flavobacterium cyanobacteriorum TH021 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from cyanobacterial aggregate in eutrophic Lake Taihu.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium cyanobacteriorum**
	Full Scientific Name (LPSN)	Flavobacterium cyanobacteriorum Cai et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65384]	Gram stain	negative

[Ref.: #65384]	Cell length	1-1.8 µm

[Ref.: #65384]	Cell width	0.6-1 µm

[Ref.: #65384]	Cell shape	rod-shaped

[Ref.: #65384]	Motility	no

[Ref.: #65384]	Colony color	yellow
[Ref.: #65384]	Incubation period	1 day

[Ref.: #65384]	Pigment production	no
[Ref.: #65384]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

	Kind of temperature		Temperature
[Ref.: #65384]		growth	4-32 °C
[Ref.: #65384]		optimum	28 °C
[Ref.: #65384]	no	growth	37 °C

[Ref.: #65384]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65384]			optimum	7
[Ref.: #65384]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65384]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65384]		NaCl		growth	0-1	%(w/v)
[Ref.: #65384]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65384]	adipate ChEBI	-	assimilation
[Ref.: #65384]	agar ChEBI	-	hydrolysis
[Ref.: #65384]	amygdalin ChEBI	-	builds acid from
[Ref.: #65384]	arbutin ChEBI	-	builds acid from
[Ref.: #65384]	casein	+	hydrolysis
[Ref.: #65384]	cellobiose ChEBI	-	builds acid from
[Ref.: #65384]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65384]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65384]	D-fructose ChEBI	-	builds acid from
[Ref.: #65384]	D-fucose ChEBI	-	builds acid from
[Ref.: #65384]	D-galactose ChEBI	-	builds acid from
[Ref.: #65384]	D-glucose ChEBI	-	assimilation
[Ref.: #65384]	D-glucose ChEBI	-	builds acid from
[Ref.: #65384]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65384]	D-mannitol ChEBI	-	assimilation
[Ref.: #65384]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65384]	D-mannose ChEBI	-	assimilation
[Ref.: #65384]	D-mannose ChEBI	-	builds acid from
[Ref.: #65384]	D-ribose ChEBI	+	builds acid from
[Ref.: #65384]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65384]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65384]	D-xylose ChEBI	-	builds acid from
[Ref.: #65384]	decanoate ChEBI	-	assimilation
[Ref.: #65384]	erythritol ChEBI	-	builds acid from
[Ref.: #65384]	esculin ChEBI	+	hydrolysis
[Ref.: #65384]	esculin ferric citrate	-	builds acid from
[Ref.: #65384]	galactitol ChEBI	-	builds acid from
[Ref.: #65384]	gelatin ChEBI	-	hydrolysis
[Ref.: #65384]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65384]	gluconate ChEBI	-	assimilation
[Ref.: #65384]	glycerol ChEBI	-	builds acid from
[Ref.: #65384]	glycogen ChEBI	-	builds acid from
[Ref.: #65384]	inulin ChEBI	-	builds acid from
[Ref.: #65384]	L-arabinose ChEBI	-	assimilation
[Ref.: #65384]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65384]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65384]	L-fucose ChEBI	-	builds acid from
[Ref.: #65384]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65384]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65384]	L-xylose ChEBI	-	builds acid from
[Ref.: #65384]	lactose ChEBI	-	builds acid from
[Ref.: #65384]	malate ChEBI	-	assimilation
[Ref.: #65384]	maltose ChEBI	-	assimilation
[Ref.: #65384]	maltose ChEBI	-	builds acid from
[Ref.: #65384]	melezitose ChEBI	-	builds acid from
[Ref.: #65384]	melibiose ChEBI	-	builds acid from
[Ref.: #65384]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65384]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65384]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65384]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65384]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65384]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65384]	nitrate ChEBI	-	reduction
[Ref.: #65384]	phenylacetate ChEBI	-	assimilation
[Ref.: #65384]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65384]	potassium 5-dehydro-D-gluconate	+	builds acid from
[Ref.: #65384]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65384]	raffinose ChEBI	-	builds acid from
[Ref.: #65384]	ribitol ChEBI	-	builds acid from
[Ref.: #65384]	salicin ChEBI	-	builds acid from
[Ref.: #65384]	sodium citrate ChEBI	-	assimilation
[Ref.: #65384]	starch ChEBI	-	builds acid from
[Ref.: #65384]	starch ChEBI	+	hydrolysis
[Ref.: #65384]	sucrose ChEBI	-	builds acid from
[Ref.: #65384]	trehalose ChEBI	+	builds acid from
[Ref.: #65384]	turanose ChEBI	-	builds acid from
[Ref.: #65384]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65384]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65384]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65384]	urea ChEBI	-	hydrolysis
[Ref.: #65384]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65384]		hydrogen sulfide ChEBI	no
[Ref.: #65384]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65384]	acid phosphatase	+	3.1.3.2
[Ref.: #65384]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65384]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65384]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65384]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65384]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65384]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65384]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65384]	beta-galactosidase	-	3.2.1.23
[Ref.: #65384]	beta-glucosidase	-	3.2.1.21
[Ref.: #65384]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65384]	catalase	+	1.11.1.6
[Ref.: #65384]	cystine arylamidase	+	3.4.11.3
[Ref.: #65384]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65384]	esterase Lipase (C 8)	+
[Ref.: #65384]	gelatinase	-
[Ref.: #65384]	leucine arylamidase	+	3.4.11.1
[Ref.: #65384]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65384]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65384]	trypsin	+	3.4.21.4
[Ref.: #65384]	urease	-	3.5.1.5
[Ref.: #65384]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	gluconeogenesis	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	aspartate and asparagine metabolism	77.78	7 of 9
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	purine metabolism	68.09	64 of 94
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	pyrimidine metabolism	66.67	30 of 45
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	lysine metabolism	61.9	26 of 42
[Ref.: #66794]	glutamate and glutamine metabolism	60.71	17 of 28
[Ref.: #66794]	glycine betaine biosynthesis	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	glycolysis	58.82	10 of 17
[Ref.: #66794]	methionine metabolism	57.69	15 of 26
[Ref.: #66794]	ubiquinone biosynthesis	57.14	4 of 7
[Ref.: #66794]	mevalonate metabolism	57.14	4 of 7
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	57.14	4 of 7
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	isoprenoid biosynthesis	50	13 of 26
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	carotenoid biosynthesis	50	11 of 22
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	degradation of sugar alcohols	50	8 of 16
[Ref.: #66794]	tyrosine metabolism	50	7 of 14
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	tryptophan metabolism	47.37	18 of 38
[Ref.: #66794]	phenylalanine metabolism	46.15	6 of 13
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	pentose phosphate pathway	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	cardiolipin biosynthesis	42.86	3 of 7
[Ref.: #66794]	glutathione metabolism	42.86	6 of 14
[Ref.: #66794]	histidine metabolism	41.38	12 of 29
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin B1 metabolism	38.46	5 of 13
[Ref.: #66794]	androgen and estrogen metabolism	37.5	6 of 16
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	proline metabolism	36.36	4 of 11
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	valine metabolism	33.33	3 of 9
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	polyamine pathway	30.43	7 of 23
[Ref.: #66794]	Entner Doudoroff pathway	30	3 of 10
[Ref.: #66794]	arginine metabolism	29.17	7 of 24
[Ref.: #66794]	degradation of hexoses	27.78	5 of 18
[Ref.: #66794]	ascorbate metabolism	27.27	6 of 22
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	degradation of pentoses	25	7 of 28
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	sulfate reduction	23.08	3 of 13
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65384]	Sample type/isolated from	cyanobacterial aggregate in eutrophic Lake Taihu
[Ref.: #65384]	Geographic location (country and/or sea, region)	Changjiang (Yangtze) river delta, Lake Taihu, Meiliang Bay
[Ref.: #65384]	Country	China
[Ref.: #65384]	Country ISO 3 Code	CHN
[Ref.: #65384]	Continent	Asia
[Ref.: #65384]	Geographic location	31.5000°/120.1830°
[Ref.: #65384]	Enrichment culture	R2A
[Ref.: #65384]	Enrichment culture temperature	28 ̊C
[Ref.: #65384]	Isolation/enrichment procedure	Several of the largest aggregates were selected for testing and washed three times in sterile lake water. The washed aggregates were then mixed with sterile sand followed by vortexing for 60 s. Suspended cells were then serially diluted and the dilutions were plated on Rea-soner's 2A agar plates and then incubated at 28°C to isolate bacteria.
* marker position based on {}

Isolation sources categories

#Host	#Microbial	#Bacteria
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU569907 (>99% sequence identity) for Flavobacterium cyanobacteriorum subclade from Microbeatlas

Aquatic Samples	359
Soil Samples	68
Animal Samples	63
Plant Samples	21
Total Samples	511

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65384]	16S rRNA gene sequence	KU569907		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium cyanobacteriorum TH021	GCA_002251835	scaffold	GenBank	2022802 tax ID	*
[Ref.: #66792]	Flavobacterium cyanobacteriorum TH021	2773857927	complete	JGI IMG/M	2022802 tax ID	*

[Ref.: #65384]

GC-content

41.9 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65384]

Culture collection no.

LMG 29720, CGMCC 1.16325

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium cyanobacteriorum sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, Zeng Y, Wang Y, Cui H, Jiang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002664	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65384

Haiyuan Cai, Yonghui Zeng, Yanan Wang, Henglin Cui, Helong Jiang: Flavobacterium cyanobacteriorum sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake. IJSEM 68: 1279 - 1284 2018 ( DOI 10.1099/ijsem.0.002664 , PubMed 29485392 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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