Alteromonas oceani (KCTC 52449, CGMCC 1.16029, S35)

Name: Alteromonas oceani (KCTC 52449, CGMCC 1.16029, S35)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158616

Type strain

Strain Designation S35

Culture col. no. KCTC 52449 CGMCC 1.16029 S35

NCBI tax ID(s) 2071609

Special Collections KCTC Literature strains

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Alteromonas oceani S35 is an aerobe, psychrophilic, Gram-negative prokaryote that forms circular colonies and was isolated from deep-sea sediment of the Pacmanus hydrothermal field.

Gram-negative motile rod-shaped colony-forming aerobe psychrophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27281

KCTC 52449

@ref 20215

Last LPSN update 2025-12-16 10:08:04

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Alteromonas

Species Alteromonas oceani

Full scientific name Alteromonas oceani Jin et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
65338	negative	1.5-2.5 µm	0.3-0.8 µm	rod-shaped	monotrichous, polar
125439	negative					99.1
125438	negative					98

Colony morphology

@ref	Colony color	Colony shape	Medium used
65338	white	circular	2216E marine agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
65338	2216E marine agar

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65338	positive	growth	4	psychrophilic
65338	positive	growth	50	thermophilic
65338	positive	optimum	28	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65338	positive	optimum	7-8
65338	positive	growth	6-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	aerobe
125439	aerobe	91.8

Spore formation

@ref	Spore formation	Confidence
125439		98.9

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65338	NaCl	positive	growth	0-13 %(w/v)
65338	NaCl	positive	optimum	1-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65338		casein	-	assimilation
65338	17057 ChEBI	cellobiose	+	carbon source
65338	17057 ChEBI	cellobiose	+	energy source
65338	15824 ChEBI	D-fructose	+	carbon source
65338	15824 ChEBI	D-fructose	+	energy source
65338	16024 ChEBI	D-mannose	+	carbon source
65338	16024 ChEBI	D-mannose	+	energy source
65338	16988 ChEBI	D-ribose	+	carbon source
65338	16988 ChEBI	D-ribose	+	energy source
65338	4853 ChEBI	esculin	+	carbon source
65338	4853 ChEBI	esculin	+	energy source
65338	28087 ChEBI	glycogen	+	carbon source
65338	28087 ChEBI	glycogen	+	energy source
65338	30849 ChEBI	L-arabinose	+	carbon source
65338	30849 ChEBI	L-arabinose	+	energy source
65338	17266 ChEBI	L-sorbose	+	carbon source
65338	17266 ChEBI	L-sorbose	+	energy source
65338	17306 ChEBI	maltose	+	carbon source
65338	17306 ChEBI	maltose	+	energy source
65338	6731 ChEBI	melezitose	+	carbon source
65338	6731 ChEBI	melezitose	+	energy source
65338	28017 ChEBI	starch	+	hydrolysis
65338	17992 ChEBI	sucrose	+	carbon source
65338	17992 ChEBI	sucrose	+	energy source
65338	53424 ChEBI	tween 20	+	hydrolysis
65338	53423 ChEBI	tween 40	+	hydrolysis
65338	53425 ChEBI	tween 60	+	hydrolysis
65338	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
65338	2637	amikacin	30 µg (disc)
65338	17698	chloramphenicol		30 µg (disc)
65338	100241	ciprofloxacin		5 µg (disc)
65338	48923	erythromycin	15 µg (disc)
65338	5195	furazolidone	300 µg (disc)
65338	17833	gentamicin	10 µg (disc)
65338	6104	kanamycin	30 µg (disc)
65338	31845	midecamycin	30 µg (disc)
65338	100246	norfloxacin		10 µg (disc)
65338	7731	ofloxacin		5 µg (disc)
65338	8232	piperacillin	100 µg (disc)
65338	8309	polymyxin b	300 Unit (disc)
65338	9332	sulfamethoxazole		25 µg (disc)

Enzymes

@ref	Value	Activity	Ec
65338	acid phosphatase	+	3.1.3.2
65338	alkaline phosphatase	+	3.1.3.1
65338	alpha-galactosidase	+	3.2.1.22
65338	alpha-glucosidase	+	3.2.1.20
65338	beta-glucosidase	+	3.2.1.21
65338	catalase	+	1.11.1.6
65338	chymotrypsin	+	3.4.4.5
65338	cystine arylamidase	+	3.4.11.3
65338	esterase (C 4)	+
65338	leucine aminopeptidase	+	3.4.1.1
65338	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65338	naphthol-AS-BI-phosphohydrolase	+
65338	trypsin	+	3.4.21.4
65338	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65338

Fatty acid	Percentage	ECL
C16:1ω7c and/or C16:1ω6c	39.4
C18:1ω7c and/or C18:1ω6c	14
C16:0	10.7
C17:1ω8c	8.9
C14:0 3OH and/or C16:1 iso I	2.6
C12:0 3OH	2.2
C14:0	2.1
C12:1 3OH	2.1
C14:0 iso	1.7
C16:0 iso	1.7
C17:0	1.5
C15:0 anteiso	1.4
C12:0	1.4
C17:0 anteiso	0.9
C18:0	0.9
10 methyl C19:0	0.9
C17:1ω6c	0.8
unknown fatty acid of ECL 18.846, C19:0 cycl	0.7	19
C11:0 3OH	0.7
C16:1ω7c alcohol	0.6
iso-C15:1 H and/or C13:0 3-OH	0.6
C18:1ω9c	0.5
C17:0 iso	0.4
C10:0 3OH	0.4
C18:0 iso	0.4
C15:1ω8c	0.3
C15:0 iso	0.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
65338	deep-sea sediment (depth 1851 m) of the Pacmanus hydrothermal field	Manus Basin	Papua New Guinea	PNG	Australia and Oceania	-3.73422	151.677 -3.73422/151.677	2216E marine agar	5 days	28
67771	From pacmanus hydrothermal field, Deep-sea sediment		China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM373163v1 assembly for Alteromonas oceani S35	scaffold	GCA_003731635	2071609.3	2855655360	2071609	53.3
124043	ASM4264610v1 assembly for Alteromonas oceani KCTC 52449	contig	GCA_042646105			2071609	44.87
124043	ASM4267836v1 assembly for Alteromonas oceani CGMCC 1.16029	contig	GCA_042678365			2071609	43.67

16S sequences

@ref	Description	Accession	Database
65338	Alteromonas oceani strain S35 16S ribosomal RNA gene, partial sequence	MF687202

GC content

@ref	GC-content (mol%)	Method
65338	51.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Alteromonas oceani S35
NCBI: GCA_003731635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.90	no
125439	motility	BacteriaNetⓘ	yes	75.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	91.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteromonas oceani S35
NCBI: GCA_003731635.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	97.02	yes
125438	aerobic	aerobicⓘ	yes	71.89	yes
125438	spore-forming	spore-formingⓘ	no	89.97	no
125438	thermophilic	thermophileⓘ	no	98.98	no
125438	flagellated	motile2+ⓘ	yes	86.30	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	N-Acyl Homoserine Lactone Production by the Marine Isolate, Dasania marina.	Alimiran F, David S, Birks S, Oldham A, Henderson D.	Microorganisms	10.3390/microorganisms12071496	2024
	Development of a free radical scavenging bacterial consortium to mitigate oxidative stress in cnidarians.	Dungan AM, Bulach D, Lin H, van Oppen MJH, Blackall LL.	Microb Biotechnol	10.1111/1751-7915.13877	2021
	Immunomodulatory effects of a probiotic combination treatment to improve the survival of Pacific oyster (Crassostrea gigas) larvae against infection by Vibrio coralliilyticus.	Hesser J, Mueller RS, Langdon C, Schubiger CB.	Front Immunol	10.3389/fimmu.2024.1380089	2024
	Uncovering potential interspecies signaling factors in plant-derived mixed microbial culture.	Domzalski A, Perez SD, Yoo B, Velasquez A, Vigo V, Pasolli HA, Oldham AL, Henderson DP, Kawamura A.	Bioorg Med Chem	10.1016/j.bmc.2021.116254	2021
Phylogeny	Alteromonas alba sp. nov., a marine bacterium isolated from seawater of the West Pacific Ocean.	Sun C, Xamxidin M, Wu YH, Cheng H, Wang CS, Xu XW.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003151	2019
Phylogeny	Alteromonas oceani sp. nov., isolated from deep-sea sediment of a hydrothermal field.	Jin QW, Hu YH, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002560	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65338	Qian-wen Jin, Yong-hua Hu, Li Sun: Alteromonas oceani sp. nov., isolated from deep-sea sediment of a hydrothermal field. IJSEM 68: 657 - 662 2018 ( DOI 10.1099/ijsem.0.002560 , PubMed 29388542 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteromonas oceani (KCTC 52449, CGMCC 1.16029, S35)

Name and taxonomic classification