Name: Flavobacterium foetidum CJ42
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158613

Type strain:

Species: Flavobacterium foetidum

Strain Designation: CJ42

Culture col. no.: KACC 19302, JCM 32085

Strain history: C.-J. Cha; Chung-Ang Univ., South Korea; CJ42.

NCBI tax ID(s): 2026681 (species)

Section

Flavobacterium foetidum CJ42 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from ginseng soil.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium foetidum**
	Full Scientific Name (PNU)	Flavobacterium foetidum Bu and Cha 2018

Information on morphological and physiological properties Morphology

[Ref.: #65335]	Gram stain	negative
[Ref.: #65335]	Cell length	1.6-1.7 µm
[Ref.: #65335]	Cell width	0.6-0.75 µm
[Ref.: #65335]	Cell shape	rod-shaped
[Ref.: #65335]	Motility	yes

[Ref.: #69480]	Gram stain	negative Confidence in %99.99

[Ref.: #65335]	Colony color	yellow
[Ref.: #65335]	Colony shape	circular
[Ref.: #65335]	Cultivation medium used	tryptic soy agar

[Ref.: #65335]	Pigment production	yes
[Ref.: #65335]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65335]

Culture medium

tryptic soy agar

[Ref.: #65335]

Culture medium growth

		Temperature
[Ref.: #65335]	growth	15-37 °C
[Ref.: #65335]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #65335]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65335]			optimum	7
[Ref.: #65335]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65335]

Oxygen tolerance

aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65335]		NaCl		growth	0-1	%
[Ref.: #65335]		NaCl		optimum	0	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65335]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #65335]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #65335]	amygdalin ChEBI	+	builds acid from
[Ref.: #65335]	arbutin ChEBI	-	builds acid from
[Ref.: #65335]	casein	+	hydrolysis
[Ref.: #65335]	cellobiose ChEBI	+	builds acid from
[Ref.: #65335]	cellobiose ChEBI	+	carbon source
[Ref.: #65335]	cellulose ChEBI	+	hydrolysis
[Ref.: #65335]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65335]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65335]	D-fructose ChEBI	+	builds acid from
[Ref.: #65335]	D-fructose ChEBI	+	carbon source
[Ref.: #65335]	D-fucose ChEBI	-	builds acid from
[Ref.: #65335]	D-galactose ChEBI	+	builds acid from
[Ref.: #65335]	D-galactose ChEBI	+	carbon source
[Ref.: #65335]	D-glucose ChEBI	+	builds acid from
[Ref.: #65335]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65335]	D-mannitol ChEBI	-	assimilation
[Ref.: #65335]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65335]	D-mannose ChEBI	+	assimilation
[Ref.: #65335]	D-mannose ChEBI	+	builds acid from
[Ref.: #65335]	D-mannose ChEBI	+	carbon source
[Ref.: #65335]	D-ribose ChEBI	-	builds acid from
[Ref.: #65335]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65335]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65335]	D-xylose ChEBI	+	builds acid from
[Ref.: #65335]	decanoate ChEBI	-	assimilation
[Ref.: #65335]	dextrin ChEBI	+	carbon source
[Ref.: #65335]	dna ChEBI	+	assimilation
[Ref.: #65335]	erythritol ChEBI	-	builds acid from
[Ref.: #65335]	esculin ferric citrate	+	builds acid from
[Ref.: #65335]	galactitol ChEBI	-	builds acid from
[Ref.: #65335]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65335]	gentiobiose ChEBI	+	carbon source
[Ref.: #65335]	glucose ChEBI	+	assimilation
[Ref.: #65335]	glycerol ChEBI	-	builds acid from
[Ref.: #65335]	glycogen ChEBI	+	builds acid from
[Ref.: #65335]	glycogen ChEBI	+	carbon source
[Ref.: #65335]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #65335]	inulin ChEBI	-	builds acid from
[Ref.: #65335]	L-arabinose ChEBI	+	assimilation
[Ref.: #65335]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65335]	L-arabinose ChEBI	+	carbon source
[Ref.: #65335]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65335]	L-asparagine ChEBI	+	carbon source
[Ref.: #65335]	L-aspartate ChEBI	+	carbon source
[Ref.: #65335]	L-fucose ChEBI	+	builds acid from
[Ref.: #65335]	L-glutamate ChEBI	+	carbon source
[Ref.: #65335]	L-proline ChEBI	+	carbon source
[Ref.: #65335]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65335]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65335]	L-xylose ChEBI	-	builds acid from
[Ref.: #65335]	lactose ChEBI	+	builds acid from
[Ref.: #65335]	maltose ChEBI	+	assimilation
[Ref.: #65335]	maltose ChEBI	+	builds acid from
[Ref.: #65335]	maltose ChEBI	+	carbon source
[Ref.: #65335]	melibiose ChEBI	-	builds acid from
[Ref.: #65335]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65335]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65335]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65335]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65335]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65335]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65335]	nitrate ChEBI	-	reduction
[Ref.: #65335]	phenylacetate ChEBI	-	assimilation
[Ref.: #65335]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65335]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65335]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65335]	raffinose ChEBI	-	builds acid from
[Ref.: #65335]	ribitol ChEBI	-	builds acid from
[Ref.: #65335]	salicin ChEBI	-	builds acid from
[Ref.: #65335]	sodium citrate ChEBI	-	assimilation
[Ref.: #65335]	starch ChEBI	-	hydrolysis
[Ref.: #65335]	starch ChEBI	+	builds acid from
[Ref.: #65335]	sucrose ChEBI	-	builds acid from
[Ref.: #65335]	trehalose ChEBI	-	builds acid from
[Ref.: #65335]	turanose ChEBI	-	builds acid from
[Ref.: #65335]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65335]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65335]	acid phosphatase	+	3.1.3.2
[Ref.: #65335]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65335]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65335]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65335]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65335]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65335]	beta-galactosidase	+	3.2.1.23
[Ref.: #65335]	beta-glucosidase	+	3.2.1.21
[Ref.: #65335]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65335]	catalase	+	1.11.1.6
[Ref.: #65335]	cystine arylamidase	-	3.4.11.3
[Ref.: #65335]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65335]	esterase (C 4)	+
[Ref.: #65335]	esterase Lipase (C 8)	+
[Ref.: #65335]	leucine arylamidase	+	3.4.11.1
[Ref.: #65335]	lipase (C 14)	-
[Ref.: #65335]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65335]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65335]	trypsin	+	3.4.21.4
[Ref.: #65335]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65335]

Fatty acid	Percentage
C15:0 iso 3OH	43652
C15:0 iso	22.3
C16:1ω7c and/or C16:1ω6c	18.7
C17:0 iso 3OH	8.3
C16:0	7.6
C16:0 3OH	6.3
C15:1 iso G	4.2
C15:1ω6c	2.9
C17:1ω6c	2.7
C17:1 iso ω9c	2.4
C15:0 anteiso	2.1
C15:0 3OH	2.1
C17:1ω8c	1.4
C14:0	1.3
C14:0 3OH and/or C16:1 iso I	1.1
C16:0 iso 3OH	1
C16:1ω5c	1
C16:0 iso	0.8
C17:0 3OH	0.7
C18:1ω9c	0.5
C17:0 iso	0.5
C14:0 iso	0.5
C13:0	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65335]	Sample type/isolated from	ginseng soil
[Ref.: #65335]	Sampling date	2012-12
[Ref.: #65335]	Geographic location (country and/or sea, region)	Anseong
[Ref.: #65335]	Country	Republic of Korea
[Ref.: #65335]	Country ISO 3 Code	KOR
[Ref.: #65335]	Continent	Asia
[Ref.: #65335]	Geographic location	37.0651°/127.4840°
[Ref.: #65335]	Enrichment culture	R2A
[Ref.: #65335]	Isolation/enrichment procedure	serial dilution

[Ref.: #67770]	Sample type/isolated from	Ginseng soil in Anseong
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65335]	16S rRNA gene sequence	KY056226		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium foetidum JCM 32085	GCA_004634245	contig	GenBank	2026681 tax ID	*
[Ref.: #66792]	Flavobacterium foetidum strain JCM 32085	2026681.3	wgs	PATRIC	2026681 tax ID	*
[Ref.: #66792]	Flavobacterium foetidum JCM 32085	2882034188	draft	JGI IMG/M	2026681 tax ID	*

[Ref.: #65335]

GC-content

30.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium foetidum strain JCM 32085 PATRIC: 2026681.3
[Ref.: #69480]	anaerobic	no	99.603	yes
[Ref.: #69480]	gram-positive	no	99.99	yes
[Ref.: #69480]	spore-forming	no	99.99	yes
[Ref.: #69480]	thermophile	no	99.977	yes
[Ref.: #69480]	motile	no	74.876	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium foetidum strain JCM 32085 PATRIC: 2026681.3
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #65335]

Culture collection no.

KACC 19302, JCM 32085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium foetidum sp. nov., isolated from ginseng soil.	Bu JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002553	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65335

Ji-Hye Bu, Chang-Jun Cha: Flavobacterium foetidum sp. nov., isolated from ginseng soil. IJSEM 68: 616 - 622 2018 ( DOI 10.1099/ijsem.0.002553 , PubMed 29303696 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Flavobacterium foetidum strain JCM 32085

Flavobacterium foetidum strain JCM 32085

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