Name: Niveispirillum lacus 41640
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158605

Type strain:

Species: Niveispirillum lacus

Strain Designation: 41640

Culture col. no.: CGMCC 1.12980, LMG 28363

NCBI tax ID(s): 1981099 (species)

Section

Niveispirillum lacus 41640 is a Gram-negative, motile, rod-shaped bacterium that was isolated from cyanobacterial aggregate in eutrophic Lake Taihu.

Gram-negative
motile
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Niveispirillum*
	Species	**Niveispirillum lacus**
	Full Scientific Name (LPSN)	Niveispirillum lacus Cai et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65325]	Gram stain	negative

[Ref.: #65325]	Cell length	1.2-2.2 µm

[Ref.: #65325]	Cell width	0.6-1.2 µm

[Ref.: #65325]	Cell shape	rod-shaped

[Ref.: #65325]	Motility	yes

[Ref.: #65325]	Flagellum arrangement	monotrichous, polar

[Ref.: #65325]	Colony color	light brown
[Ref.: #65325]	Incubation period	1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65325]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65325]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65325]			growth	20-32 °C
[Ref.: #65325]			optimum	28 °C

[Ref.: #65325]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65325]			optimum	7
[Ref.: #65325]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65325]		NaCl		growth	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65325]	casein	-	hydrolysis
[Ref.: #65325]	D-glucose ChEBI	+	assimilation
[Ref.: #65325]	D-glycerate ChEBI	+	builds acid from
[Ref.: #65325]	D-mannitol ChEBI	-	assimilation
[Ref.: #65325]	D-mannose ChEBI	+	assimilation
[Ref.: #65325]	D-sorbitol ChEBI	-	assimilation
[Ref.: #65325]	decanoate ChEBI	-	assimilation
[Ref.: #65325]	esculin ChEBI	+	hydrolysis
[Ref.: #65325]	gelatin ChEBI	-	hydrolysis
[Ref.: #65325]	L-arabinose ChEBI	-	assimilation
[Ref.: #65325]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65325]	lactose ChEBI	-	assimilation
[Ref.: #65325]	lactose ChEBI	+	builds acid from
[Ref.: #65325]	malate ChEBI	-	assimilation
[Ref.: #65325]	maltose ChEBI	+	assimilation
[Ref.: #65325]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65325]	nitrate ChEBI	+	reduction
[Ref.: #65325]	phenylacetate ChEBI	-	assimilation
[Ref.: #65325]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65325]	sodium citrate ChEBI	-	assimilation
[Ref.: #65325]	starch ChEBI	+	hydrolysis
[Ref.: #65325]	sucrose ChEBI	+	assimilation
[Ref.: #65325]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65325]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65325]		acetoin ChEBI	no
[Ref.: #65325]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65325]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65325]	acid phosphatase	+	3.1.3.2
[Ref.: #65325]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65325]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65325]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65325]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65325]	beta-galactosidase	-	3.2.1.23
[Ref.: #65325]	beta-glucosidase	-	3.2.1.21
[Ref.: #65325]	catalase	+	1.11.1.6
[Ref.: #65325]	cystine arylamidase	-	3.4.11.3
[Ref.: #65325]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65325]	esterase (C 4)	+
[Ref.: #65325]	esterase Lipase (C 8)	+
[Ref.: #65325]	leucine arylamidase	+	3.4.11.1
[Ref.: #65325]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65325]	trypsin	+	3.4.21.4
[Ref.: #65325]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	tryptophan metabolism	78.95	30 of 38
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	pyrimidine metabolism	75.56	34 of 45
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	75	6 of 8
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	lactate fermentation	75	3 of 4
[Ref.: #66794]	lipid metabolism	74.19	23 of 31
[Ref.: #66794]	3-phenylpropionate degradation	73.33	11 of 15
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	chlorophyll metabolism	72.22	13 of 18
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	lysine metabolism	71.43	30 of 42
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	oxidative phosphorylation	65.93	60 of 91
[Ref.: #66794]	isoprenoid biosynthesis	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	phenol degradation	60	12 of 20
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	androgen and estrogen metabolism	56.25	9 of 16
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	arginine metabolism	54.17	13 of 24
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	vitamin B12 metabolism	47.06	16 of 34
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	4-hydroxymandelate degradation	44.44	4 of 9
[Ref.: #66794]	polyamine pathway	43.48	10 of 23
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	carotenoid biosynthesis	36.36	8 of 22
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	ascorbate metabolism	31.82	7 of 22
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65325]	Sample type/isolated from	cyanobacterial aggregate in eutrophic Lake Taihu
[Ref.: #65325]	Geographic location (country and/or sea, region)	Meiliang Bay in Lake Taihu
[Ref.: #65325]	Country	China
[Ref.: #65325]	Country ISO 3 Code	CHN
[Ref.: #65325]	Continent	Asia
[Ref.: #65325]	Geographic location	31.5000°/120.1830°
[Ref.: #65325]	Enrichment culture	R2A agar
[Ref.: #65325]	Enrichment culture temperature	30 ̊C
[Ref.: #65325]	Isolation/enrichment procedure	aggregates were transferred to 500 ml beakers and left at room temperature for 2 h. This resulted in floatation of the cyanobacterial aggregates to the top of the beaker. Several of the largest aggregates were selected for testing and washed three times in sterile lake water. The washed aggregates were then mixed with sterile sand followed by vortexing for 60 s. Suspended cells were then serially diluted and the dilutions were plated on R2A agar plates incubated at 30°C to isolate bacteria.
* marker position based on {}

Isolation sources categories

#Host	#Microbial	#Bacteria
#Environmental	#Aquatic	#Lake (large)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65325]	16S rRNA gene sequence	MF776580		GenBank

[Ref.: #65325]

GC-content

62.2 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #65325]

Culture collection no.

CGMCC 1.12980, LMG 28363

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Niveispirillum lacus sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake.	Cai H, Cui H, Zeng Y, Wang Y, Jiang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002526	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65325

Haiyuan Cai, Henglin Cui, Yonghui Zeng, Yanan Wang, Helong Jiang: Niveispirillum lacus sp. nov., isolated from cyanobacterial aggregates in a eutrophic lake. IJSEM 68: 507 - 512 2018 ( DOI 10.1099/ijsem.0.002526 , PubMed 29239717 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

* These data were automatically processed and therefore are not curated

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