Pedobacter quisquiliarum C62-2 | Type strain | CGMCC 1.15343, NBRC 111767

Strain identifier

BacDive ID: 158603

Type strain:

Species: Pedobacter quisquiliarum

Strain Designation: C62-2

Culture col. no.: CGMCC 1.15343, NBRC 111767

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Pedobacter quisquiliarum C62-2 is an aerobe, gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from activated sludge.

colony-forming
gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Bacteroidetes
	Class	Sphingobacteriia
	Order	Sphingobacteriales
	Family	Sphingobacteriaceae
	Genus	Pedobacter
	Species	Pedobacter quisquiliarum
	Full Scientific Name (PNU)	Pedobacter quisquiliarum Zhang et al. 2018

Information on morphological and physiological propertiesMorphology

[Ref.: #65319]	Gram stain	negative
[Ref.: #65319]	Cell length	0.7-1.8 µm
[Ref.: #65319]	Cell width	0.45-0.68 µm
[Ref.: #65319]	Cell shape	rod-shaped
[Ref.: #65319]	Motility	no

[Ref.: #65319]	Colony size	1 mm
[Ref.: #65319]	Colony color	light-yellow
[Ref.: #65319]	Colony shape	circular
[Ref.: #65319]	Incubation period	3 days
[Ref.: #65319]	Cultivation medium used	R2A

[Ref.: #65319]	Pigment production	no
[Ref.: #65319]	Pigment name	flexirubin-type pigments

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #65319]

Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65319]			growth	20-37 ̊C
[Ref.: #65319]			optimum	30 ̊C

[Ref.: #65319]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65319]			optimum	7
[Ref.: #65319]			growth	5-8

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #65319]

Oxygen tolerance

aerobe

[Ref.: #65319]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65319]		NaCl		growth	0-3	%(w/v)
[Ref.: #65319]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65319]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #65319]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65319]	amygdalin ChEBI	+	builds acid from
[Ref.: #65319]	arbutin ChEBI	+	builds acid from
[Ref.: #65319]	cellobiose ChEBI	+	builds acid from
[Ref.: #65319]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65319]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65319]	D-fructose ChEBI	+	builds acid from
[Ref.: #65319]	D-fucose ChEBI	-	builds acid from
[Ref.: #65319]	D-galactose ChEBI	+	builds acid from
[Ref.: #65319]	D-glucose ChEBI	+	builds acid from
[Ref.: #65319]	D-lyxose ChEBI	+	builds acid from
[Ref.: #65319]	D-mannose ChEBI	+	builds acid from
[Ref.: #65319]	D-ribose ChEBI	-	builds acid from
[Ref.: #65319]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65319]	D-xylose ChEBI	+	builds acid from
[Ref.: #65319]	erythritol ChEBI	-	builds acid from
[Ref.: #65319]	esculin ChEBI	+	builds acid from
[Ref.: #65319]	esculin ChEBI	+	hydrolysis
[Ref.: #65319]	galactitol ChEBI	-	builds acid from
[Ref.: #65319]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65319]	gluconate ChEBI	+	builds acid from
[Ref.: #65319]	glucose ChEBI	-	fermentation
[Ref.: #65319]	glycerol ChEBI	-	builds acid from
[Ref.: #65319]	glycogen ChEBI	-	builds acid from
[Ref.: #65319]	inulin ChEBI	+	builds acid from
[Ref.: #65319]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65319]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65319]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65319]	L-xylose ChEBI	-	builds acid from
[Ref.: #65319]	lactose ChEBI	+	builds acid from
[Ref.: #65319]	maltose ChEBI	+	builds acid from
[Ref.: #65319]	mannitol ChEBI	-	builds acid from
[Ref.: #65319]	melezitose ChEBI	+	builds acid from
[Ref.: #65319]	melibiose ChEBI	+	builds acid from
[Ref.: #65319]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65319]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65319]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #65319]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65319]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65319]	nitrate ChEBI	-	reduction
[Ref.: #65319]	raffinose ChEBI	+	builds acid from
[Ref.: #65319]	ribitol ChEBI	-	builds acid from
[Ref.: #65319]	salicin ChEBI	+	builds acid from
[Ref.: #65319]	sorbitol ChEBI	-	builds acid from
[Ref.: #65319]	starch ChEBI	+	builds acid from
[Ref.: #65319]	sucrose ChEBI	+	builds acid from
[Ref.: #65319]	trehalose ChEBI	+	builds acid from
[Ref.: #65319]	turanose ChEBI	+	builds acid from
[Ref.: #65319]	tween 80 ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65319]	acetoin ChEBI	no
[Ref.: #65319]	hydrogen sulfide ChEBI	no
[Ref.: #65319]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #65319]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65319]	acid phosphatase	+	3.1.3.2
[Ref.: #65319]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65319]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65319]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65319]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65319]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65319]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65319]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65319]	beta-galactosidase	-	3.2.1.23
[Ref.: #65319]	beta-glucosidase	-	3.2.1.21
[Ref.: #65319]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65319]	catalase	+	1.11.1.6
[Ref.: #65319]	cystine arylamidase	-	3.4.11.3
[Ref.: #65319]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65319]	esterase (C 4)	+
[Ref.: #65319]	esterase Lipase (C 8)	+
[Ref.: #65319]	leucine arylamidase	+	3.4.11.1
[Ref.: #65319]	lipase (C 14)	-
[Ref.: #65319]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65319]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65319]	urease	-	3.5.1.5
[Ref.: #65319]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #65319]	Sample type/isolated from	activated sludge
[Ref.: #65319]	Geographic location (country and/or sea, region)	Shanghang county, Fujian Province
[Ref.: #65319]	Country	China
[Ref.: #65319]	Country ISO 3 Code	CHN
[Ref.: #65319]	Continent	Asia
[Ref.: #65319]	Geographic location	25.6286°/116.8200°
[Ref.: #65319]	Enrichment culture	R2A
[Ref.: #65319]	Enrichment culture temperature	30 ̊C
[Ref.: #65319]	Isolation/enrichment procedure	Activated sludge (1 g) was incubated at 30°C using R2A agar (Difco). After enriching three times, the enriched culture was serially diluted (10-fold) intubes containing 0.9 ml of R2A broth. Aliquots of 0.2 ml were spread on R2A agar plates to cultivate separated colonies.

Isolation sources categories

#Engineered

#Waste

#Activated sludge

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65319]	16S rRNA gene sequence	KU973598		GenBank

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GC-content

43.2 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collectionsExternal links

[Ref.: #65319]

Culture collection no.

CGMCC 1.15343, NBRC 111767

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#65319

Bo Zhang, Zhi-Qiang Liu, Yu-Guo Zheng: Pedobacter quisquiliarum sp. nov., isolated from activated sludge. IJSEM 68: 438 - 442 2018 ( DOI 10.1099/ijsem.0.002531 )

* These References are textmined

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