Pseudooceanicola lipolyticus (KCTC 52654, MCCC 1K03317, 157)

Name: Pseudooceanicola lipolyticus (KCTC 52654, MCCC 1K03317, 157)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158599

Type strain

Strain Designation 157

Culture col. no. KCTC 52654 MCCC 1K03317 157

NCBI tax ID(s) 2029104

Special Collections KCTC Literature strains

Links

Pseudooceanicola lipolyticus 157 is a Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from seawater .

Gram-negative rod-shaped colony-forming genome sequence 16S sequence

Name and taxonomic classification

SI-ID 26392

KCTC 52654

@ref 20215

Last LPSN update 2025-12-16 10:08:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Pseudooceanicola

Species Pseudooceanicola lipolyticus

Full scientific name Pseudooceanicola lipolyticus Huang et al. 2018

Synonyms (1)

"Aliioceanicola lipolyticus"

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
65315	negative	1.5-2.5 µm	0.6-1 µm	rod-shaped
125439	negative
125438	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65315	1 mm	cream	circular	3 days	marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
65315	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
65315	positive	growth	15-40
65315	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
65315	positive	optimum	7
65315	positive	growth	6-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.6

Spore formation

@ref	Spore formation
65315
125439
125438

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65315	NaCl	positive	growth	0.5-10 %(w/v)
65315	NaCl	positive	optimum	3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65315	17128 ChEBI	adipate	+	carbon source
65315	12936 ChEBI	D-galactose	-	builds acid from
65315	17634 ChEBI	D-glucose	-	carbon source
65315	16899 ChEBI	D-mannitol	+	builds acid from
65315	16899 ChEBI	D-mannitol	+	carbon source
65315	16024 ChEBI	D-mannose	-	builds acid from
65315	16024 ChEBI	D-mannose	-	carbon source
65315	17924 ChEBI	D-sorbitol	-	builds acid from
65315	27689 ChEBI	decanoate	-	carbon source
65315	91260 ChEBI	disodium malate	-	carbon source
65315	4853 ChEBI	esculin	-	carbon source
65315	4853 ChEBI	esculin	-	hydrolysis
65315	16236 ChEBI	ethanol	-	builds acid from
65315	16236 ChEBI	ethanol	-	carbon source
65315	5291 ChEBI	gelatin	-	hydrolysis
65315	17234 ChEBI	glucose	-	builds acid from
65315	24898 ChEBI	isoleucine	+	carbon source
65315	16977 ChEBI	L-alanine	+	carbon source
65315	30849 ChEBI	L-arabinose	-	carbon source
65315	17561 ChEBI	L-cysteine	+	carbon source
65315	62345 ChEBI	L-rhamnose	-	builds acid from
65315	17266 ChEBI	L-sorbose	-	builds acid from
65315	17266 ChEBI	L-sorbose	-	carbon source
65315	17716 ChEBI	lactose	-	builds acid from
65315	17716 ChEBI	lactose	-	carbon source
65315	25115 ChEBI	malate	+	carbon source
65315	17306 ChEBI	maltose	-	builds acid from
65315	17306 ChEBI	maltose	-	carbon source
65315	6731 ChEBI	melezitose	-	builds acid from
65315	17268 ChEBI	myo-inositol	-	builds acid from
65315	506227 ChEBI	N-acetylglucosamine	+	carbon source
65315	17632 ChEBI	nitrate	-	reduction
65315		peptone	+	carbon source
65315	18401 ChEBI	phenylacetate	+	carbon source
65315	16634 ChEBI	raffinose	-	builds acid from
65315	16634 ChEBI	raffinose	-	carbon source
65315	15963 ChEBI	ribitol	-	builds acid from
65315	32954 ChEBI	sodium acetate	+	carbon source
65315	53258 ChEBI	sodium citrate	+	carbon source
65315	84997 ChEBI	sodium gluconate	-	carbon source
65315	28017 ChEBI	starch	-	hydrolysis
65315	17992 ChEBI	sucrose	-	builds acid from
65315	17992 ChEBI	sucrose	-	carbon source
65315	27082 ChEBI	trehalose	-	builds acid from
65315	27082 ChEBI	trehalose	+	carbon source
65315		tryptone	+	carbon source
65315	53424 ChEBI	tween 20	+	hydrolysis
65315	53423 ChEBI	tween 40	+	hydrolysis
65315	53425 ChEBI	tween 60	+	hydrolysis
65315	53426 ChEBI	tween 80	+	hydrolysis
65315	16199 ChEBI	urea	+	hydrolysis
65315		yeast extract	+	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
65315	2676	amoxicillin	20 µg (disc)
65315	28971	ampicillin	10 µg (disc)
65315	28669	bacitracin
65315	3393	carbenicillin	100 µg (disc)
65315	209807	cefoxitin	30 µg (disc)
65315	17698	chloramphenicol	30 µg (disc)
65315	48923	erythromycin	15 µg (disc)
65315	17833	gentamicin	10 µg (disc)
65315	6104	kanamycin	30 µg (disc)
65315	71415	nitrofurantoin	300 µg (disc)
65315	28368	novobiocin	30 µg (disc)
65315	7660	nystatin
65315	17334	penicillin	10 µg (disc)
65315	8309	polymyxin b	300 Unit (disc)
65315	28077	rifampicin	5 µg (disc)
65315	17076	streptomycin	10 µg (disc)
65315	28864	tobramycin	10 µg (disc)
65315	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65315	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65315	acid phosphatase	+	3.1.3.2
65315	alkaline phosphatase	+	3.1.3.1
65315	alpha-chymotrypsin	-	3.4.21.1
65315	alpha-fucosidase	-	3.2.1.51
65315	alpha-galactosidase	-	3.2.1.22
65315	alpha-glucosidase	-	3.2.1.20
65315	alpha-mannosidase	-	3.2.1.24
65315	arginine dihydrolase	-	3.5.3.6
65315	beta-galactosidase	-	3.2.1.23
65315	beta-glucosidase	-	3.2.1.21
65315	beta-glucuronidase	-	3.2.1.31
65315	catalase	+	1.11.1.6
65315	cystine arylamidase	+	3.4.11.3
65315	cytochrome oxidase	+	1.9.3.1
65315	esterase (C 4)	+
65315	esterase Lipase (C 8)	+
65315	leucine arylamidase	+	3.4.11.1
65315	lipase (C 14)	-
65315	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65315	naphthol-AS-BI-phosphohydrolase	+
65315	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	NAD metabolism	100	18 of 18
66794	CMP-KDO biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	allantoin degradation	100	9 of 9
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	octane oxidation	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	ethanol fermentation	100	2 of 2
66794	vitamin B1 metabolism	100	13 of 13
66794	denitrification	100	2 of 2
66794	alanine metabolism	93.1	27 of 29
66794	citric acid cycle	92.86	13 of 14
66794	leucine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	pentose phosphate pathway	90.91	10 of 11
66794	proline metabolism	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	pyrimidine metabolism	86.67	39 of 45
66794	purine metabolism	86.17	81 of 94
66794	propanol degradation	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	phenylalanine metabolism	84.62	11 of 13
66794	tryptophan metabolism	84.21	32 of 38
66794	gallate degradation	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	creatinine degradation	80	4 of 5
66794	glycine betaine biosynthesis	80	4 of 5
66794	4-hydroxyphenylacetate degradation	80	8 of 10
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	3-phenylpropionate degradation	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	tyrosine metabolism	78.57	11 of 14
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	methionine metabolism	76.92	20 of 26
66794	histidine metabolism	75.86	22 of 29
66794	arginine metabolism	75	18 of 24
66794	carnitine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	lactate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	cyclohexanol degradation	75	3 of 4
66794	toluene degradation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cysteine metabolism	72.22	13 of 18
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	glutathione metabolism	71.43	10 of 14
66794	heme metabolism	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	phenol degradation	70	14 of 20
66794	urea cycle	69.23	9 of 13
66794	oxidative phosphorylation	67.03	61 of 91
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	lipid metabolism	64.52	20 of 31
66794	degradation of pentoses	64.29	18 of 28
66794	non-pathway related	63.16	24 of 38
66794	ketogluconate metabolism	62.5	5 of 8
66794	androgen and estrogen metabolism	62.5	10 of 16
66794	degradation of sugar alcohols	62.5	10 of 16
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	glycogen metabolism	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	degradation of sugar acids	52	13 of 25
66794	ribulose monophosphate pathway	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	myo-inositol biosynthesis	50	5 of 10
66794	selenocysteine biosynthesis	50	3 of 6
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	arachidonic acid metabolism	44.44	8 of 18
66794	nitrate assimilation	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	3-chlorocatechol degradation	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	starch degradation	40	4 of 10
66794	O-antigen biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	metabolism of disaccharids	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	chlorophyll metabolism	22.22	4 of 18
66794	daunorubicin biosynthesis	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
65315	seawater (depth of 100 m)	2015-12	Philippine Sea	Northwest Pacific	natural seawater agar	natural seawater supplemented with 0.05 % peptone, 0.01 % yeast extract and agar 1.5 %, w/v, pH 7.2-7.4	1 month	25-28

Taxonmaps

69479

Global distribution of 16S sequence KY273603 (>99% sequence identity) for Pseudooceanicola lipolyticus subclade from Microbeatlas

Aquatic Samples	186
Soil Samples
Animal Samples	1
Plant Samples
Total Samples	187

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	157.Hcov.spades_scaffolds_517 assembly for Pseudooceanicola lipolyticus 157	scaffold	GCA_002786325	2029104.3	2837358148	2029104

Genome browser: GCA_002786325

16S sequences

@ref	Description	Accession	Database
65315	Pseudooceanicola lipolyticus strain 157 16S ribosomal RNA gene, partial sequence	KY273603

GC content

@ref	GC-content (mol%)	Method
65315	64.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudooceanicola lipolyticus 157
NCBI: GCA_002786325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	61.50	no
125439	gram_stain	BacteriaNetⓘ	negative	97.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudooceanicola lipolyticus 157
NCBI: GCA_002786325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	yes
125438	anaerobic	anaerobicⓘ	no	95.25	no
125438	aerobic	aerobicⓘ	yes	81.45	no
125438	spore-forming	spore-formingⓘ	no	91.11	yes
125438	thermophilic	thermophileⓘ	no	97.72	yes
125438	flagellated	motile2+ⓘ	yes	50.90	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudooceanicola lipolyticus sp. nov., a marine alphaproteobacterium, reclassification of Oceanicola flagellatus as Pseudooceanicola flagellatus comb. nov. and emended description of the genus Pseudooceanicola.	Huang MM, Guo LL, Wu YH, Lai QL, Shao ZZ, Wang CS, Wu M, Xu XW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002521	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65315	Meng-Meng Huang, Li-Li Guo, Yue-Hong Wu, Qi-Liang Lai, Zong-Ze Shao, Chun-Sheng Wang, Min Wu, Xue-Wei Xu: Pseudooceanicola lipolyticus sp. nov., a marine alphaproteobacterium, reclassification of Oceanicola flagellatus as Pseudooceanicola flagellatus comb. nov. and emended description of the genus Pseudooceanicola. IJSEM 68: 409 - 415 2018 ( DOI 10.1099/ijsem.0.002521 , PubMed 29219804 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudooceanicola lipolyticus (KCTC 52654, MCCC 1K03317, 157)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002786325

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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