Name: Mucilaginibacter amnicola TAPP7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158597

Type strain:

Species: Mucilaginibacter amnicola

Strain Designation: TAPP7

Culture col. no.: BCRC 80976, LMG 29556, KCTC 52238

Strain history: <- Wen-Ming Chen, National Kaohsiung Marine Univ..

NCBI tax ID(s): 1815558 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Mucilaginibacter amnicola TAPP7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from fresh water sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter amnicola**
	Full Scientific Name (LPSN)	Mucilaginibacter amnicola Chen et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65313]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65313]	Cell length	0.8-1.3 µm

[Ref.: #65313]	Cell width	0.5-0.6 µm

[Ref.: #65313]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65313]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #65313]	Colony size	2-3.5 mm
[Ref.: #65313]	Colony color	pink
[Ref.: #65313]	Colony shape	circular
[Ref.: #65313]	Incubation period	2 days
[Ref.: #65313]	Cultivation medium used	R2A

[Ref.: #65313]	Colony shape	irregular

[Ref.: #65313]	Pigment production	no
[Ref.: #65313]	Pigment name	flexirubin-type pigments
[Ref.: #65313]	Pigment production	yes
[Ref.: #65313]	Pigment name	carotinoid pigments

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

		Temperature
[Ref.: #65313]	growth	10-30 °C
[Ref.: #65313]	optimum	15-20 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #65313]			optimum	6
[Ref.: #65313]			growth	4-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65313]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65313]		NaCl		growth	0-1	%
[Ref.: #65313]		NaCl		optimum	0.5	%

[Ref.: #65313]	Observation	Positive for poly-b-hydroxybutyrate accumulation.
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65313]	2,3-butanediol ChEBI	-	respiration
[Ref.: #65313]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65313]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65313]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #65313]	2-oxoglutarate ChEBI	-	respiration
[Ref.: #65313]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #65313]	3-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65313]	4-hydroxy-L-proline ChEBI	-	respiration
[Ref.: #65313]	4-hydroxybutyrate ChEBI	-	respiration
[Ref.: #65313]	4-hydroxyphenylacetic acid ChEBI	-	respiration
[Ref.: #65313]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65313]	acetate ChEBI	-	respiration
[Ref.: #65313]	adipate ChEBI	-	assimilation
[Ref.: #65313]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #65313]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #65313]	alpha-lactose ChEBI	+	respiration
[Ref.: #65313]	amygdalin ChEBI	+	builds acid from
[Ref.: #65313]	arabinose ChEBI	-	assimilation
[Ref.: #65313]	arbutin ChEBI	+	builds acid from
[Ref.: #65313]	bromosuccinate ChEBI	-	respiration
[Ref.: #65313]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #65313]	casein	-	hydrolysis
[Ref.: #65313]	cellobiose ChEBI	+	builds acid from
[Ref.: #65313]	cellobiose ChEBI	+	respiration
[Ref.: #65313]	cis-aconitate ChEBI	-	respiration
[Ref.: #65313]	citrate ChEBI	-	assimilation
[Ref.: #65313]	citrate ChEBI	-	respiration
[Ref.: #65313]	crab shell chitin	-	hydrolysis
[Ref.: #65313]	D-alanine ChEBI	-	respiration
[Ref.: #65313]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65313]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65313]	D-arabitol ChEBI	-	respiration
[Ref.: #65313]	D-fructose ChEBI	+	builds acid from
[Ref.: #65313]	D-fructose ChEBI	+	respiration
[Ref.: #65313]	D-fucose ChEBI	-	builds acid from
[Ref.: #65313]	D-galactonic acid lactone ChEBI	-	respiration
[Ref.: #65313]	D-galactose ChEBI	+	builds acid from
[Ref.: #65313]	D-galactose ChEBI	+	respiration
[Ref.: #65313]	D-galacturonic acid ChEBI	-	respiration
[Ref.: #65313]	D-glucarate ChEBI	-	respiration
[Ref.: #65313]	D-gluconate ChEBI	+	respiration
[Ref.: #65313]	D-glucosaminic acid ChEBI	+	respiration
[Ref.: #65313]	D-glucose ChEBI	+	builds acid from
[Ref.: #65313]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #65313]	D-glucuronate ChEBI	-	respiration
[Ref.: #65313]	D-lyxose ChEBI	+	builds acid from
[Ref.: #65313]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65313]	D-mannitol ChEBI	-	respiration
[Ref.: #65313]	D-mannose ChEBI	+	builds acid from
[Ref.: #65313]	D-mannose ChEBI	+	respiration
[Ref.: #65313]	D-psicose ChEBI	+	respiration
[Ref.: #65313]	D-ribose ChEBI	-	builds acid from
[Ref.: #65313]	D-serine ChEBI	-	respiration
[Ref.: #65313]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65313]	D-sorbitol ChEBI	-	respiration
[Ref.: #65313]	D-tagatose ChEBI	+	builds acid from
[Ref.: #65313]	D-xylose ChEBI	+	builds acid from
[Ref.: #65313]	decanoate ChEBI	-	assimilation
[Ref.: #65313]	dextrin ChEBI	+	respiration
[Ref.: #65313]	DL-carnitine ChEBI	+	respiration
[Ref.: #65313]	dna ChEBI	+	hydrolysis
[Ref.: #65313]	erythritol ChEBI	-	builds acid from
[Ref.: #65313]	erythritol ChEBI	-	respiration
[Ref.: #65313]	esculin ChEBI	+	builds acid from
[Ref.: #65313]	esculin ChEBI	+	hydrolysis
[Ref.: #65313]	ethanolamine ChEBI	-	respiration
[Ref.: #65313]	formate ChEBI	-	respiration
[Ref.: #65313]	galactitol ChEBI	-	builds acid from
[Ref.: #65313]	gamma-aminobutyric acid ChEBI	-	respiration
[Ref.: #65313]	gelatin ChEBI	-	hydrolysis
[Ref.: #65313]	gentiobiose ChEBI	+	builds acid from
[Ref.: #65313]	gentiobiose ChEBI	+	respiration
[Ref.: #65313]	gluconate ChEBI	-	assimilation
[Ref.: #65313]	gluconate ChEBI	-	builds acid from
[Ref.: #65313]	glucose ChEBI	-	builds acid from
[Ref.: #65313]	glucose ChEBI	+	assimilation
[Ref.: #65313]	glucose 1-phosphate ChEBI	-	respiration
[Ref.: #65313]	glucuronamide ChEBI	-	respiration
[Ref.: #65313]	glycerol ChEBI	-	builds acid from
[Ref.: #65313]	glycerol ChEBI	-	respiration
[Ref.: #65313]	glycerol 1-phosphate ChEBI	-	respiration
[Ref.: #65313]	glycogen ChEBI	-	builds acid from
[Ref.: #65313]	glycogen ChEBI	-	respiration
[Ref.: #65313]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #65313]	glycyl-l-glutamate ChEBI	-	respiration
[Ref.: #65313]	inosine ChEBI	-	respiration
[Ref.: #65313]	inulin ChEBI	+	builds acid from
[Ref.: #65313]	itaconate ChEBI	-	respiration
[Ref.: #65313]	L-alaninamide ChEBI	+	respiration
[Ref.: #65313]	L-alanine ChEBI	-	respiration
[Ref.: #65313]	L-alanylglycine ChEBI	-	respiration
[Ref.: #65313]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65313]	L-arabinose ChEBI	+	respiration
[Ref.: #65313]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65313]	L-asparagine ChEBI	-	respiration
[Ref.: #65313]	L-aspartate ChEBI	-	respiration
[Ref.: #65313]	L-fucose ChEBI	-	builds acid from
[Ref.: #65313]	L-fucose ChEBI	-	respiration
[Ref.: #65313]	L-glutamate ChEBI	+	respiration
[Ref.: #65313]	L-histidine ChEBI	-	respiration
[Ref.: #65313]	L-leucine ChEBI	-	respiration
[Ref.: #65313]	L-ornithine ChEBI	-	respiration
[Ref.: #65313]	L-phenylalanine ChEBI	-	respiration
[Ref.: #65313]	L-proline ChEBI	+	respiration
[Ref.: #65313]	L-pyroglutamic acid ChEBI	-	respiration
[Ref.: #65313]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65313]	L-rhamnose ChEBI	-	respiration
[Ref.: #65313]	L-serine ChEBI	-	respiration
[Ref.: #65313]	L-sorbose ChEBI	+	builds acid from
[Ref.: #65313]	L-threonine ChEBI	+	respiration
[Ref.: #65313]	L-xylose ChEBI	-	builds acid from
[Ref.: #65313]	lactate ChEBI	-	respiration
[Ref.: #65313]	lactose ChEBI	+	builds acid from
[Ref.: #65313]	lactulose ChEBI	+	respiration
[Ref.: #65313]	malate ChEBI	-	assimilation
[Ref.: #65313]	malonate ChEBI	-	respiration
[Ref.: #65313]	maltose ChEBI	+	assimilation
[Ref.: #65313]	maltose ChEBI	+	builds acid from
[Ref.: #65313]	maltose ChEBI	+	respiration
[Ref.: #65313]	mannitol ChEBI	-	assimilation
[Ref.: #65313]	mannose ChEBI	+	assimilation
[Ref.: #65313]	melezitose ChEBI	+	builds acid from
[Ref.: #65313]	melibiose ChEBI	+	builds acid from
[Ref.: #65313]	melibiose ChEBI	+	respiration
[Ref.: #65313]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #65313]	methyl beta-D-glucopyranoside ChEBI	+	respiration
[Ref.: #65313]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #65313]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #65313]	methyl pyruvate ChEBI	+	respiration
[Ref.: #65313]	monomethyl succinate ChEBI	-	respiration
[Ref.: #65313]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65313]	myo-inositol ChEBI	-	respiration
[Ref.: #65313]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #65313]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65313]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65313]	N-acetylglucosamine ChEBI	+	respiration
[Ref.: #65313]	nitrate ChEBI	-	reduction
[Ref.: #65313]	phenylacetate ChEBI	-	assimilation
[Ref.: #65313]	phenylethylamine ChEBI	-	respiration
[Ref.: #65313]	propionate ChEBI	-	respiration
[Ref.: #65313]	putrescine ChEBI	-	respiration
[Ref.: #65313]	quinate ChEBI	-	respiration
[Ref.: #65313]	raffinose ChEBI	+	builds acid from
[Ref.: #65313]	raffinose ChEBI	+	respiration
[Ref.: #65313]	ribitol ChEBI	-	respiration
[Ref.: #65313]	ribitol ChEBI	-	builds acid from
[Ref.: #65313]	salicin ChEBI	+	builds acid from
[Ref.: #65313]	sebacic acid ChEBI	-	respiration
[Ref.: #65313]	starch ChEBI	-	hydrolysis
[Ref.: #65313]	starch ChEBI	+	builds acid from
[Ref.: #65313]	succinamate ChEBI	-	respiration
[Ref.: #65313]	succinate ChEBI	-	respiration
[Ref.: #65313]	sucrose ChEBI	+	builds acid from
[Ref.: #65313]	sucrose ChEBI	+	respiration
[Ref.: #65313]	thymidine ChEBI	-	respiration
[Ref.: #65313]	trehalose ChEBI	+	builds acid from
[Ref.: #65313]	trehalose ChEBI	+	respiration
[Ref.: #65313]	turanose ChEBI	+	builds acid from
[Ref.: #65313]	turanose ChEBI	+	respiration
[Ref.: #65313]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65313]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65313]	tween 40 ChEBI	+	respiration
[Ref.: #65313]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65313]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65313]	tween 80 ChEBI	-	respiration
[Ref.: #65313]	uridine ChEBI	-	respiration
[Ref.: #65313]	urocanic acid ChEBI	-	respiration
[Ref.: #65313]	xylitol ChEBI	-	builds acid from
[Ref.: #65313]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65313]	ampicillin ChEBI				yes	11	µg (disc)
[Ref.: #65313]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65313]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #65313]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #65313]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #65313]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #65313]	penicillin g ChEBI				yes	10	Unit (disc)
[Ref.: #65313]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65313]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65313]	tetracycline ChEBI	yes	30	µg (disc)

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic resistance	Concentration
[Ref.: #65313]		25	sulfamerazine ChEBI	yes	23.75	µg (disc)
[Ref.: #65313]		25	trimethoprim ChEBI	yes	1.25	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #65313]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65313]	acid phosphatase	+	3.1.3.2
[Ref.: #65313]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65313]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65313]	alpha-fucosidase	+	3.2.1.51
[Ref.: #65313]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65313]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65313]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65313]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65313]	beta-galactosidase	+	3.2.1.23
[Ref.: #65313]	beta-glucosidase	+	3.2.1.21
[Ref.: #65313]	beta-glucuronidase	+	3.2.1.31
[Ref.: #65313]	catalase	-	1.11.1.6
[Ref.: #65313]	cystine arylamidase	+	3.4.11.3
[Ref.: #65313]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65313]	esterase (C 4)	+
[Ref.: #65313]	esterase Lipase (C 8)	+
[Ref.: #65313]	leucine arylamidase	+	3.4.11.1
[Ref.: #65313]	lipase (C 14)	-
[Ref.: #65313]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65313]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65313]	trypsin	-	3.4.21.4
[Ref.: #65313]	urease	-	3.5.1.5
[Ref.: #65313]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65313]

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	35.8
C15:0 iso	17.2
C16:0	8.2
C17:0 iso 3OH	6.1
C16:1ω5c	5.2
C14:0 anteiso	3.8
C18:0	3.1
C18:1ω9c	2.4
C15:1ω6c	2.1
C16:0 3OH	2.1
C15:0 2OH	1.9
C12:0	1.8
C16:0 10-methyl and/or iso-C17:1ω9c	1.8
C17:1ω8c	1.4
C17:0 iso	1.4
C17:0 3OH	1.2
C14:0	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65313]	Sample type/isolated from	fresh water sample
[Ref.: #65313]	Geographic location (country and/or sea, region)	Wanan Creek in the vicinity of Pingtung County
[Ref.: #65313]	Country	Taiwan, Province of China
[Ref.: #65313]	Country ISO 3 Code	TWN
[Ref.: #65313]	Continent	Asia
[Ref.: #65313]	Geographic location	22.6225°/120.6470°
[Ref.: #65313]	Enrichment culture	R2A agar
[Ref.: #65313]	Enrichment culture duration	3 days
[Ref.: #65313]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From fresh water, river
[Ref.: #67771]	Geographic location (country and/or sea, region)	Wanan Creek, the vicinity of Pingtung County
[Ref.: #67771]	Country	Taiwan, Province of China
[Ref.: #67771]	Country ISO 3 Code	TWN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Freshwater

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65313]	Mucilaginibacter sp. TAPP7 partial 16S rRNA gene, strain TAPP7	LT223124		GenBank ENA

[Ref.: #65313]	GC-content	45.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	45.6 mol%

Availability in culture collections External links

[Ref.: #65313]

Culture collection no.

BCRC 80976, LMG 29556, KCTC 52238

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae.	Ten LN, Jeon NY, Li W, Cho YJ, Kim MK, Lee SY, Rooney AP, Jung HY	Curr Microbiol	10.1007/s00284-019-01748-y	2019	*
Phylogeny	Mucilaginibacter amnicola sp. nov., isolated from a freshwater creek.	Chen WM, Hsieh TY, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002518	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65313

Wen-Ming Chen, Tsai-Ying Hsieh, Shih-Yi Sheu: Mucilaginibacter amnicola sp. nov., isolated from a freshwater creek. IJSEM 68: 394 - 401 2018 ( DOI 10.1099/ijsem.0.002518 , PubMed 29219806 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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