Thalassotalea atypica (JCM 31894, KCTC 52745, MCCC 1K03276)

Name: Thalassotalea atypica (JCM 31894, KCTC 52745, MCCC 1K03276)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158591

Type strain

Strain Designation RZG4-3-1

Culture col. no. JCM 31894 KCTC 52745 MCCC 1K03276 RZG4-3-1

NCBI tax ID(s) 2054316

Special Collections JCM KCTC Literature strains

History JCM <-- Y. Wang; Sch. of Life Sci. & Technol., Xinxiang Med. Univ., China; RZG4-3-1. KCTC <- Yan Wang, Xin Xiang Medical Univ.

Links

Thalassotalea atypica RZG4-3-1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27235

KCTC 52745,JCM 31894

@ref 20215

Last LPSN update 2026-05-29 08:44:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Colwelliaceae

Genus Thalassotalea

Species Thalassotalea atypica

Full scientific name Thalassotalea atypica Wang et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
65305	negative	1.5-2.5 µm	0.5-1 µm	rod-shaped
125439	negative					90.841

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65305	1-2 mm	yellow	circular	2-3 days	marine agar 2216

Pigmentation

@ref	Production	Name
65305		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth
65305	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
65305	positive	growth	4-30
65305	positive	optimum	24-28
67770	positive	growth	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
65305	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65305	aerobe
67771	aerobe
125439	obligate aerobe	99.181

Spore formation

@ref	Spore formation	Confidence
125439		96.874

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65305	NaCl	positive	growth	1-4 %(w/v)
65305	NaCl	positive	optimum	2 %(w/v)

Observation

65305

ObservationNaCl alone does not support growth; requires seawater or artificial seawater for growth.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65305	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	-	builds acid from
65305	30089 ChEBI	acetate	-	carbon source
65305	2509 ChEBI	agar	-	hydrolysis
65305	58187 ChEBI	alginate	+	carbon source
65305	58187 ChEBI	alginate	+	hydrolysis
65305	27613 ChEBI	amygdalin	+	builds acid from
65305	18305 ChEBI	arbutin	-	builds acid from
65305		casein	-	hydrolysis
65305	17057 ChEBI	cellobiose	-	builds acid from
65305	17057 ChEBI	cellobiose	-	carbon source
65305	17029 ChEBI	chitin	-	hydrolysis
65305	16947 ChEBI	citrate	-	carbon source
65305	17108 ChEBI	D-arabinose	-	builds acid from
65305	18333 ChEBI	D-arabitol	-	builds acid from
65305	15824 ChEBI	D-fructose	-	builds acid from
65305	28847 ChEBI	D-fucose	-	builds acid from
65305	12936 ChEBI	D-galactose	-	builds acid from
65305	12936 ChEBI	D-galactose	-	carbon source
65305	17634 ChEBI	D-glucose	-	builds acid from
65305	17634 ChEBI	D-glucose	-	carbon source
65305	62318 ChEBI	D-lyxose	-	builds acid from
65305	16899 ChEBI	D-mannitol	-	builds acid from
65305	16024 ChEBI	D-mannose	-	builds acid from
65305	16024 ChEBI	D-mannose	-	carbon source
65305	16988 ChEBI	D-ribose	-	builds acid from
65305	17924 ChEBI	D-sorbitol	-	builds acid from
65305	16443 ChEBI	D-tagatose	-	builds acid from
65305	65327 ChEBI	D-xylose	-	builds acid from
65305	65327 ChEBI	D-xylose	-	carbon source
65305	16449 ChEBI	dl-alanine	-	carbon source
65305	16991 ChEBI	dna	-	hydrolysis
65305	17113 ChEBI	erythritol	-	builds acid from
65305	4853 ChEBI	esculin	+	hydrolysis
65305		esculin ferric citrate	-	builds acid from
65305	28757 ChEBI	fructose	-	carbon source
65305	16813 ChEBI	galactitol	-	builds acid from
65305	5291 ChEBI	gelatin	-	hydrolysis
65305	28066 ChEBI	gentiobiose	-	builds acid from
65305	17754 ChEBI	glycerol	-	builds acid from
65305	17754 ChEBI	glycerol	-	carbon source
65305	28087 ChEBI	glycogen	-	builds acid from
65305	15443 ChEBI	inulin	-	builds acid from
65305	30849 ChEBI	L-arabinose	-	builds acid from
65305	18403 ChEBI	L-arabitol	-	builds acid from
65305	18287 ChEBI	L-fucose	-	builds acid from
65305	29985 ChEBI	L-glutamate	+	carbon source
65305	15971 ChEBI	L-histidine	-	carbon source
65305	15603 ChEBI	L-leucine	+	carbon source
65305	17295 ChEBI	L-phenylalanine	-	carbon source
65305	17203 ChEBI	L-proline	+	carbon source
65305	62345 ChEBI	L-rhamnose	-	builds acid from
65305	17266 ChEBI	L-sorbose	-	builds acid from
65305	16857 ChEBI	L-threonine	+	carbon source
65305	16828 ChEBI	L-tryptophan	-	carbon source
65305	16414 ChEBI	L-valine	+	carbon source
65305	65328 ChEBI	L-xylose	-	builds acid from
65305	17716 ChEBI	lactose	-	builds acid from
65305	17716 ChEBI	lactose	-	carbon source
65305	25094 ChEBI	lysine	-	carbon source
65305	17306 ChEBI	maltose	-	builds acid from
65305	17306 ChEBI	maltose	-	carbon source
65305	6731 ChEBI	melezitose	-	builds acid from
65305	28053 ChEBI	melibiose	-	builds acid from
65305	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
65305	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
65305	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
65305	17268 ChEBI	myo-inositol	-	builds acid from
65305	17268 ChEBI	myo-inositol	-	carbon source
65305	506227 ChEBI	N-acetylglucosamine	-	builds acid from
65305	17632 ChEBI	nitrate	+	reduction
65305		potassium 2-dehydro-D-gluconate	-	builds acid from
65305		potassium 5-dehydro-D-gluconate	-	builds acid from
65305	32032 ChEBI	potassium gluconate	-	builds acid from
65305	16634 ChEBI	raffinose	-	builds acid from
65305	15963 ChEBI	ribitol	-	builds acid from
65305	17814 ChEBI	salicin	-	builds acid from
65305	17822 ChEBI	serine	-	carbon source
65305	28017 ChEBI	starch	-	builds acid from
65305	28017 ChEBI	starch	-	hydrolysis
65305	17992 ChEBI	sucrose	-	builds acid from
65305	17992 ChEBI	sucrose	-	carbon source
65305	27082 ChEBI	trehalose	-	builds acid from
65305	32528 ChEBI	turanose	-	builds acid from
65305	53424 ChEBI	tween 20	+	carbon source
65305	53424 ChEBI	tween 20	+	hydrolysis
65305	53423 ChEBI	tween 40	+	carbon source
65305	53423 ChEBI	tween 40	+	hydrolysis
65305	53425 ChEBI	tween 60	+	carbon source
65305	53425 ChEBI	tween 60	+	hydrolysis
65305	53426 ChEBI	tween 80	+	carbon source
65305	53426 ChEBI	tween 80	+	hydrolysis
65305	16199 ChEBI	urea	-	hydrolysis
65305	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
65305	2637	amikacin	30 µg (disc)
65305	28971	ampicillin	10 µg (disc)
65305	3393	carbenicillin	100 µg (disc)
65305	474053	cefazolin	20 µg (disc)
65305	3493	cefoperazone	75 µg (disc)
65305	3508	ceftazidime		30 µg (disc)
65305	17698	chloramphenicol	30 µg (disc)
65305	100241	ciprofloxacin	5 µg (disc)
65305	3745	clindamycin		2 µg (disc)
65305	50845	doxycycline		30 µg (disc)
65305	48923	erythromycin	15 µg (disc)
65305	17833	gentamicin		10 µg (disc)
65305	6104	kanamycin		30 µg (disc)
65305	31845	midecamycin		30 µg (disc)
65305	7507	neomycin		30 µg (disc)
65305	100246	norfloxacin		10 µg (disc)
65305	7731	ofloxacin		5 µg (disc)
65305	7809	oxacillin		1 µg (disc)
65305	17334	penicillin	10 µg (disc)
65305	8232	piperacillin	100 µg (disc)
65305	8309	polymyxin b	300 µg (disc)
65305	27902	tetracycline		30 µg (disc)
65305	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65305	16136 ChEBI	hydrogen sulfide
65305	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65305	acid phosphatase	+	3.1.3.2
65305	alkaline phosphatase	+	3.1.3.1
65305	alpha-chymotrypsin	-	3.4.21.1
65305	alpha-fucosidase	-	3.2.1.51
65305	alpha-galactosidase	-	3.2.1.22
65305	alpha-glucosidase	-	3.2.1.20
65305	alpha-mannosidase	-	3.2.1.24
65305	beta-galactosidase	-	3.2.1.23
65305	beta-glucosidase	-	3.2.1.21
65305	beta-glucuronidase	-	3.2.1.31
65305	catalase	-	1.11.1.6
65305	cystine arylamidase	-	3.4.11.3
65305	cytochrome oxidase	+	1.9.3.1
65305	esterase (C 4)	+
65305	esterase Lipase (C 8)	+
65305	leucine arylamidase	+	3.4.11.1
65305	lipase (C 14)	-
65305	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65305	naphthol-AS-BI-phosphohydrolase	+
65305	trypsin	-	3.4.21.4
65305	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65305

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	36
C16:0	18.5
C17:1ω8c	9.5
C14:0	5.1
C16:1ω9c	4.9
C15:1ω8c	4.9
C12:0 3OH	3.9
C18:1ω7c	3.3
C11:0 3OH	2.1
C10:0 3OH	1.7
C12:0	1.7
C18:0	1.4
C17:0	1.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature	Isolation procedure
65305	surface seawater	2014-11	coastal region of the Yellow Sea, Rizhao	China	CHN	Asia	35.517	119.625 35.517/119.625	marine agar 2216	25	Seawater samples were spread on marine agar 2216 and incubated at 25°C. Strain RZG4-3-1T was purified by streaking three times on MA.
67770	Coastal seawater of the Yellow Sea		Rizhao	China	CHN	Asia
67771	From marine seawater		Seawater of Yellow sea of China	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KY014437 (>99% sequence identity) for Thalassotalea atypica subclade from Microbeatlas

Aquatic Samples	372
Soil Samples	4
Animal Samples	2
Plant Samples	2
Total Samples	380

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3029597v1 assembly for Thalassotalea atypica JCM 31894	complete	GCA_030295975	2054316.3	8046795300	2054316	93.48

16S sequences

@ref	Description	Accession	Database
65305	Thalassotalea atypica strain RZG4-3-1 16S ribosomal RNA gene, partial sequence	KY014437

GC content

@ref	GC-content (mol%)	Method
65305	40.1	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3029597v1 assembly for Thalassotalea atypica JCM 31894
NCBI: GCA_030295975

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.18	no
125439	gram_stain	BacteriaNetⓘ	negative	90.84	no
125439	motility	BacteriaNetⓘ	yes	53.56	no
125439	spore_formation	BacteriaNetⓘ	no	96.87	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae.	Yamano R, Yu J, Haditomo AHC, Jiang C, Mino S, Romalde JL, Kang K, Sakai Y, Sawabe T.	PLoS One	10.1371/journal.pone.0286693	2023
Phylogeny	Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma.	Wang Y, Liu T, Ming H, Sun P, Cao C, Guo M, Du J, Zhou C, Zhu W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002495	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65305	Yan Wang, Tingwei Liu, Hong Ming, Pengyang Sun, Chenxi Cao, Menglong Guo, Junran Du, Chenyan Zhou, Wuling Zhu: Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma. IJSEM 68: 271 - 276 2018 ( DOI 10.1099/ijsem.0.002495 , PubMed 29143725 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Thalassotalea atypica (JCM 31894, KCTC 52745, MCCC 1K03276)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_030295975

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media