Name: Thalassotalea atypica RZG4-3-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158591

Type strain:

Species: Thalassotalea atypica

Strain Designation: RZG4-3-1

Culture col. no.: JCM 31894, KCTC 52745, MCCC 1K03276

Strain history: <- Yan Wang, Xin Xiang Medical Univ.

NCBI tax ID(s): 2054316 (species)

Section

Thalassotalea atypica RZG4-3-1 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassotalea*
	Species	**Thalassotalea atypica**
	Full Scientific Name (LPSN)	Thalassotalea atypica Wang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65305]	Gram stain	negative

[Ref.: #65305]	Cell length	1.5-2.5 µm

[Ref.: #65305]	Cell width	0.5-1 µm

[Ref.: #65305]	Cell shape	rod-shaped

[Ref.: #65305]	Motility	no

[Ref.: #65305]	Colony size	1-2 mm
[Ref.: #65305]	Colony color	yellow
[Ref.: #65305]	Colony shape	circular
[Ref.: #65305]	Incubation period	2-3 days
[Ref.: #65305]	Cultivation medium used	marine agar 2216

[Ref.: #65305]	Pigment production	no
[Ref.: #65305]	Pigment name	flexirubin-type pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65305]

Culture medium

Marine agar (MA)

[Ref.: #65305]

Culture medium growth

		Temperature
[Ref.: #65305]	growth	4-30 °C
[Ref.: #65305]	optimum	24-28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65305]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65305]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65305]		NaCl		growth	1-4	%(w/v)
[Ref.: #65305]		NaCl		optimum	2	%(w/v)

[Ref.: #65305]

Observation

NaCl alone does not support growth; requires seawater or artificial seawater for growth.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65305]	4-nitrophenyl beta-D-galactopyranoside ChEBI	-	builds acid from
[Ref.: #65305]	acetate ChEBI	-	carbon source
[Ref.: #65305]	agar ChEBI	-	hydrolysis
[Ref.: #65305]	alginate ChEBI	+	carbon source
[Ref.: #65305]	alginate ChEBI	+	hydrolysis
[Ref.: #65305]	amygdalin ChEBI	+	builds acid from
[Ref.: #65305]	arbutin ChEBI	-	builds acid from
[Ref.: #65305]	casein	-	hydrolysis
[Ref.: #65305]	cellobiose ChEBI	-	builds acid from
[Ref.: #65305]	cellobiose ChEBI	-	carbon source
[Ref.: #65305]	chitin ChEBI	-	hydrolysis
[Ref.: #65305]	citrate ChEBI	-	carbon source
[Ref.: #65305]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65305]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65305]	D-fructose ChEBI	-	builds acid from
[Ref.: #65305]	D-fucose ChEBI	-	builds acid from
[Ref.: #65305]	D-galactose ChEBI	-	builds acid from
[Ref.: #65305]	D-galactose ChEBI	-	carbon source
[Ref.: #65305]	D-glucose ChEBI	-	builds acid from
[Ref.: #65305]	D-glucose ChEBI	-	carbon source
[Ref.: #65305]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65305]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65305]	D-mannose ChEBI	-	builds acid from
[Ref.: #65305]	D-mannose ChEBI	-	carbon source
[Ref.: #65305]	D-ribose ChEBI	-	builds acid from
[Ref.: #65305]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65305]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65305]	D-xylose ChEBI	-	builds acid from
[Ref.: #65305]	D-xylose ChEBI	-	carbon source
[Ref.: #65305]	dl-alanine ChEBI	-	carbon source
[Ref.: #65305]	dna ChEBI	-	hydrolysis
[Ref.: #65305]	erythritol ChEBI	-	builds acid from
[Ref.: #65305]	esculin ChEBI	+	hydrolysis
[Ref.: #65305]	esculin ferric citrate	-	builds acid from
[Ref.: #65305]	fructose ChEBI	-	carbon source
[Ref.: #65305]	galactitol ChEBI	-	builds acid from
[Ref.: #65305]	gelatin ChEBI	-	hydrolysis
[Ref.: #65305]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65305]	glycerol ChEBI	-	builds acid from
[Ref.: #65305]	glycerol ChEBI	-	carbon source
[Ref.: #65305]	glycogen ChEBI	-	builds acid from
[Ref.: #65305]	inulin ChEBI	-	builds acid from
[Ref.: #65305]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65305]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65305]	L-fucose ChEBI	-	builds acid from
[Ref.: #65305]	L-glutamate ChEBI	+	carbon source
[Ref.: #65305]	L-histidine ChEBI	-	carbon source
[Ref.: #65305]	L-leucine ChEBI	+	carbon source
[Ref.: #65305]	L-phenylalanine ChEBI	-	carbon source
[Ref.: #65305]	L-proline ChEBI	+	carbon source
[Ref.: #65305]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65305]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65305]	L-threonine ChEBI	+	carbon source
[Ref.: #65305]	L-tryptophan ChEBI	-	carbon source
[Ref.: #65305]	L-valine ChEBI	+	carbon source
[Ref.: #65305]	L-xylose ChEBI	-	builds acid from
[Ref.: #65305]	lactose ChEBI	-	builds acid from
[Ref.: #65305]	lactose ChEBI	-	carbon source
[Ref.: #65305]	lysine ChEBI	-	carbon source
[Ref.: #65305]	maltose ChEBI	-	builds acid from
[Ref.: #65305]	maltose ChEBI	-	carbon source
[Ref.: #65305]	melezitose ChEBI	-	builds acid from
[Ref.: #65305]	melibiose ChEBI	-	builds acid from
[Ref.: #65305]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65305]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65305]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65305]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65305]	myo-inositol ChEBI	-	carbon source
[Ref.: #65305]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65305]	nitrate ChEBI	+	reduction
[Ref.: #65305]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65305]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65305]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65305]	raffinose ChEBI	-	builds acid from
[Ref.: #65305]	ribitol ChEBI	-	builds acid from
[Ref.: #65305]	salicin ChEBI	-	builds acid from
[Ref.: #65305]	serine ChEBI	-	carbon source
[Ref.: #65305]	starch ChEBI	-	builds acid from
[Ref.: #65305]	starch ChEBI	-	hydrolysis
[Ref.: #65305]	sucrose ChEBI	-	builds acid from
[Ref.: #65305]	sucrose ChEBI	-	carbon source
[Ref.: #65305]	trehalose ChEBI	-	builds acid from
[Ref.: #65305]	turanose ChEBI	-	builds acid from
[Ref.: #65305]	tween 20 ChEBI	+	carbon source
[Ref.: #65305]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65305]	tween 40 ChEBI	+	carbon source
[Ref.: #65305]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65305]	tween 60 ChEBI	+	carbon source
[Ref.: #65305]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65305]	tween 80 ChEBI	+	carbon source
[Ref.: #65305]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65305]	urea ChEBI	-	hydrolysis
[Ref.: #65305]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65305]	amikacin ChEBI	yes	30	µg (disc)
[Ref.: #65305]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65305]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65305]	cefazolin ChEBI	yes	20	µg (disc)
[Ref.: #65305]	cefoperazone ChEBI	yes	75	µg (disc)
[Ref.: #65305]	ceftazidime ChEBI				yes	30	µg (disc)
[Ref.: #65305]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65305]	ciprofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #65305]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #65305]	doxycycline ChEBI				yes	30	µg (disc)
[Ref.: #65305]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65305]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #65305]	kanamycin ChEBI				yes	30	µg (disc)
[Ref.: #65305]	midecamycin ChEBI				yes	30	µg (disc)
[Ref.: #65305]	neomycin ChEBI				yes	30	µg (disc)
[Ref.: #65305]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #65305]	ofloxacin ChEBI				yes	5	µg (disc)
[Ref.: #65305]	oxacillin ChEBI				yes	1	µg (disc)
[Ref.: #65305]	penicillin ChEBI	yes	10	µg (disc)
[Ref.: #65305]	piperacillin ChEBI	yes	100	µg (disc)
[Ref.: #65305]	polymyxin b ChEBI	yes	300	µg (disc)
[Ref.: #65305]	tetracycline ChEBI				yes	30	µg (disc)
[Ref.: #65305]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65305]		hydrogen sulfide ChEBI	no
[Ref.: #65305]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65305]	acid phosphatase	+	3.1.3.2
[Ref.: #65305]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65305]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65305]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65305]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65305]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65305]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65305]	beta-galactosidase	-	3.2.1.23
[Ref.: #65305]	beta-glucosidase	-	3.2.1.21
[Ref.: #65305]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65305]	catalase	-	1.11.1.6
[Ref.: #65305]	cystine arylamidase	-	3.4.11.3
[Ref.: #65305]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65305]	esterase (C 4)	+
[Ref.: #65305]	esterase Lipase (C 8)	+
[Ref.: #65305]	leucine arylamidase	+	3.4.11.1
[Ref.: #65305]	lipase (C 14)	-
[Ref.: #65305]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65305]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65305]	trypsin	-	3.4.21.4
[Ref.: #65305]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65305]

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	36
C16:0	18.5
C17:1ω8c	9.5
C14:0	5.1
C16:1ω9c	4.9
C15:1ω8c	4.9
C12:0 3OH	3.9
C18:1ω7c	3.3
C11:0 3OH	2.1
C10:0 3OH	1.7
C12:0	1.7
C18:0	1.4
C17:0	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65305]	Sample type/isolated from	surface seawater
[Ref.: #65305]	Sampling date	2014-11
[Ref.: #65305]	Geographic location (country and/or sea, region)	coastal region of the Yellow Sea, Rizhao
[Ref.: #65305]	Country	China
[Ref.: #65305]	Country ISO 3 Code	CHN
[Ref.: #65305]	Continent	Asia
[Ref.: #65305]	Geographic location	35.5170°/119.6250°
[Ref.: #65305]	Enrichment culture	marine agar 2216
[Ref.: #65305]	Enrichment culture temperature	25 ̊C
[Ref.: #65305]	Isolation/enrichment procedure	Seawater samples were spread on marine agar 2216 and incubated at 25°C. Strain RZG4-3-1T was purified by streaking three times on MA.

[Ref.: #67770]	Sample type/isolated from	Coastal seawater of the Yellow Sea
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rizhao
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From marine seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Seawater of Yellow sea of China
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY014437 (>99% sequence identity) for Thalassotalea atypica subclade from Microbeatlas

Aquatic Samples	372
Soil Samples	4
Animal Samples	2
Plant Samples	2
Total Samples	380

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65305]	16S rRNA gene sequence	KY014437		GenBank

[Ref.: #65305]

GC-content

40.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65305]

Culture collection no.

JCM 31894, KCTC 52745, MCCC 1K03276

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma.	Wang Y, Liu T, Ming H, Sun P, Cao C, Guo M, Du J, Zhou C, Zhu W	Int J Syst Evol Microbiol	10.1099/ijsem.0.002495	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65305

Yan Wang, Tingwei Liu, Hong Ming, Pengyang Sun, Chenxi Cao, Menglong Guo, Junran Du, Chenyan Zhou, Wuling Zhu: Thalassotalea atypica sp. nov., isolated from seawater, and emended description of Thalassotalea eurytherma. IJSEM 68: 271 - 276 2018 ( DOI 10.1099/ijsem.0.002495 , PubMed 29143725 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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