Rheinheimera marina TP462 is an aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from from the surface of a black stone with brittle stars at a depth of 1103 m.
Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence| @ref 20215 |
Last LPSN update
2025-12-16 10:08:03 |
| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Chromatiales |
| Family Chromatiaceae |
| Genus Rheinheimera |
| Species Rheinheimera marina |
| Full scientific name Rheinheimera marina Wang et al. 2018 |
| 65304 | Oxygen toleranceaerobe |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 65304 | 62064 ChEBI | 2,3-butanediol | - | respiration | |
| 65304 | 64552 ChEBI | 2-hydroxybutyrate | - | respiration | |
| 65304 | 16763 ChEBI | 2-oxobutanoate | - | respiration | |
| 65304 | 30916 ChEBI | 2-oxoglutarate | - | respiration | |
| 65304 | 28644 ChEBI | 2-oxopentanoate | - | respiration | |
| 65304 | 37054 ChEBI | 3-hydroxybutyrate | + | respiration | |
| 65304 | 18240 ChEBI | 4-hydroxy-L-proline | - | respiration | |
| 65304 | 16724 ChEBI | 4-hydroxybutyrate | - | respiration | |
| 65304 | 18101 ChEBI | 4-hydroxyphenylacetic acid | - | respiration | |
| 65304 | 30089 ChEBI | acetate | + | respiration | |
| 65304 | 17128 ChEBI | adipate | - | assimilation | |
| 65304 | 2509 ChEBI | agar | - | hydrolysis | |
| 65304 | 40585 ChEBI | alpha-cyclodextrin | + | respiration | |
| 65304 | 17925 ChEBI | alpha-D-glucose | + | respiration | |
| 65304 | 36219 ChEBI | alpha-lactose | + | respiration | |
| 65304 | 27613 ChEBI | amygdalin | + | builds acid from | |
| 65304 | 18305 ChEBI | arbutin | + | builds acid from | |
| 65304 | 73706 ChEBI | bromosuccinate | + | respiration | |
| 65304 | casein | + | hydrolysis | ||
| 65304 | 17057 ChEBI | cellobiose | + | builds acid from | |
| 65304 | 17057 ChEBI | cellobiose | + | respiration | |
| 65304 | 16383 ChEBI | cis-aconitate | - | respiration | |
| 65304 | 16947 ChEBI | citrate | - | assimilation | |
| 65304 | 16947 ChEBI | citrate | - | respiration | |
| 65304 | 15570 ChEBI | D-alanine | - | respiration | |
| 65304 | 18333 ChEBI | D-arabitol | - | respiration | |
| 65304 | 15824 ChEBI | D-fructose | + | respiration | |
| 65304 | 15895 ChEBI | D-galactonic acid lactone | - | respiration | |
| 65304 | 12936 ChEBI | D-galactose | + | builds acid from | |
| 65304 | 12936 ChEBI | D-galactose | + | respiration | |
| 65304 | 18024 ChEBI | D-galacturonic acid | - | respiration | |
| 65304 | 30612 ChEBI | D-glucarate | - | respiration | |
| 65304 | 8391 ChEBI | D-gluconate | - | respiration | |
| 65304 | 17784 ChEBI | D-glucosaminic acid | - | respiration | |
| 65304 | 17634 ChEBI | D-glucose | + | assimilation | |
| 65304 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 65304 | 14314 ChEBI | D-glucose 6-phosphate | - | respiration | |
| 65304 | 15748 ChEBI | D-glucuronate | - | respiration | |
| 65304 | 16899 ChEBI | D-mannitol | - | assimilation | |
| 65304 | 16899 ChEBI | D-mannitol | - | respiration | |
| 65304 | 16024 ChEBI | D-mannose | + | builds acid from | |
| 65304 | 16024 ChEBI | D-mannose | + | respiration | |
| 65304 | 27605 ChEBI | D-psicose | - | respiration | |
| 65304 | 16523 ChEBI | D-serine | - | respiration | |
| 65304 | 17924 ChEBI | D-sorbitol | - | respiration | |
| 65304 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 65304 | 27689 ChEBI | decanoate | - | assimilation | |
| 65304 | 23652 ChEBI | dextrin | + | respiration | |
| 65304 | 17126 ChEBI | DL-carnitine | - | respiration | |
| 65304 | 16991 ChEBI | dna | + | hydrolysis | |
| 65304 | 17113 ChEBI | erythritol | - | respiration | |
| 65304 | 4853 ChEBI | esculin | + | hydrolysis | |
| 65304 | 16000 ChEBI | ethanolamine | - | respiration | |
| 65304 | 15740 ChEBI | formate | - | respiration | |
| 65304 | 16865 ChEBI | gamma-aminobutyric acid | - | respiration | |
| 65304 | 5291 ChEBI | gelatin | + | hydrolysis | |
| 65304 | 28066 ChEBI | gentiobiose | + | builds acid from | |
| 65304 | 28066 ChEBI | gentiobiose | + | respiration | |
| 65304 | 17234 ChEBI | glucose | - | fermentation | |
| 65304 | 29042 ChEBI | glucose 1-phosphate | - | respiration | |
| 65304 | 32323 ChEBI | glucuronamide | - | respiration | |
| 65304 | 17754 ChEBI | glycerol | - | respiration | |
| 65304 | 14336 ChEBI | glycerol 1-phosphate | - | respiration | |
| 65304 | 28087 ChEBI | glycogen | - | respiration | |
| 65304 | 73804 ChEBI | glycyl L-aspartic acid | + | respiration | |
| 65304 | 73784 ChEBI | glycyl-l-glutamate | + | respiration | |
| 65304 | 17596 ChEBI | inosine | - | respiration | |
| 65304 | 17240 ChEBI | itaconate | - | respiration | |
| 65304 | 21217 ChEBI | L-alaninamide | - | respiration | |
| 65304 | 16977 ChEBI | L-alanine | - | respiration | |
| 65304 | 73786 ChEBI | L-alanylglycine | - | respiration | |
| 65304 | 30849 ChEBI | L-arabinose | + | assimilation | |
| 65304 | 30849 ChEBI | L-arabinose | + | builds acid from | |
| 65304 | 30849 ChEBI | L-arabinose | + | respiration | |
| 65304 | 17196 ChEBI | L-asparagine | - | respiration | |
| 65304 | 29991 ChEBI | L-aspartate | - | respiration | |
| 65304 | 18287 ChEBI | L-fucose | - | respiration | |
| 65304 | 29985 ChEBI | L-glutamate | - | respiration | |
| 65304 | 15971 ChEBI | L-histidine | - | respiration | |
| 65304 | 15603 ChEBI | L-leucine | + | respiration | |
| 65304 | 15729 ChEBI | L-ornithine | - | respiration | |
| 65304 | 17295 ChEBI | L-phenylalanine | - | respiration | |
| 65304 | 17203 ChEBI | L-proline | + | respiration | |
| 65304 | 18183 ChEBI | L-pyroglutamic acid | - | respiration | |
| 65304 | 62345 ChEBI | L-rhamnose | - | respiration | |
| 65304 | 17115 ChEBI | L-serine | + | respiration | |
| 65304 | 16857 ChEBI | L-threonine | + | respiration | |
| 65304 | 24996 ChEBI | lactate | - | respiration | |
| 65304 | 6359 ChEBI | lactulose | - | respiration | |
| 65304 | 25115 ChEBI | malate | + | assimilation | |
| 65304 | 15792 ChEBI | malonate | - | respiration | |
| 65304 | 17306 ChEBI | maltose | + | assimilation | |
| 65304 | 17306 ChEBI | maltose | + | builds acid from | |
| 65304 | 17306 ChEBI | maltose | + | respiration | |
| 65304 | 28053 ChEBI | melibiose | + | respiration | |
| 65304 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | |
| 65304 | 43943 ChEBI | methyl alpha-D-mannoside | + | builds acid from | |
| 65304 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | respiration | |
| 65304 | 51850 ChEBI | methyl pyruvate | - | respiration | |
| 65304 | 75146 ChEBI | monomethyl succinate | + | respiration | |
| 65304 | 17268 ChEBI | myo-inositol | - | respiration | |
| 65304 | 28037 ChEBI | N-acetylgalactosamine | - | respiration | |
| 65304 | 506227 ChEBI | N-acetylglucosamine | + | assimilation | |
| 65304 | 506227 ChEBI | N-acetylglucosamine | + | builds acid from | |
| 65304 | 506227 ChEBI | N-acetylglucosamine | + | respiration | |
| 65304 | 17632 ChEBI | nitrate | - | reduction | |
| 65304 | 18401 ChEBI | phenylacetate | - | assimilation | |
| 65304 | 50048 ChEBI | phenylethylamine | - | respiration | |
| 65304 | 32032 ChEBI | potassium gluconate | - | assimilation | |
| 65304 | 17272 ChEBI | propionate | + | respiration | |
| 65304 | 17148 ChEBI | putrescine | - | respiration | |
| 65304 | 26490 ChEBI | quinate | - | respiration | |
| 65304 | 16634 ChEBI | raffinose | + | builds acid from | |
| 65304 | 16634 ChEBI | raffinose | + | respiration | |
| 65304 | 15963 ChEBI | ribitol | - | respiration | |
| 65304 | 17814 ChEBI | salicin | + | builds acid from | |
| 65304 | 41865 ChEBI | sebacic acid | - | respiration | |
| 65304 | 53258 ChEBI | sodium citrate | - | assimilation | |
| 65304 | 28017 ChEBI | starch | + | builds acid from | |
| 65304 | 28017 ChEBI | starch | + | hydrolysis | |
| 65304 | 143136 ChEBI | succinamate | - | respiration | |
| 65304 | 30031 ChEBI | succinate | + | respiration | |
| 65304 | 17992 ChEBI | sucrose | + | builds acid from | |
| 65304 | 17992 ChEBI | sucrose | + | respiration | |
| 65304 | 17748 ChEBI | thymidine | - | respiration | |
| 65304 | 27082 ChEBI | trehalose | + | builds acid from | |
| 65304 | 27082 ChEBI | trehalose | + | respiration | |
| 65304 | 32528 ChEBI | turanose | - | respiration | |
| 65304 | 53423 ChEBI | tween 40 | + | respiration | |
| 65304 | 53425 ChEBI | tween 60 | + | hydrolysis | |
| 65304 | 53426 ChEBI | tween 80 | + | respiration | |
| 65304 | 16199 ChEBI | urea | - | hydrolysis | |
| 65304 | 16704 ChEBI | uridine | - | respiration | |
| 65304 | 27248 ChEBI | urocanic acid | - | respiration | |
| 65304 | 17151 ChEBI | xylitol | - | respiration |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 65304 | acid phosphatase | + | 3.1.3.2 | |
| 65304 | alkaline phosphatase | + | 3.1.3.1 | |
| 65304 | alpha-chymotrypsin | - | 3.4.21.1 | |
| 65304 | alpha-fucosidase | - | 3.2.1.51 | |
| 65304 | alpha-galactosidase | - | 3.2.1.22 | |
| 65304 | alpha-glucosidase | + | 3.2.1.20 | |
| 65304 | alpha-mannosidase | + | 3.2.1.24 | |
| 65304 | arginine dihydrolase | - | 3.5.3.6 | |
| 65304 | beta-galactosidase | - | 3.2.1.23 | |
| 65304 | beta-glucosidase | - | 3.2.1.21 | |
| 65304 | catalase | + | 1.11.1.6 | |
| 65304 | cystine arylamidase | - | 3.4.11.3 | |
| 65304 | cytochrome oxidase | + | 1.9.3.1 | |
| 65304 | esterase (C 4) | + | ||
| 65304 | esterase Lipase (C 8) | + | ||
| 65304 | leucine arylamidase | + | 3.4.11.1 | |
| 65304 | lipase (C 14) | - | ||
| 65304 | naphthol-AS-BI-phosphohydrolase | + | ||
| 65304 | trypsin | + | 3.4.21.4 | |
| 65304 | valine arylamidase | + |
Metadata FA analysis  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 65304 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Invertebrates (Other) | #Echinodermata | |
| #Environmental | #Aquatic | #Geologic | |
| #Environmental | #Aquatic | #Marine |
| @ref | Sample type | Sampling date | Geographic location | Country | Latitude | Longitude | Enrichment culture | Enrichment culture duration | Enrichment culture temperature | Isolation procedure | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 65304 | from the surface of a black stone with brittle stars at a depth of 1103 m | 2014-12 | seamount (tentatively named the Yap-3 seamount) near the Yap Trench in the tropical western Pacific | Pacific Ocean | 8.75 | 137.683 | marine agar 2216 | 2 weeks | 20 | The sample was washed with sterile saline solution (0.8 %) immediately, and appropriate dilutions were then plated on marine agar 2216 at 20°C for 2 weeks. |
Global distribution of 16S sequence KT900247 (>99% sequence identity) for Pararheinheimera from Microbeatlas 
 Aquatic Samples |
61 |
 Soil Samples |
2 |
 Animal Samples |
39 |
 Plant Samples |
1 |
| Total Samples | 103 |
| @ref | Description | Assembly level | INSDC accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 124043 | ASM4265434v1 assembly for Rheinheimera marina CGMCC 1.15399 | scaffold | GCA_042654345   | 1774958 | 63.76 |  |
| @ref | Description | Accession | Database | |
|---|---|---|---|---|
| 65304 | Rheinheimera marina strain TP462 16S ribosomal RNA gene, partial sequence | KT900247 | |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 65304 | 48.7 | thermal denaturation, midpoint method (Tm) |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Rheinheimera marina sp. nov., isolated from a deep-sea seamount. | Wang Q, Sun YW, Liu J, Zhang DC | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002496 | 2017 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive158590.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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