Name: Aestuariicoccus marinus NAP41
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158589

Type strain:

Species: Aestuariicoccus marinus

Strain Designation: NAP41

Culture col. no.: KACC 18431, JCM 30739

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; NAP41.

NCBI tax ID(s): 1614698 (species)

Special Collections

Section

Aestuariicoccus marinus NAP41 is an aerobe, Gram-negative, coccus-shaped bacterium that was isolated from tidal flat sediment sample.

coccus-shaped
Gram-negative
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Aestuariicoccus*
	Species	**Aestuariicoccus marinus**
	Full Scientific Name (LPSN)	Aestuariicoccus marinus Feng et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65303]	Gram stain	negative

[Ref.: #65303]	Cell length	0.9-1.3 µm

[Ref.: #65303]	Cell shape	coccus-shaped

[Ref.: #65303]	Motility	no

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #65303]	growth	15-40 °C
[Ref.: #65303]	optimum	37 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65303]			optimum	7-7.5
[Ref.: #65303]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65303]		NaCl		growth	0.5-12	%(w/v)
[Ref.: #65303]		NaCl		optimum	2	%(w/v)

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Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65303]	2-oxoglutarate ChEBI	+	respiration
[Ref.: #65303]	3-hydroxybutyrate ChEBI	+	respiration
[Ref.: #65303]	adipate ChEBI	-	assimilation
[Ref.: #65303]	alpha-cyclodextrin ChEBI	+	respiration
[Ref.: #65303]	casein	-	hydrolysis
[Ref.: #65303]	cellobiose ChEBI	+	respiration
[Ref.: #65303]	cis-aconitate ChEBI	+	respiration
[Ref.: #65303]	D-arabitol ChEBI	+	respiration
[Ref.: #65303]	D-fructose ChEBI	+	respiration
[Ref.: #65303]	D-galactonic acid lactone ChEBI	+	respiration
[Ref.: #65303]	D-glucose ChEBI	+	assimilation
[Ref.: #65303]	D-mannitol ChEBI	+	assimilation
[Ref.: #65303]	D-mannitol ChEBI	+	respiration
[Ref.: #65303]	D-mannose ChEBI	+	assimilation
[Ref.: #65303]	D-mannose ChEBI	+	respiration
[Ref.: #65303]	D-psicose ChEBI	+	respiration
[Ref.: #65303]	D-sorbitol ChEBI	+	respiration
[Ref.: #65303]	decanoate ChEBI	-	assimilation
[Ref.: #65303]	dextrin ChEBI	+	respiration
[Ref.: #65303]	esculin ChEBI	+	hydrolysis
[Ref.: #65303]	gentiobiose ChEBI	+	respiration
[Ref.: #65303]	L-alanine ChEBI	+	respiration
[Ref.: #65303]	L-arabinose ChEBI	+	assimilation
[Ref.: #65303]	L-asparagine ChEBI	+	respiration
[Ref.: #65303]	L-ornithine ChEBI	+	respiration
[Ref.: #65303]	L-serine ChEBI	+	respiration
[Ref.: #65303]	malate ChEBI	+	assimilation
[Ref.: #65303]	maltose ChEBI	+	assimilation
[Ref.: #65303]	monomethyl succinate ChEBI	+	respiration
[Ref.: #65303]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65303]	nitrate ChEBI	+	reduction
[Ref.: #65303]	phenylacetate ChEBI	-	assimilation
[Ref.: #65303]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65303]	sodium citrate ChEBI	-	assimilation
[Ref.: #65303]	starch ChEBI	-	hydrolysis
[Ref.: #65303]	succinamate ChEBI	+	respiration
[Ref.: #65303]	succinate ChEBI	+	respiration
[Ref.: #65303]	sucrose ChEBI	+	respiration
[Ref.: #65303]	thymidine ChEBI	+	respiration
[Ref.: #65303]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65303]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65303]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65303]	acid phosphatase	+	3.1.3.2
[Ref.: #65303]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65303]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65303]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65303]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65303]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65303]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65303]	beta-galactosidase	-	3.2.1.23
[Ref.: #65303]	beta-glucosidase	-	3.2.1.21
[Ref.: #65303]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65303]	catalase	+	1.11.1.6
[Ref.: #65303]	cystine arylamidase	-	3.4.11.3
[Ref.: #65303]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65303]	esterase (C 4)	+
[Ref.: #65303]	esterase Lipase (C 8)	+
[Ref.: #65303]	leucine arylamidase	+	3.4.11.1
[Ref.: #65303]	lipase (C 14)	-
[Ref.: #65303]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65303]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65303]	trypsin	-	3.4.21.4
[Ref.: #65303]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65303]

Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	78.6
C18:0	8.2
C16:0	3.8
C18:1ω7c 11-methyl	3.7
C12:1 3OH	1.6
C14:0 anteiso	1.1
C15:0 anteiso	0.7
C17:0	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65303]	Sample type/isolated from	tidal flat sediment sample
[Ref.: #65303]	Geographic location (country and/or sea, region)	Taean coastal area
[Ref.: #65303]	Country	Republic of Korea
[Ref.: #65303]	Country ISO 3 Code	KOR
[Ref.: #65303]	Continent	Asia
[Ref.: #65303]	Geographic location	36.8141°/126.1860°
[Ref.: #65303]	Enrichment culture	marine agar 2216
[Ref.: #65303]	Enrichment culture duration	3 days
[Ref.: #65303]	Enrichment culture temperature	25 ̊C
[Ref.: #65303]	Isolation/enrichment procedure	serially diluted with artificial seawater (20 g NaCl, 2.9 g MgSO4, 4.53 g MgCl2 x 6H2O, 0.64 g KCl, 1.75 g CaCl2 x 2H2O per litre), spread onto marine agar 2216 and incubated at 25°C for 3 days under aerobic conditions.

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment sample obtained from the Taean coastal area
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

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Global distribution of 16S sequence MF113251 (>99% sequence identity) for Aestuariicoccus marinus subclade from Microbeatlas

Aquatic Samples	190
Soil Samples	9
Animal Samples	29
Plant Samples
Total Samples	228

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65303]	Aestuariicoccus marinus strain NAP41 16S ribosomal RNA gene, partial sequence	MF113251		GenBank ENA

[Ref.: #65303]	GC-content	56 mol%	real time PCR (RTD-PCR)
[Ref.: #67770]	GC-content	56 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #65303]

Culture collection no.

KACC 18431, JCM 30739

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariicoccus marinus gen. nov., sp. nov., isolated from sea-tidal flat sediment.	Feng T, Jeong SE, Kim KH, Park HY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002494	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65303

Tingye Feng, Sang Eun Jeong, Kyung Hyun Kim, Hye Yoon Park, Che Ok Jeon: Aestuariicoccus marinus gen. nov., sp. nov., isolated from sea-tidal flat sediment. IJSEM 68: 260 - 265 2018 ( DOI 10.1099/ijsem.0.002494 , PubMed 29139347 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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