Name: Corynebacterium gottingense MCC 3388
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158588

Type strain:

Species: Corynebacterium gottingense

Culture col. no.: MCC 3388, KCTC 39803, LMG 29598, PRD 07

NCBI tax ID(s): 2054421 (species)

Other strains from Corynebacterium gottingense

C. gottingense 99221/2016, DSM 103494, CIP 111599, ... (type strain)
C. gottingense 99221/2016 - low, DSM 108039
C. gottingense 99221/2016 - high, DSM 108986
C. gottingense NBT06-6, NBT06-06, DSM 105365, ...

Section

Corynebacterium gottingense MCC 3388 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from river water during the world's largest mass bathing event.

Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium gottingense**
	Full Scientific Name (LPSN)	Corynebacterium gottingense Atasayar et al. 2017

	Synonym	Corynebacterium godavarianum
	Synonym	Corynebacterium hadale

Information on morphological and physiological properties Morphology

[Ref.: #65302]	Gram stain	positive

[Ref.: #65302]	Cell length	1 µm

[Ref.: #65302]	Cell width	0.5 µm

[Ref.: #65302]	Cell shape	rod-shaped

[Ref.: #65302]	Motility	no

[Ref.: #65302]	Type of hemolysis	gamma
[Ref.: #65302]	Colony color	creamy-whitish
[Ref.: #65302]	Cultivation medium used	tryptic soy agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65302]			growth	25-40 °C
[Ref.: #65302]			optimum	37 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65302]			optimum	7
[Ref.: #65302]			growth	6-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65302]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65302]		NaCl		growth	0-11	%(w/v)
[Ref.: #65302]		NaCl		optimum	1	%(w/v)

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Observation

Strain PRD07 T is lipophilic

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65302]	amygdalin ChEBI	+	assimilation
[Ref.: #65302]	L-arabinose ChEBI	+	assimilation
[Ref.: #65302]	maltose ChEBI	+	builds acid from
[Ref.: #65302]	melibiose ChEBI	+	assimilation
[Ref.: #65302]	nitrate ChEBI	-	reduction
[Ref.: #65302]	ribose ChEBI	+	builds acid from

	Metabolite production	Metabolite	Production
[Ref.: #65302]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65302]	acid phosphatase	-	3.1.3.2
[Ref.: #65302]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65302]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65302]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65302]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65302]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65302]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65302]	beta-galactosidase	-	3.2.1.23
[Ref.: #65302]	beta-glucosidase	-	3.2.1.21
[Ref.: #65302]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65302]	catalase	+	1.11.1.6
[Ref.: #65302]	cystine arylamidase	-	3.4.11.3
[Ref.: #65302]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65302]	esterase (C 4)	-
[Ref.: #65302]	esterase Lipase (C 8)	-
[Ref.: #65302]	gelatinase	-
[Ref.: #65302]	leucine arylamidase	-	3.4.11.1
[Ref.: #65302]	lipase	-
[Ref.: #65302]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #65302]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65302]	pyrazinamidase	+	3.5.1.B15
[Ref.: #65302]	trypsin	-	3.4.21.4
[Ref.: #65302]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65302]	Sample type/isolated from	river water during the world's largest mass bathing event
[Ref.: #65302]	Sampling date	2015
[Ref.: #65302]	Geographic location (country and/or sea, region)	Kumbh Mela on the bank of Godavari river, Nashik
[Ref.: #65302]	Country	India
[Ref.: #65302]	Country ISO 3 Code	IND
[Ref.: #65302]	Continent	Asia
[Ref.: #65302]	Enrichment culture	tryptic soy agar
[Ref.: #65302]	Enrichment culture duration	3 days
[Ref.: #65302]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

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Global distribution of 16S sequence KY670596 (>99% sequence identity) for Corynebacterium gottingense from Microbeatlas

Aquatic Samples	1597
Soil Samples	844
Animal Samples	18719
Plant Samples	420
Total Samples	21580

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65302]	16S rRNA gene sequence	KY670596		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium godavarianum LMG 29598	GCA_007559235	contig	GenBank	2054421 tax ID	*
[Ref.: #66792]	Corynebacterium godavarianum strain LMG 29598	2054421.3	wgs	PATRIC	2054421 tax ID	*

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GC-content

68.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium godavarianum strain LMG 29598 PATRIC: 2054421.3
[Ref.: #69480]	motile	no	93.122	yes
[Ref.: #69480]	gram-positive	yes	93.459	yes
[Ref.: #69480]	anaerobic	no	99.225	yes
[Ref.: #69480]	aerobic	yes	51.708	yes
[Ref.: #69480]	halophile	yes	64.997	yes
[Ref.: #69480]	spore-forming	no	93.953	no
[Ref.: #69480]	glucose-util	yes	80.882	no
[Ref.: #69480]	flagellated	no	96.625	yes
[Ref.: #69480]	thermophile	no	96.967	no
[Ref.: #69480]	glucose-ferment	yes	52.967	no

Availability in culture collections External links

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Culture collection no.

MCC 3388, KCTC 39803, LMG 29598, PRD 07

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India.	Jani K, Khare K, Senik S, Karodi P, Vemuluri VR, Bandal J, Shouche Y, Rale V, Sharma A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002491	2017	*
Phylogeny	Corynebacterium godavarianum Jani et al. 2018 and Corynebacterium hadale Wei et al. 2018 are both later heterotypic synonyms of Corynebacterium gottingense Atasayar et al. 2017, proposal of an emended description of Corynebacterium gottingense Atasayar et al. 2017.	Bernard KA, Pacheco AL, Burdz T, Wiebe D, Bernier AM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004153	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65302

Kunal Jani, Kaustubh Khare, Svetlana Senik, Prachi Karodi, Venkata Ramana Vemuluri, Jayashree Bandal, Yogesh Shouche, Vinay Rale, Avinash Sharma: Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India. IJSEM 68: 241 - 247 2018 ( DOI 10.1099/ijsem.0.002491 , PubMed 29148360 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Corynebacterium godavarianum strain LMG 29598

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