Corynebacterium gottingense (MCC 3388, KCTC 39803, LMG 29598)

Name: Corynebacterium gottingense (MCC 3388, KCTC 39803, LMG 29598)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158588

Type strain

Culture col. no. MCC 3388 KCTC 39803 LMG 29598 PRD 07

NCBI tax ID(s) 2054421

Special Collections KCTC Literature strains

Links

Corynebacterium gottingense MCC 3388 is an aerobe, Gram-positive, rod-shaped prokaryote that was isolated from river water during the world's largest mass bathing event.

Gram-positive rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286384

KCTC 39803

@ref 20215

Last LPSN update 2026-02-09 11:38:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium gottingense

Full scientific name Corynebacterium gottingense Atasayar et al. 2017

Synonyms (2)

Corynebacterium godavarianum
Corynebacterium hadale

BacDive ID	Other strains from **Corynebacterium gottingense** (4)	Type strain
139735	C. gottingense 99221/2016, DSM 103494, CIP 111599, JCM 31931 (type strain)
158231	C. gottingense 99221/2016 - low, DSM 108039
158232	C. gottingense 99221/2016 - high, DSM 108986
158398	C. gottingense NBT06-6, NBT06-06, DSM 105365, MCCC 1K03347, ...

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
65302	positive	1 µm	0.5 µm	rod-shaped
125438						94.5

Colony morphology

@ref	Type of hemolysis	Colony color	Medium used
65302	gamma	creamy-whitish	tryptic soy agar

Culture and growth conditions

Culture medium

@ref	Name	Growth
65302	tryptic soy agar
65302	Reasoner's 2A agar (R2A)
65302	LB (Luria-Bertani) MEDIUM
65302	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65302	positive	growth	25-40
65302	positive	optimum	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65302	positive	optimum	7
65302	positive	growth	6-11	alkaliphile

Physiology and metabolism

Oxygen tolerance

65302

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		91.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65302	NaCl	positive	growth	0-11 %(w/v)
65302	NaCl	positive	optimum	1 %(w/v)

Observation

65302

ObservationStrain PRD07 T is lipophilic

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65302	27613 ChEBI	amygdalin	+	assimilation
65302	30849 ChEBI	L-arabinose	+	assimilation
65302	17306 ChEBI	maltose	+	builds acid from
65302	28053 ChEBI	melibiose	+	assimilation
65302	17632 ChEBI	nitrate	-	reduction
65302	33942 ChEBI	ribose	+	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65302	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
65302	acid phosphatase	-	3.1.3.2
65302	alkaline phosphatase	+	3.1.3.1
65302	alpha-chymotrypsin	-	3.4.21.1
65302	alpha-fucosidase	-	3.2.1.51
65302	alpha-galactosidase	-	3.2.1.22
65302	alpha-glucosidase	+	3.2.1.20
65302	alpha-mannosidase	-	3.2.1.24
65302	beta-galactosidase	-	3.2.1.23
65302	beta-glucosidase	-	3.2.1.21
65302	beta-glucuronidase	-	3.2.1.31
65302	catalase	+	1.11.1.6
65302	cystine arylamidase	-	3.4.11.3
65302	cytochrome oxidase	-	1.9.3.1
65302	esterase (C 4)	-
65302	esterase Lipase (C 8)	-
65302	gelatinase	-
65302	leucine arylamidase	-	3.4.11.1
65302	lipase	-
65302	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65302	naphthol-AS-BI-phosphohydrolase	-
65302	pyrazinamidase	+	3.5.1.B15
65302	trypsin	-	3.4.21.4
65302	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
65302	river water during the world's largest mass bathing event	2015	Kumbh Mela on the bank of Godavari river, Nashik	India	IND	Asia	tryptic soy agar	3 days	37

Taxonmaps

69479

Global distribution of 16S sequence KY670596 (>99% sequence identity) for Corynebacterium gottingense from Microbeatlas

Aquatic Samples	1597
Soil Samples	844
Animal Samples	18719
Plant Samples	420
Total Samples	21580

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM755923v1 assembly for Corynebacterium godavarianum LMG 29598	contig	GCA_007559235	2054421.3	2996606166	2054421	74.63

16S sequences

@ref	Description	Accession	Database
65302	Corynebacterium godavarianum strain PRD07 16S ribosomal RNA gene, partial sequence	KY670596

GC content

@ref	GC-content (mol%)	Method
65302	68.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium godavarianum LMG 29598
NCBI: GCA_007559235

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.50	no
125439	motility	BacteriaNetⓘ	no	65.70	no
125439	gram_stain	BacteriaNetⓘ	positive	83.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	87.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium godavarianum strain LMG 29598
PATRIC: 2054421.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.39	no
125438	anaerobic	anaerobicⓘ	no	92.46	yes
125438	spore-forming	spore-formingⓘ	no	84.08	no
125438	aerobic	aerobicⓘ	yes	51.71	no
125438	thermophilic	thermophileⓘ	no	97.50	no
125438	flagellated	motile2+ⓘ	no	94.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Corynebacterium godavarianum Jani et al. 2018 and Corynebacterium hadale Wei et al. 2018 are both later heterotypic synonyms of Corynebacterium gottingense Atasayar et al. 2017, proposal of an emended description of Corynebacterium gottingense Atasayar et al. 2017.	Bernard KA, Pacheco AL, Burdz T, Wiebe D, Bernier AM	Int J Syst Evol Microbiol	10.1099/ijsem.0.004153	2020
Phylogeny	Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India.	Jani K, Khare K, Senik S, Karodi P, Vemuluri VR, Bandal J, Shouche Y, Rale V, Sharma A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002491	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65302	Kunal Jani, Kaustubh Khare, Svetlana Senik, Prachi Karodi, Venkata Ramana Vemuluri, Jayashree Bandal, Yogesh Shouche, Vinay Rale, Avinash Sharma: Corynebacterium godavarianum sp. nov., isolated from the Godavari river, India. IJSEM 68: 241 - 247 2018 ( DOI 10.1099/ijsem.0.002491 , PubMed 29148360 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium gottingense (MCC 3388, KCTC 39803, LMG 29598)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007559235

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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