Microbacterium deserti (CPCC 204619, KCTC 39991, SYSU D8014)

Name: Microbacterium deserti (CPCC 204619, KCTC 39991, SYSU D8014)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158586

Type strain

Culture col. no. CPCC 204619 KCTC 39991 SYSU D8014

NCBI tax ID(s) 2053190

Special Collections KCTC Literature strains

Links

Microbacterium deserti CPCC 204619 is an aerobe, Gram-positive, rod-shaped prokaryote that forms circular colonies and was isolated from desert soil sample.

Gram-positive rod-shaped colony-forming aerobe 16S sequence

Name and taxonomic classification

SI-ID 25163

KCTC39991

@ref 20215

Last LPSN update 2025-12-16 10:08:03

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Microbacterium

Species Microbacterium deserti

Full scientific name Microbacterium deserti Yang et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
65299	positive	0.9-1.1 µm	0.4-0.5 µm	rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
65299	lemon yellos	circular	5 days	R2A

Culture and growth conditions

Culture medium

@ref	Name	Growth
65299	Reasoner's 2A agar (R2A)

Culture temp

@ref	Growth	Type	Temperature (°C)
65299	positive	growth	4-45
65299	positive	optimum	28
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH
65299	positive	optimum	7
65299	positive	growth	5-10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
65299	aerobe
67771	aerobe

Spore formation

65299

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65299	NaCl	positive	growth	0-8 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65299	16651 ChEBI	(S)-lactate	+	assimilation
65299	30916 ChEBI	2-oxoglutarate	+	assimilation
65299	18101 ChEBI	4-hydroxyphenylacetic acid	+	assimilation
65299	30089 ChEBI	acetate	+	assimilation
65299	17128 ChEBI	adipate	-	assimilation
65299	17925 ChEBI	alpha-D-glucose	+	assimilation
65299	17057 ChEBI	cellobiose	+	assimilation
65299	62968 ChEBI	cellulose	-	hydrolysis
65299	15824 ChEBI	D-fructose	+	assimilation
65299	15748 ChEBI	D-glucuronate	+	assimilation
65299	15588 ChEBI	D-malate	+	assimilation
65299	16899 ChEBI	D-mannitol	+	assimilation
65299	16024 ChEBI	D-mannose	+	assimilation
65299	17924 ChEBI	D-sorbitol	+	assimilation
65299	27689 ChEBI	decanoate	-	assimilation
65299	23652 ChEBI	dextrin	+	assimilation
65299	4853 ChEBI	esculin	+	hydrolysis
65299	5291 ChEBI	gelatin	+	hydrolysis
65299	28066 ChEBI	gentiobiose	+	assimilation
65299	24265 ChEBI	gluconate	+	assimilation
65299	17234 ChEBI	glucose	+	assimilation
65299	17596 ChEBI	inosine	+	assimilation
65299	18287 ChEBI	L-fucose	+	assimilation
65299	15589 ChEBI	L-malate	+	assimilation
65299	62345 ChEBI	L-rhamnose	+	assimilation
65299	25115 ChEBI	malate	+	assimilation
65299	17306 ChEBI	maltose	-	assimilation
65299	29864 ChEBI	mannitol	+	assimilation
65299	37684 ChEBI	mannose	+	assimilation
65299	63153 ChEBI	N-acetyl-D-mannosamine	+	assimilation
65299	506227 ChEBI	N-acetylglucosamine	+	assimilation
65299	17632 ChEBI	nitrate	+	reduction
65299	17272 ChEBI	propionate	+	assimilation
65299	17814 ChEBI	salicin	+	assimilation
65299	53258 ChEBI	sodium citrate	-	assimilation
65299	28017 ChEBI	starch	-	hydrolysis
65299	27082 ChEBI	trehalose	+	assimilation
65299	32528 ChEBI	turanose	+	assimilation
65299	53424 ChEBI	tween 20	-	hydrolysis
65299	53423 ChEBI	tween 40	+	assimilation
65299	53423 ChEBI	tween 40	+	hydrolysis
65299	53425 ChEBI	tween 60	+	hydrolysis
65299	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65299	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65299	acid phosphatase	+	3.1.3.2
65299	alkaline phosphatase	-	3.1.3.1
65299	alpha-chymotrypsin	-	3.4.21.1
65299	alpha-galactosidase	-	3.2.1.22
65299	alpha-glucosidase	+	3.2.1.20
65299	alpha-mannosidase	-	3.2.1.24
65299	arginine dihydrolase	-	3.5.3.6
65299	beta-D-fucosidase	-	3.2.1.38
65299	beta-galactosidase	-	3.2.1.23
65299	beta-glucosidase	-	3.2.1.21
65299	beta-glucuronidase	-	3.2.1.31
65299	catalase	+	1.11.1.6
65299	cystine arylamidase	-	3.4.11.3
65299	cytochrome oxidase	+	1.9.3.1
65299	esterase (C 4)	+
65299	esterase Lipase (C 8)	+
65299	leucine arylamidase	+	3.4.11.1
65299	lipase (C 14)	+
65299	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65299	naphthol-AS-BI-phosphohydrolase	+
65299	trypsin	-	3.4.21.4
65299	urease	-	3.5.1.5
65299	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65299

Fatty acid	Percentage
C15:0 anteiso	49.5
C17:0 anteiso	38.8
C16:0 iso	7.6
C16:0	1
C15:0 iso	0.7
C17:0 iso	0.6
C16:0 10-methyl and/or iso-C17:1 ω9c	0.5
C14:0 iso	0.3
C17:0	0.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
65299	desert soil sample	arid desert in the Al-Jouf region	Saudi Arabia	SAU	Asia	R2A	pH 7	5 days	28
67771	From desert	Riyadh	Saudi Arabia	SAU	Asia

Taxonmaps

69479

Global distribution of 16S sequence MF399040 (>99% sequence identity) for Microbacterium lacusdiani from Microbeatlas

Aquatic Samples	86
Soil Samples	25
Animal Samples	70
Plant Samples	42
Total Samples	223

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Database
65299	Microbacterium deserti strain SYSU D8014 16S ribosomal RNA gene, partial sequence	MF399040

GC content

@ref	GC-content (mol%)	Method
65299	73.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Isolation and Characterization of Levoglucosan-Metabolizing Bacteria.	Arya AS, Hang MTH, Eiteman MA.	Appl Environ Microbiol	10.1128/aem.01868-21	2022
	Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment.	Mandakovic D, Cintolesi A, Maldonado J, Mendoza SN, Aite M, Gaete A, Saitua F, Allende M, Cambiazo V, Siegel A, Maass A, Gonzalez M, Latorre M.	Sci Rep	10.1038/s41598-020-62130-8	2020
Phylogeny	Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil.	Yang ZW, Salam N, Mohany M, Chinnathambi A, Alharbi SA, Xiao M, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002485	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65299	Zi-Wen Yang, Nimaichand Salam, Mohamed Mohany, Arunachalam Chinnathambi, Sulaiman Ali Alharbi, Min Xiao, Wael N. Hozzein, Wen-Jun Li: Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil. IJSEM 68: 217 - 222 2018 ( DOI 10.1099/ijsem.0.002485 , PubMed 29125456 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Microbacterium deserti (CPCC 204619, KCTC 39991, SYSU D8014)

Name and taxonomic classification