Microbacterium deserti SYSU D8014 | Type strain | CPCC 204619, KCTC 39991

Strain identifier

BacDive ID: 158586

Type strain:

Species: Microbacterium deserti

Strain Designation: SYSU D8014

Culture col. no.: CPCC 204619, KCTC 39991

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Microbacterium deserti SYSU D8014 is an aerobe, gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from desert soil sample.

colony-forming
gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Actinobacteria
	Class	Actinobacteria
	Order	Micrococcales
	Family	Microbacteriaceae
	Genus	Microbacterium
	Species	Microbacterium deserti
	Full Scientific Name (PNU)	Microbacterium deserti Yang et al. 2018

Information on morphological and physiological propertiesMorphology

[Ref.: #65299]	Gram stain	positive
[Ref.: #65299]	Cell length	0.9-1.1 µm
[Ref.: #65299]	Cell width	0.4-0.5 µm
[Ref.: #65299]	Cell shape	rod-shaped
[Ref.: #65299]	Motility	no

[Ref.: #65299]	Colony color	lemon yellos
[Ref.: #65299]	Colony shape	circular
[Ref.: #65299]	Incubation period	5 days
[Ref.: #65299]	Cultivation medium used	R2A

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #65299]

Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65299]			growth	4-45 ̊C
[Ref.: #65299]			optimum	28 ̊C

[Ref.: #65299]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #65299]			optimum	7
[Ref.: #65299]			growth	5-10

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #65299]

Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65299]		NaCl		growth	0-8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65299]	(S)-lactate ChEBI	+	assimilation
[Ref.: #65299]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #65299]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #65299]	acetate ChEBI	+	assimilation
[Ref.: #65299]	adipate ChEBI	-	assimilation
[Ref.: #65299]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #65299]	cellobiose ChEBI	+	assimilation
[Ref.: #65299]	cellulose ChEBI	-	hydrolysis
[Ref.: #65299]	D-fructose ChEBI	+	assimilation
[Ref.: #65299]	D-glucuronate ChEBI	+	assimilation
[Ref.: #65299]	D-malate ChEBI	+	assimilation
[Ref.: #65299]	D-mannitol ChEBI	+	assimilation
[Ref.: #65299]	D-mannose ChEBI	+	assimilation
[Ref.: #65299]	D-sorbitol ChEBI	+	assimilation
[Ref.: #65299]	decanoate ChEBI	-	assimilation
[Ref.: #65299]	dextrin ChEBI	+	assimilation
[Ref.: #65299]	esculin ChEBI	+	hydrolysis
[Ref.: #65299]	gelatin ChEBI	+	hydrolysis
[Ref.: #65299]	gentiobiose ChEBI	+	assimilation
[Ref.: #65299]	gluconate ChEBI	+	assimilation
[Ref.: #65299]	glucose ChEBI	+	assimilation
[Ref.: #65299]	inosine ChEBI	+	assimilation
[Ref.: #65299]	L-fucose ChEBI	+	assimilation
[Ref.: #65299]	L-malate ChEBI	+	assimilation
[Ref.: #65299]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65299]	malate ChEBI	+	assimilation
[Ref.: #65299]	maltose ChEBI	-	assimilation
[Ref.: #65299]	mannitol ChEBI	+	assimilation
[Ref.: #65299]	mannose ChEBI	+	assimilation
[Ref.: #65299]	N-acetyl-D-mannosamine ChEBI	+	assimilation
[Ref.: #65299]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65299]	nitrate ChEBI	+	reduction
[Ref.: #65299]	propionate ChEBI	+	assimilation
[Ref.: #65299]	salicin ChEBI	+	assimilation
[Ref.: #65299]	sodium citrate ChEBI	-	assimilation
[Ref.: #65299]	starch ChEBI	-	hydrolysis
[Ref.: #65299]	trehalose ChEBI	+	assimilation
[Ref.: #65299]	turanose ChEBI	+	assimilation
[Ref.: #65299]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65299]	tween 40 ChEBI	+	assimilation
[Ref.: #65299]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65299]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65299]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65299]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65299]	acid phosphatase	+	3.1.3.2
[Ref.: #65299]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65299]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65299]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65299]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65299]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65299]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65299]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65299]	beta-galactosidase	-	3.2.1.23
[Ref.: #65299]	beta-glucosidase	-	3.2.1.21
[Ref.: #65299]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65299]	catalase	+	1.11.1.6
[Ref.: #65299]	cystine arylamidase	-	3.4.11.3
[Ref.: #65299]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65299]	esterase (C 4)	+
[Ref.: #65299]	esterase Lipase (C 8)	+
[Ref.: #65299]	leucine arylamidase	+	3.4.11.1
[Ref.: #65299]	lipase (C 14)	+
[Ref.: #65299]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65299]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65299]	trypsin	-	3.4.21.4
[Ref.: #65299]	urease	-	3.5.1.5
[Ref.: #65299]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65299]

Fatty acid	Percentage
C15:0 anteiso	49.5
C17:0 anteiso	38.8
C16:0 iso	7.6
C16:0	1
C15:0 iso	0.7
C17:0 iso	0.6
C16:0 10-methyl and/or iso-C17:1 ω9c	0.5
C14:0 iso	0.3
C17:0	0.2

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #65299]	Sample type/isolated from	desert soil sample
[Ref.: #65299]	Geographic location (country and/or sea, region)	arid desert in the Al-Jouf region
[Ref.: #65299]	Country	Saudi Arabia
[Ref.: #65299]	Country ISO 3 Code	SAU
[Ref.: #65299]	Continent	Asia
[Ref.: #65299]	Enrichment culture	R2A
[Ref.: #65299]	Enrichment culture composition	pH 7
[Ref.: #65299]	Enrichment culture duration	5 days
[Ref.: #65299]	Enrichment culture temperature	28 ̊C

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65299]	16S rRNA gene sequence	MF399040		GenBank

[Ref.: #65299]

GC-content

73.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collectionsExternal links

[Ref.: #65299]

Culture collection no.

CPCC 204619, KCTC 39991

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#65299

Zi-Wen Yang, Nimaichand Salam, Mohamed Mohany, Arunachalam Chinnathambi, Sulaiman Ali Alharbi, Min Xiao, Wael N. Hozzein, Wen-Jun Li: Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil. IJSEM 68: 217 - 222 2018 ( DOI 10.1099/ijsem.0.002485 )

* These References are textmined

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