Name: Microbacterium deserti CPCC 204619
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158586

Type strain:

Species: Microbacterium deserti

Culture col. no.: CPCC 204619, KCTC 39991, SYSU D8014

Strain history: <- Wael Nabil Hozzein, King Saud Univ.

NCBI tax ID(s): 2053190 (species)

Section

Microbacterium deserti CPCC 204619 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from desert soil sample.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium deserti**
	Full Scientific Name (LPSN)	Microbacterium deserti Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65299]	Gram stain	positive
[Ref.: #65299]	Cell length	0.9-1.1 µm
[Ref.: #65299]	Cell width	0.4-0.5 µm
[Ref.: #65299]	Cell shape	rod-shaped
[Ref.: #65299]	Motility	no

[Ref.: #65299]	Colony color	lemon yellos
[Ref.: #65299]	Colony shape	circular
[Ref.: #65299]	Incubation period	5 days
[Ref.: #65299]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65299]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65299]

Culture medium growth

		Temperature
[Ref.: #65299]	growth	4-45 °C
[Ref.: #65299]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #65299]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65299]			optimum	7
[Ref.: #65299]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65299]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65299]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65299]		NaCl		growth	0-8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65299]	(S)-lactate ChEBI	+	assimilation
[Ref.: #65299]	2-oxoglutarate ChEBI	+	assimilation
[Ref.: #65299]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #65299]	acetate ChEBI	+	assimilation
[Ref.: #65299]	adipate ChEBI	-	assimilation
[Ref.: #65299]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #65299]	cellobiose ChEBI	+	assimilation
[Ref.: #65299]	cellulose ChEBI	-	hydrolysis
[Ref.: #65299]	D-fructose ChEBI	+	assimilation
[Ref.: #65299]	D-glucuronate ChEBI	+	assimilation
[Ref.: #65299]	D-malate ChEBI	+	assimilation
[Ref.: #65299]	D-mannitol ChEBI	+	assimilation
[Ref.: #65299]	D-mannose ChEBI	+	assimilation
[Ref.: #65299]	D-sorbitol ChEBI	+	assimilation
[Ref.: #65299]	decanoate ChEBI	-	assimilation
[Ref.: #65299]	dextrin ChEBI	+	assimilation
[Ref.: #65299]	esculin ChEBI	+	hydrolysis
[Ref.: #65299]	gelatin ChEBI	+	hydrolysis
[Ref.: #65299]	gentiobiose ChEBI	+	assimilation
[Ref.: #65299]	gluconate ChEBI	+	assimilation
[Ref.: #65299]	glucose ChEBI	+	assimilation
[Ref.: #65299]	inosine ChEBI	+	assimilation
[Ref.: #65299]	L-fucose ChEBI	+	assimilation
[Ref.: #65299]	L-malate ChEBI	+	assimilation
[Ref.: #65299]	L-rhamnose ChEBI	+	assimilation
[Ref.: #65299]	malate ChEBI	+	assimilation
[Ref.: #65299]	maltose ChEBI	-	assimilation
[Ref.: #65299]	mannitol ChEBI	+	assimilation
[Ref.: #65299]	mannose ChEBI	+	assimilation
[Ref.: #65299]	N-acetyl-D-mannosamine ChEBI	+	assimilation
[Ref.: #65299]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #65299]	nitrate ChEBI	+	reduction
[Ref.: #65299]	propionate ChEBI	+	assimilation
[Ref.: #65299]	salicin ChEBI	+	assimilation
[Ref.: #65299]	sodium citrate ChEBI	-	assimilation
[Ref.: #65299]	starch ChEBI	-	hydrolysis
[Ref.: #65299]	trehalose ChEBI	+	assimilation
[Ref.: #65299]	turanose ChEBI	+	assimilation
[Ref.: #65299]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65299]	tween 40 ChEBI	+	assimilation
[Ref.: #65299]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65299]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65299]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65299]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65299]	acid phosphatase	+	3.1.3.2
[Ref.: #65299]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65299]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65299]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65299]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65299]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65299]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65299]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65299]	beta-galactosidase	-	3.2.1.23
[Ref.: #65299]	beta-glucosidase	-	3.2.1.21
[Ref.: #65299]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65299]	catalase	+	1.11.1.6
[Ref.: #65299]	cystine arylamidase	-	3.4.11.3
[Ref.: #65299]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65299]	esterase (C 4)	+
[Ref.: #65299]	esterase Lipase (C 8)	+
[Ref.: #65299]	leucine arylamidase	+	3.4.11.1
[Ref.: #65299]	lipase (C 14)	+
[Ref.: #65299]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65299]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65299]	trypsin	-	3.4.21.4
[Ref.: #65299]	urease	-	3.5.1.5
[Ref.: #65299]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65299]

Fatty acid	Percentage
C15:0 anteiso	49.5
C17:0 anteiso	38.8
C16:0 iso	7.6
C16:0	1
C15:0 iso	0.7
C17:0 iso	0.6
C16:0 10-methyl and/or iso-C17:1 ω9c	0.5
C14:0 iso	0.3
C17:0	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65299]	Sample type/isolated from	desert soil sample
[Ref.: #65299]	Geographic location (country and/or sea, region)	arid desert in the Al-Jouf region
[Ref.: #65299]	Country	Saudi Arabia
[Ref.: #65299]	Country ISO 3 Code	SAU
[Ref.: #65299]	Continent	Asia
[Ref.: #65299]	Enrichment culture	R2A
[Ref.: #65299]	Enrichment culture composition	pH 7
[Ref.: #65299]	Enrichment culture duration	5 days
[Ref.: #65299]	Enrichment culture temperature	28 ̊C

[Ref.: #67771]	Sample type/isolated from	From desert
[Ref.: #67771]	Geographic location (country and/or sea, region)	Riyadh
[Ref.: #67771]	Country	Saudi Arabia
[Ref.: #67771]	Country ISO 3 Code	SAU
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF399040 (>99% sequence identity) for Microbacterium lacusdiani from Microbeatlas

Aquatic Samples	86
Soil Samples	25
Animal Samples	70
Plant Samples	42
Total Samples	223

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65299]	16S rRNA gene sequence	MF399040		GenBank

[Ref.: #65299]

GC-content

73.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65299]

Culture collection no.

CPCC 204619, KCTC 39991, SYSU D8014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil.	Yang ZW, Salam N, Mohany M, Chinnathambi A, Alharbi SA, Xiao M, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002485	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65299

Zi-Wen Yang, Nimaichand Salam, Mohamed Mohany, Arunachalam Chinnathambi, Sulaiman Ali Alharbi, Min Xiao, Wael N. Hozzein, Wen-Jun Li: Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil. IJSEM 68: 217 - 222 2018 ( DOI 10.1099/ijsem.0.002485 , PubMed 29125456 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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