Name: Deinococcus taklimakanensis X-121
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158571

Type strain:

Species: Deinococcus taklimakanensis

Strain Designation: X-121

Culture col. no.: CCTCC AB 207228, KCTC 33842

Strain history: <- Zuobing Liu, Wuhan Univ.

NCBI tax ID(s): 536443 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Deinococcus taklimakanensis X-121 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus taklimakanensis**
	Full Scientific Name (LPSN)	Deinococcus taklimakanensis Liu et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65272]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #65272]	Cell length	1.6 µm

[Ref.: #65272]	Cell width	1.2 µm

[Ref.: #65272]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #65272]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #65272]	Colony size	1 mm
[Ref.: #65272]	Colony color	faintly pink
[Ref.: #65272]	Colony shape	circular
[Ref.: #65272]	Incubation period	2 days
[Ref.: #65272]	Cultivation medium used	TGY

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65272]

Culture medium

TGY

[Ref.: #65272]

Culture medium growth

[Ref.: #65272]

Culture medium composition

expand / minimize

[Ref.: #65272]

Culture medium

tryptic soy broth

[Ref.: #65272]

Culture medium growth

		Temperature
[Ref.: #65272]	growth	10-37 °C
[Ref.: #65272]	optimum	28-30 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65272]			optimum	7.5
[Ref.: #65272]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65272]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65272]		NaCl		growth	0-1	%
[Ref.: #65272]		NaCl		optimum	0.5	%

[Ref.: #65272]	Observation	Strain X-121 T showed good resistance to UV and gamma radiation.
[Ref.: #67771]	Observation	quinones: MK-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65272]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #65272]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #65272]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #65272]	4-hydroxyphenylacetic acid ChEBI	+	carbon source
[Ref.: #65272]	beta-phenylethylamine ChEBI	+	carbon source
[Ref.: #65272]	casein	+	hydrolysis
[Ref.: #65272]	D-glucuronate ChEBI	+	carbon source
[Ref.: #65272]	dextrin ChEBI	+	carbon source
[Ref.: #65272]	glucuronamide ChEBI	+	carbon source
[Ref.: #65272]	L-arabinose ChEBI	+	carbon source
[Ref.: #65272]	L-fucose ChEBI	+	carbon source
[Ref.: #65272]	lactose ChEBI	+	carbon source
[Ref.: #65272]	maltose ChEBI	+	carbon source
[Ref.: #65272]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #65272]	N-acetylgalactosamine ChEBI	+	carbon source
[Ref.: #65272]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65272]	nitrate ChEBI	-	reduction
[Ref.: #65272]	putrescine ChEBI	+	carbon source
[Ref.: #65272]	quinate ChEBI	+	carbon source
[Ref.: #65272]	starch ChEBI	+	hydrolysis
[Ref.: #65272]	trehalose ChEBI	+	carbon source
[Ref.: #65272]	tween 40 ChEBI	+	carbon source
[Ref.: #65272]	urocanic acid ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65272]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65272]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65272]	catalase	+	1.11.1.6
[Ref.: #65272]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65272]	esterase	+
[Ref.: #65272]	esterase Lipase (C 8)	+
[Ref.: #65272]	gelatinase	+
[Ref.: #65272]	leucine arylamidase	+	3.4.11.1
[Ref.: #65272]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65272]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65272]	Sample type/isolated from	soil sample
[Ref.: #65272]	Geographic location (country and/or sea, region)	Taklimakan desert, Xinjiang
[Ref.: #65272]	Country	China
[Ref.: #65272]	Country ISO 3 Code	CHN
[Ref.: #65272]	Continent	Asia
[Ref.: #65272]	Enrichment culture	tryptic soy broth
[Ref.: #65272]	Enrichment culture duration	1 week
[Ref.: #65272]	Enrichment culture temperature	28 ̊C
[Ref.: #65272]	Isolation/enrichment procedure	The soil sample was suspended in sterile water and homogenized for 5 min in a sterile mortar. The resulting supernatant was serially diluted and spread on 10-fold-diluted trypticase soy broth agar plates. Plateswere incubated at 28°C for 7 days.

[Ref.: #67771]	Sample type/isolated from	From soil of the Taklimakan desert
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX494399 (>99% sequence identity) for Deinococcus taklimakanensis subclade from Microbeatlas

Aquatic Samples	1024
Soil Samples	432
Animal Samples	4942
Plant Samples	213
Total Samples	6611

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65272]	Deinococcus taklimakanensis strain X-121 16S ribosomal RNA gene, partial sequence	KX494399		GenBank ENA
[Ref.: #67771]	Deinococcus taklimakanensis strain X-121 16S ribosomal RNA gene, partial sequence	EU718060	1384	GenBank ENA	536443 tax ID

[Ref.: #65272]	GC-content	63.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	63.6 mol%

Availability in culture collections External links

[Ref.: #65272]

Culture collection no.

CCTCC AB 207228, KCTC 33842

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus taklimakanensis sp. nov., isolated from desert soil.	Liu Z, Kim MC, Wang L, Zhu G, Zhang Y, Huang Y, Wei Z, Danzeng W, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.002168	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65272

Zuobing Liu, Myong Chol Kim, Liqiu Wang, Guoxin Zhu, Yumin Zhang, Yao Huang, Ziyan Wei, Wangmu Danzeng, Fang Peng: Deinococcus taklimakanensis sp. nov., isolated from desert soil. IJSEM 67: 4311 - 4316 2017 ( DOI 10.1099/ijsem.0.002168 , PubMed 28984562 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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