Aridibacter nitratireducens (DSM 102177, CECT 9235, A24_SHP_-5_238)

Name: Aridibacter nitratireducens (DSM 102177, CECT 9235, A24_SHP_-5_238)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158565

Type strain

Strain Designation A24_SHP_-5_238

Culture col. no. DSM 102177 CECT 9235 A24_SHP_-5_238

NCBI tax ID(s) 1911421

Special Collections DSMZ Literature strains

Links

Aridibacter nitratireducens A24_SHP_-5_238 is a Gram-negative prokaryote that was isolated from clayey sand soil sample.

Gram-negative 16S sequence

Name and taxonomic classification

SI-ID 403565

CECT 9235,DSM 102177

@ref 20215

Last LPSN update 2025-12-16 10:08:03

Domain Pseudomonadati

Phylum Acidobacteriota

Class Blastocatellia

Order Blastocatellales

Family Blastocatellaceae

Genus Aridibacter

Species Aridibacter nitratireducens

Full scientific name Aridibacter nitratireducens Huber et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width
65264	negative	1.5 µm	0.4 µm

Colony morphology

@ref	Colony size	Colony color	Medium used
65264	0.1-2 mm	orange to salmon-colour	agar plates

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65264	agar plates
125203	SSE/HD1:10 (DSMZ Medium 1426)		Medium recipe at MediaDive	Name: SSE/HD1:10 (DSMZ Medium 1426) Composition: MES 1.95 g/l Peptone 0.5 g/l CaSO4 x 2 H2O 0.4303 g/l MgSO4 x 7 H2O 0.3695 g/l Yeast extract 0.25 g/l Na NO3 0.212 g/l CaCl2 x 2 H2O 0.1469 g/l Ca(NO3)2 x 4 H2O 0.118 g/l MgCl2 x 6 H2O 0.1018 g/l Glucose 0.1 g/l (NH4)2SO4 0.09915 g/l NH4Cl 0.05345 g/l K2SO4 0.0435 g/l FeSO4 x 7 H2O 0.00555 g/l KH2PO4 0.00340213 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l Lipoic acid 5e-06 g/l D-Calcium pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine-HCl x 2 H2O 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65264	positive	growth	8-45
65264	positive	optimum	33-40
125203	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
65264	positive	optimum	7-8.5
65264	positive	growth	6-9	alkaliphile

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65264	NaCl	positive	growth	0-5 %(w/v)
65264	NaCl	positive	optimum	0.25-0.5 %(w/v)

Observation

65264

ObservationUnder optimum conditions, doubling time is 6.3 h.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65264	52682 ChEBI	1,2-butandiol	-	assimilation
65264	16997 ChEBI	1,2-propandiol	-	assimilation
65264	62064 ChEBI	2,3-butanediol	-	assimilation
65264	64552 ChEBI	2-hydroxybutyrate	-	assimilation
65264		2-oxogluconate	-	assimilation
65264	30916 ChEBI	2-oxoglutarate	-	assimilation
65264	28644 ChEBI	2-oxopentanoate	-	assimilation
65264	16724 ChEBI	4-hydroxybutyrate	-	assimilation
65264	39150 ChEBI	4-oxopentanoate	-	assimilation
65264	30089 ChEBI	acetate	+	assimilation
65264	15688 ChEBI	acetoin	-	assimilation
65264	17128 ChEBI	adipate	-	assimilation
65264	16449 ChEBI	alanine	-	assimilation
65264	22605 ChEBI	arabinitol	-	assimilation
65264	22599 ChEBI	arabinose	-	assimilation
65264	29016 ChEBI	arginine	-	assimilation
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
65264	22651 ChEBI	ascorbate	+	assimilation
65264	35391 ChEBI	aspartate	+	assimilation
65264	16150 ChEBI	benzoate	-	assimilation
65264	8295 ChEBI	beta-hydroxybutyrate	-	assimilation
65264	28885 ChEBI	butanol	-	assimilation
65264	17968 ChEBI	butyrate	-	assimilation
65264		casamino acids	+	assimilation
65264		casein hydrolysate	+	assimilation
65264	17057 ChEBI	cellobiose	-	assimilation
65264	16947 ChEBI	citrate	-	assimilation
65264	35899 ChEBI	crotonate	-	assimilation
65264	15356 ChEBI	cysteine	-	assimilation
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
65264	27689 ChEBI	decanoate	-	assimilation
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
65264	33946 ChEBI	erythrose	-	assimilation
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
65264	16236 ChEBI	ethanol	-	assimilation
65264	29362 ChEBI	ethylene	-	assimilation
65264		fermented rumen extract	+	assimilation
65264	15740 ChEBI	formate	-	assimilation
65264	28757 ChEBI	fructose	-	assimilation
65264	33984 ChEBI	fucose	-	assimilation
65264	29806 ChEBI	fumarate	-	assimilation
65264	16813 ChEBI	galactitol	-	assimilation
65264	28260 ChEBI	galactose	-	assimilation
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
65264	24265 ChEBI	gluconate	-	assimilation
65264	5417 ChEBI	glucosamine	-	assimilation
65264	17234 ChEBI	glucose	-	fermentation
65264	17234 ChEBI	glucose	+	assimilation
65264	24297 ChEBI	glucuronate	-	assimilation
65264	29987 ChEBI	glutamate	+	assimilation
65264	28300 ChEBI	glutamine	-	assimilation
65264	17754 ChEBI	glycerol	-	assimilation
65264	15428 ChEBI	glycine	-	assimilation
65264	13643 ChEBI	glycol	-	assimilation
65264	29805 ChEBI	glycolate	-	assimilation
65264	36655 ChEBI	glyoxylate	-	assimilation
65264	32362 ChEBI	heptanoate	-	assimilation
65264	27570 ChEBI	histidine	-	assimilation
65264	24741 ChEBI	hydroxyproline	-	assimilation
65264	48944 ChEBI	isobutyrate	-	assimilation
65264	16087 ChEBI	isocitrate	-	assimilation
65264	24898 ChEBI	isoleucine	-	assimilation
65264	48942 ChEBI	isovalerate	-	assimilation
65264	17196 ChEBI	L-asparagine	-	assimilation
65264	24996 ChEBI	lactate	+	assimilation
65264	17716 ChEBI	lactose	-	assimilation
65264	6364 ChEBI	laminarin	-	assimilation
65264	25017 ChEBI	leucine	-	assimilation
65264	25094 ChEBI	lysine	-	assimilation
65264	25097 ChEBI	lyxose	-	assimilation
65264	25115 ChEBI	malate	-	assimilation
65264	18300 ChEBI	maleic acid	-	assimilation
65264	15792 ChEBI	malonate	-	assimilation
65264	17306 ChEBI	maltose	+	assimilation
65264	29864 ChEBI	mannitol	-	assimilation
65264	37684 ChEBI	mannose	+	assimilation
65264	28053 ChEBI	melibiose	-	assimilation
65264	17790 ChEBI	methanol	-	assimilation
65264	16811 ChEBI	methionine	-	assimilation
65264	17268 ChEBI	myo-inositol	-	assimilation
65264	28037 ChEBI	N-acetylgalactosamine	-	assimilation
65264	506227 ChEBI	N-acetylglucosamine	-	assimilation
65264	32544 ChEBI	nicotinate	-	assimilation
65264	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
65264	25646 ChEBI	octanoate	-	assimilation
65264	18257 ChEBI	ornithine	+	assimilation
65264	16452 ChEBI	oxaloacetate	-	assimilation
65264		peptone	+	assimilation
65264	28044 ChEBI	phenylalanine	-	assimilation
65264	26271 ChEBI	proline	+	assimilation
65264	28831 ChEBI	propanol	-	assimilation
65264	17272 ChEBI	propionate	-	assimilation
65264	36241 ChEBI	protocatechuate	-	assimilation
65264	15361 ChEBI	pyruvate	-	assimilation
65264	16634 ChEBI	raffinose	-	assimilation
65264	26546 ChEBI	rhamnose	-	assimilation
65264	15963 ChEBI	ribitol	-	assimilation
65264	17822 ChEBI	serine	-	assimilation
65264	36208 ChEBI	shikimate	-	assimilation
65264	30911 ChEBI	sorbitol	-	assimilation
65264	27922 ChEBI	sorbose	-	assimilation
65264	30031 ChEBI	succinate	-	assimilation
65264	17992 ChEBI	sucrose	-	assimilation
65264	30929 ChEBI	tartrate	-	assimilation
65264	26986 ChEBI	threonine	+	assimilation
65264	27082 ChEBI	trehalose	-	assimilation
65264		trimethoxybenzoate	-	assimilation
65264	27897 ChEBI	tryptophan	-	assimilation
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
65264	53426 ChEBI	tween 80	-	assimilation
65264	18186 ChEBI	tyrosine	-	assimilation
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
65264	27266 ChEBI	valine	-	assimilation
65264	17151 ChEBI	xylitol	-	assimilation
65264	18222 ChEBI	xylose	-	assimilation
65264		yeast extract	+	assimilation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
65264	35581 ChEBI	indole
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
65264	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
65264	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
65264	alpha-chymotrypsin	+	3.4.21.1
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
65264	alpha-fucosidase	-	3.2.1.51
68382	alpha-fucosidase	-	3.2.1.51	from API zym
65264	alpha-galactosidase	-	3.2.1.22
68382	alpha-galactosidase	-	3.2.1.22	from API zym
65264	alpha-glucosidase	-	3.2.1.20
68382	alpha-glucosidase	-	3.2.1.20	from API zym
65264	alpha-mannosidase	-	3.2.1.24
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
65264	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
65264	beta-glucosidase	-	3.2.1.21
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
65264	beta-glucuronidase	-	3.2.1.31
68382	beta-glucuronidase	-	3.2.1.31	from API zym
65264	cystine arylamidase	+	3.4.11.3
68382	cystine arylamidase	+	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
65264	esterase (C 4)	+
68382	esterase (C 4)	+		from API zym
65264	esterase Lipase (C 8)	+
68369	gelatinase	+		from API 20NE
65264	leucine arylamidase	+	3.4.11.1
68382	leucine arylamidase	+	3.4.11.1	from API zym
65264	lipase (C 14)	-
68382	lipase (C 14)	-		from API zym
65264	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
65264	naphthol-AS-BI-phosphohydrolase	+
65264	trypsin	+	3.4.21.4
68382	trypsin	+	3.4.21.4	from API zym
65264	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
65264	valine arylamidase	+
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

65264

Fatty acid	Percentage
C15:1 iso H/C13:0 3-OH	23.53
C15:0 ISO	21.55
C16:1ω7c/C16:1ω6c	17.94
C17:0 anteiso	9.07
C16:0	5.6
C15:0 ANTEISO	5.27
C13:0 iso	2.49
C17:1 anteiso A	2.15
C17:1 iso ω9c	1.96
C17:0 iso 3OH	1.77
C16:0 iso	1.28
C12:0	1
C14:1ω5c	0.99
C17:0 iso	0.84
C16:0 anteiso	0.84
C20:0	0.66
C15:1 ANTEISO A	0.64
C14:0	0.47
C15:1ω6c	0.38
C18:0	0.33
C17:0	0.26
C13:0 iso 3OH	0.24
C15:0	0.2
C16:0 iso 3OH	0.2
C11:0 iso	0.19
C14:0 ISO	0.15

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
65264	+	+	+	+/-	-	+	+	+	+	+	+	+/-	-	-	-	-	-	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
65264	+	-	-	-	-	+	+	-	+	+/-	+/-	+/-	+/-	+/-	+/-	-	+/-	+/-	+/-	+/-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65264	clayey sand soil sample	2015	Eikwe	Ghana	GHA	Africa	4.9649	-2.4709 4.9649/-2.4709	10 mM 3-[4-(2-hydroxyethyl)-1-piperazinyl]propanesulfonic acid	6 weeks	20	Soil was suspended in 10 mM 3-[4-(2-hydroxyethyl)-1-piperazinyl]propanesulfonic acid (HEPPS; pH 8.0), serially diluted, and 100 µl of each of the respective dilutions was plated on soil solution equivalent (SSE)/yeast peptone (HP) plates solidified with Gelrite as described previously [6]. Cultivation for 6 weeks at 20°C.
125203	clayey sand soil from a pasture		Eikwe (4° 57' 53.68'' N 2° 28' 15.33'' W)	Ghana	GHA	Africa	4.9649	-2.471 4.9649/-2.471

Taxonmaps

69479

Global distribution of 16S sequence KX443571 (>99% sequence identity) for Aridibacter nitratireducens subclade from Microbeatlas

Aquatic Samples	148
Soil Samples	450
Animal Samples	84
Plant Samples	55
Total Samples	737

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
125203	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Database
65264	Aridibacter nitratireducens strain A_24_SHP_-5_238 16S ribosomal RNA gene, complete sequence	KX443571

GC content

@ref	GC-content (mol%)	Method
65264	53.5	genome sequence analysis
125203	53.5	sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aridibacter nitratireducens sp. nov., a member of the family Blastocatellaceae, class Blastocatellia, isolated from an African soil.	Huber KJ, Geppert AM, Gross U, Luckner M, Wanner G, Cooper P, Abakah J, Janssen I, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002318	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65264	Katharina J. Huber, Alicia M. Geppert, Uwe Groß, Manja Luckner, Gerhard Wanner, Paul Cooper, John Abakah, Iryna Janssen, Jörg Overmann: Aridibacter nitratireducens sp. nov., a member of the family Blastocatellaceae, class Blastocatellia, isolated from an African soil. IJSEM 67: 4487 - 4493 2017 ( DOI 10.1099/ijsem.0.002318 , PubMed 28945537 )
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125203	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102177
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Aridibacter nitratireducens (DSM 102177, CECT 9235, A24_SHP_-5_238)

Name and taxonomic classification