Name: Tsuneonella mangrovi C9-11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158561

Type strain:

Species: Tsuneonella mangrovi

Strain Designation: C9-11

Culture col. no.: MCCC 1K03311, JCM 32056

Strain history: T. Yun; Xiamen Univ., China; C9-11.

NCBI tax ID(s): 1982042 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Tsuneonella mangrovi C9-11 is a facultative anaerobe, Gram-negative, rod-shaped bacterium that was isolated from mangrove sediment sample.

Gram-negative
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Tsuneonella*
	Species	**Tsuneonella mangrovi**
	Full Scientific Name (LPSN)	Tsuneonella mangrovi (Liao et al. 2017) Xu et al. 2020

Synonym

Altererythrobacter mangrovi

Information on morphological and physiological properties Morphology

[Ref.: #65258]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.6
[Ref.: #125438]	Gram stain	negative Confidence in %98.427

[Ref.: #65258]	Cell length	0.8-1.9 µm

[Ref.: #65258]	Cell width	0.3-0.6 µm

[Ref.: #65258]	Cell shape	rod-shaped

[Ref.: #65258]	Motility	no

[Ref.: #65258]	Colony size	0.5-2 mm
[Ref.: #65258]	Colony color	yellow
[Ref.: #65258]	Incubation period	3 days
[Ref.: #65258]	Cultivation medium used	2216 E agar

[Ref.: #65258]	Pigment production	no
[Ref.: #65258]	Pigment name	Bacteriochlorophyll a
[Ref.: #65258]	Pigment production	no
[Ref.: #65258]	Pigment name	flexirubin-type pigments
[Ref.: #65258]	Pigment production	yes
[Ref.: #65258]	Pigment name	carotinoid pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65258]

Culture medium

2216 E agar

[Ref.: #65258]

Culture medium growth

[Ref.: #65258]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65258]	growth	15-37 °C
[Ref.: #65258]	optimum	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #65258]			optimum	7
[Ref.: #65258]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65258]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.8

[Ref.: #125439]	Ability of spore formation	no Confidence in %97
[Ref.: #125438]	Ability of spore formation	no Confidence in %90.475

	Salt	Tested relation		Salt conc.
[Ref.: #65258]	NaCl		growth	0-4	%(w/v)
[Ref.: #65258]	NaCl		optimum	0.5-2	%(w/v)
[Ref.: #65258]	NaCl	no	growth	0	%(w/v)

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65258]	adipate ChEBI	+	assimilation
[Ref.: #65258]	casein	-	hydrolysis
[Ref.: #65258]	casein hydrolysate	-	hydrolysis
[Ref.: #65258]	chitin ChEBI	-	hydrolysis
[Ref.: #65258]	D-glucose ChEBI	+	fermentation
[Ref.: #65258]	D-glucose ChEBI	+/-	assimilation
[Ref.: #65258]	D-mannitol ChEBI	+	assimilation
[Ref.: #65258]	D-mannose ChEBI	+	assimilation
[Ref.: #65258]	esculin ChEBI	+	hydrolysis
[Ref.: #65258]	gelatin ChEBI	-	hydrolysis
[Ref.: #65258]	glucose ChEBI	+	builds acid from
[Ref.: #65258]	L-arabinose ChEBI	+	assimilation
[Ref.: #65258]	L-arginine ChEBI	-	assimilation
[Ref.: #65258]	L-rhamnose ChEBI	-	assimilation
[Ref.: #65258]	malate ChEBI	+	assimilation
[Ref.: #65258]	maltose hydrate	-	assimilation
[Ref.: #65258]	nitrate ChEBI	-	reduction
[Ref.: #65258]	potassium gluconate ChEBI	+	assimilation
[Ref.: #65258]	sodium citrate ChEBI	+	assimilation
[Ref.: #65258]	starch ChEBI	-	hydrolysis
[Ref.: #65258]	sucrose ChEBI	-	assimilation
[Ref.: #65258]	tween 20 ChEBI	+	hydrolysis
[Ref.: #65258]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65258]	tween 60 ChEBI	+	hydrolysis
[Ref.: #65258]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65258]	urea ChEBI	-	hydrolysis
[Ref.: #65258]	xylose ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65258]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65258]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65258]	cefazolin ChEBI	yes	30	µg (disc)
[Ref.: #65258]	cefoperazone ChEBI	yes	30	µg (disc)
[Ref.: #65258]	cephalexin ChEBI	yes	30	µg (disc)
[Ref.: #65258]	cephradine ChEBI	yes	30	µg (disc)
[Ref.: #65258]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65258]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #65258]	colistin ChEBI				yes	10	µg (disc)
[Ref.: #65258]	doxycycline ChEBI	yes	30	µg (disc)
[Ref.: #65258]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65258]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65258]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65258]	minocycline ChEBI	yes	30	µg (disc)
[Ref.: #65258]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #65258]	norfloxacin ChEBI				yes	10	µg (disc)
[Ref.: #65258]	novobiocin ChEBI				yes	5	µg (disc)
[Ref.: #65258]	ofloxacin ChEBI	yes	5	µg (disc)
[Ref.: #65258]	oxacillin ChEBI	yes	1	µg (disc)
[Ref.: #65258]	penicillin g ChEBI	yes	10	Unit
[Ref.: #65258]	piperacillin ChEBI	yes	100	µg (disc)
[Ref.: #65258]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #65258]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #65258]	sulfisoxazole ChEBI	yes	300	µg (disc)
[Ref.: #65258]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #65258]	trimethoprim ChEBI	yes	5	µg (disc)
[Ref.: #65258]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65258]		acetoin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #65258]	acid phosphatase	+	3.1.3.2
[Ref.: #65258]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65258]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65258]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65258]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65258]	beta-galactosidase	+	3.2.1.23
[Ref.: #65258]	beta-glucosidase	+	3.2.1.21
[Ref.: #65258]	beta-glucuronidase	+	3.2.1.31
[Ref.: #65258]	catalase	+	1.11.1.6
[Ref.: #65258]	cystine aminopeptidase	+	3.4.11.3
[Ref.: #65258]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65258]	esterase (C 4)	+
[Ref.: #65258]	esterase Lipase (C 8)	+
[Ref.: #65258]	gelatinase	-
[Ref.: #65258]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #65258]	lipase (C 14)	+
[Ref.: #65258]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65258]	trypsin	+	3.4.21.4
[Ref.: #65258]	valine aminopeptidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65258]

Fatty acid	Percentage
C18:1ω7c	41.6
C17:1ω6c	15.4
11-methyl C18:1ω7c	8.1
C16:1ω7c and/or C16:1ω6c	7.4
C16:0	6.2
C17:1ω8c	2.6
C14:0 anteiso	1.6
C14:0 2OH	1.5
C18:0	1.3
iso-C17:1ω9c and/or C16:0 10-methyl	1.3
C13:0 anteiso	1.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65258]	Sample type/isolated from	mangrove sediment sample
[Ref.: #65258]	Sampling date	2016-09
[Ref.: #65258]	Geographic location (country and/or sea, region)	Yunxiao Mangrove National Nature Reserve in Zhangzhou, Fujian province
[Ref.: #65258]	Country	China
[Ref.: #65258]	Country ISO 3 Code	CHN
[Ref.: #65258]	Continent	Asia
[Ref.: #65258]	Geographic location	24.8666°/117.5830°
[Ref.: #65258]	Enrichment culture	2216 E agar
[Ref.: #65258]	Enrichment culture composition	5 g peptone, 1 g yeast extract, 0.0744 g KH2PO4 , 0.002 g Fe2(SO4)3 , 12 g agar, 750 ml aged seawater, 250 ml distilled water, pH 7.0-7.2
[Ref.: #65258]	Enrichment culture duration	1 week
[Ref.: #65258]	Enrichment culture temperature	30 ̊C
[Ref.: #65258]	Isolation/enrichment procedure	The sample was enriched with benzo[a] pyrene (10 ppm) for 6 months, and serial dilutions of 10-2, 10-3 and 10-4 were selected and 100 µl portion was spread on 2216 E agar. The plates were aerobically incubated in the dark at 30°C for 7 days.

[Ref.: #67770]	Sample type/isolated from	Mangrove sediment in Zhangzhou
[Ref.: #67770]	Geographic location (country and/or sea, region)	Fujian Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Sediment
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65258]	Tsuneonella mangrovi strain C9-11 16S ribosomal RNA gene, partial sequence	MF034045		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tsuneonella mangrovi C9-11	GCA_002269345	complete	GenBank ENA	1982042 tax ID	*
[Ref.: #66792]	Tsuneonella mangrovi C9-11	2757321001	complete	JGI IMG/M	1982042 tax ID	*

[Ref.: #65258]

GC-content

63.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Tsuneonella mangrovi C9-11 NCBI: GCA_002269345.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.427	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.335	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	80.673	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.475	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.721	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	64.896	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tsuneonella mangrovi C9-11 IMG: 2757321001
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	54.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.6
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.8

Availability in culture collections External links

[Ref.: #65258]

Culture collection no.

MCCC 1K03311, JCM 32056

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65258

Hu Liao, Yuqian Li, Mengjia Zhang, Xiaolan Lin, Qiliang Lai, Yun Tian: Altererythrobacter mangrovi sp. nov., isolated from mangrove sediment. IJSEM 67: 4851 - 4856 2017 ( DOI 10.1099/ijsem.0.002393 , PubMed 29022549 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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