Ruegeria marisrubri ZGT118 | Type strain | JCM 19519, ACCC 19862

Strain identifier

BacDive ID: 158547

Type strain:

Species: Ruegeria marisrubri

Strain Designation: ZGT118

Culture col. no.: JCM 19519, ACCC 19862

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Sequence information

External links

Ruegeria marisrubri ZGT118 is an aerobe, moderately halophilic, gram-negative bacterium that forms circular colonies and was isolated from water sample.

colony-forming
gram-negative
rod-shaped
aerobe
moderately halophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Alphaproteobacteria
	Order	Rhodobacterales
	Family	Rhodobacteraceae
	Genus	Ruegeria
	Species	Ruegeria marisrubri
	Full Scientific Name (PNU)	Ruegeria marisrubri Zhang et al. 2017

Information on morphological and physiological propertiesMorphology

[Ref.: #65241]	Gram stain	negative
[Ref.: #65241]	Cell length	2.0-5.0 µm
[Ref.: #65241]	Cell width	0.6-1.2 µm
[Ref.: #65241]	Cell shape	rod-shaped
[Ref.: #65241]	Motility	no

[Ref.: #65241]	Colony size	3 mm
[Ref.: #65241]	Colony color	beige
[Ref.: #65241]	Colony shape	circular
[Ref.: #65241]	Incubation period	3 days
[Ref.: #65241]	Cultivation medium used	marine agar

Information on culture and growth conditionsCulture and growth conditions

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Culture medium

Marine agar (MA)

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65241]			growth	20-50 ̊C
[Ref.: #65241]			optimum	37-40 ̊C

	pH	Kind of pH		pH
[Ref.: #65241]			optimum	7-7.5
[Ref.: #65241]			growth	6-8.5

Information on physiology and metabolismPhysiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

[Ref.: #65241]	Halophily / tolerance level	moderately halophilic
[Ref.: #65241]	Halophily / tolerance level	moderately halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65241]		NaCl		growth	0.5-2.6	M
[Ref.: #65241]		NaCl		optimum	1.5-2.0	M

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65241]	(S)-lactate ChEBI	-	carbon source
[Ref.: #65241]	1 % sodium lactate	+	carbon source
[Ref.: #65241]	2-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #65241]	2-oxobutanoate ChEBI	+	carbon source
[Ref.: #65241]	2-oxoglutarate ChEBI	-	carbon source
[Ref.: #65241]	3-hydroxybutyrate ChEBI	-	carbon source
[Ref.: #65241]	3-O-methyl-D-glucose ChEBI	-	carbon source
[Ref.: #65241]	4-hydroxyphenylacetic acid ChEBI	-	carbon source
[Ref.: #65241]	acetate ChEBI	-	assimilation
[Ref.: #65241]	acetate ChEBI	-	carbon source
[Ref.: #65241]	acetoacetate ChEBI	-	carbon source
[Ref.: #65241]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #65241]	alpha-lactose ChEBI	+	carbon source
[Ref.: #65241]	aztreonam ChEBI	-	carbon source
[Ref.: #65241]	bromosuccinate ChEBI	-	carbon source
[Ref.: #65241]	casein	+	assimilation
[Ref.: #65241]	cellobiose ChEBI	+	carbon source
[Ref.: #65241]	citrate ChEBI	-	carbon source
[Ref.: #65241]	D-arabitol ChEBI	+	carbon source
[Ref.: #65241]	D-aspartate ChEBI	-	carbon source
[Ref.: #65241]	D-fructose ChEBI	+	carbon source
[Ref.: #65241]	D-fructose 6-phosphate ChEBI	+	carbon source
[Ref.: #65241]	D-fucose ChEBI	-	carbon source
[Ref.: #65241]	D-galactose ChEBI	-	carbon source
[Ref.: #65241]	D-galacturonic acid ChEBI	-	carbon source
[Ref.: #65241]	D-glucose 6-phosphate ChEBI	-	carbon source
[Ref.: #65241]	D-glucuronate ChEBI	-	carbon source
[Ref.: #65241]	D-glucuronate ChEBI	+	carbon source
[Ref.: #65241]	D-malate ChEBI	-	carbon source
[Ref.: #65241]	D-mannitol ChEBI	-	carbon source
[Ref.: #65241]	D-mannose ChEBI	+	carbon source
[Ref.: #65241]	D-saccharate ChEBI	-	carbon source
[Ref.: #65241]	D-serine ChEBI	-	carbon source
[Ref.: #65241]	D-serine ChEBI	+	carbon source
[Ref.: #65241]	D-sorbitol ChEBI	-	carbon source
[Ref.: #65241]	D-trehalose ChEBI	-	carbon source
[Ref.: #65241]	dextrin ChEBI	+	carbon source
[Ref.: #65241]	formate ChEBI	-	carbon source
[Ref.: #65241]	fusidate ChEBI	+	carbon source
[Ref.: #65241]	galactarate ChEBI	-	carbon source
[Ref.: #65241]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #65241]	gelatin ChEBI	-	carbon source
[Ref.: #65241]	gelatin ChEBI	+	assimilation
[Ref.: #65241]	gentiobiose ChEBI	+	carbon source
[Ref.: #65241]	glucuronamide ChEBI	-	carbon source
[Ref.: #65241]	glycerol ChEBI	+	carbon source
[Ref.: #65241]	glycine-proline ChEBI	+	carbon source
[Ref.: #65241]	inosine ChEBI	-	carbon source
[Ref.: #65241]	L-alanine ChEBI	-	carbon source
[Ref.: #65241]	L-arginine ChEBI	+	carbon source
[Ref.: #65241]	L-aspartate ChEBI	+	carbon source
[Ref.: #65241]	L-fucose ChEBI	-	carbon source
[Ref.: #65241]	L-galactonic acid gamma-lactone ChEBI	+	carbon source
[Ref.: #65241]	L-glutamate ChEBI	+	carbon source
[Ref.: #65241]	L-histidine ChEBI	-	carbon source
[Ref.: #65241]	L-malate ChEBI	-	carbon source
[Ref.: #65241]	L-pyroglutamic acid ChEBI	-	carbon source
[Ref.: #65241]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65241]	L-serine ChEBI	+	carbon source
[Ref.: #65241]	lithium chloride ChEBI	-	carbon source
[Ref.: #65241]	maltose ChEBI	+	carbon source
[Ref.: #65241]	melibiose ChEBI	+	carbon source
[Ref.: #65241]	methyl (R)-lactate ChEBI	+	carbon source
[Ref.: #65241]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #65241]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #65241]	myo-inositol ChEBI	-	carbon source
[Ref.: #65241]	N-acetyl-D-mannosamine ChEBI	+	carbon source
[Ref.: #65241]	N-acetylgalactosamine ChEBI	-	carbon source
[Ref.: #65241]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #65241]	n-acetylneuraminate ChEBI	+	carbon source
[Ref.: #65241]	nalidixic acid ChEBI	+	carbon source
[Ref.: #65241]	nitrate ChEBI	+	reduction
[Ref.: #65241]	pectin ChEBI	+	carbon source
[Ref.: #65241]	potassium tellurite ChEBI	+	carbon source
[Ref.: #65241]	propionate ChEBI	-	carbon source
[Ref.: #65241]	quinate ChEBI	-	carbon source
[Ref.: #65241]	raffinose ChEBI	+	carbon source
[Ref.: #65241]	salicin ChEBI	+	carbon source
[Ref.: #65241]	sodium bromate ChEBI	-	carbon source
[Ref.: #65241]	sodium butyrate ChEBI	-	carbon source
[Ref.: #65241]	stachyose ChEBI	-	carbon source
[Ref.: #65241]	sucrose ChEBI	+	carbon source
[Ref.: #65241]	tryptophan ChEBI	-	energy source
[Ref.: #65241]	turanose ChEBI	-	carbon source
[Ref.: #65241]	tween 40 ChEBI	-	carbon source
[Ref.: #65241]	tween 80 ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65241]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65241]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65241]	erythromycin ChEBI	yes	15	µg (disc)
[Ref.: #65241]	gentamicin ChEBI				yes	10	µg (disc)
[Ref.: #65241]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65241]	penicillin g ChEBI	yes	10	µg (disc)
[Ref.: #65241]	polymyxin b ChEBI	yes	30	µg (disc)
[Ref.: #65241]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65241]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #65241]	vancomycin ChEBI				yes	30	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #65241]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #65241]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #65241]	acid phosphatase	-	3.1.3.2
[Ref.: #65241]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65241]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65241]	alpha-fucosidase	+	3.2.1.51
[Ref.: #65241]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65241]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65241]	alpha-mannosidase	+	3.2.1.24
[Ref.: #65241]	beta-galactosidase	+	3.2.1.23
[Ref.: #65241]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65241]	catalase	+	1.11.1.6
[Ref.: #65241]	cystine arylamidase	-	3.4.11.3
[Ref.: #65241]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65241]	esterase (C 4)	+
[Ref.: #65241]	esterase Lipase (C 8)	+
[Ref.: #65241]	leucine arylamidase	+	3.4.11.1
[Ref.: #65241]	lipase (C 14)	-
[Ref.: #65241]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65241]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #65241]	trypsin	+	3.4.21.4
[Ref.: #65241]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65241]	urease	-	3.5.1.5
[Ref.: #65241]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #65241]	Sample type/isolated from	water sample
[Ref.: #65241]	Sampling date	2011
[Ref.: #65241]	Geographic location (country and/or sea, region)	brine-seawater interface at Erba Deep in the Red Sea
[Ref.: #65241]	Country	Saudi Arabia
[Ref.: #65241]	Country ISO 3 Code	SAU
[Ref.: #65241]	Continent	Asia
[Ref.: #65241]	Geographic location	20.7300°/38.1833°
[Ref.: #65241]	Enrichment culture	50 % marine 2216 broth (MB; Difco) and 50 % sterilized in situ brine water
[Ref.: #65241]	Enrichment culture duration	1 week
[Ref.: #65241]	Enrichment culture temperature	28 ̊C
[Ref.: #65241]	Isolation/enrichment procedure	5 ml brine was used to inoculate 30 ml enrichment medium [50 % marine 2216 broth (MB; Difco) and 50 % sterilized in situ brine water]. The flasks were incubated at 28°C for 1 week, then plated onto marine 2216 agar (MA; Difco) plates amended to a final concentration of 10 % NaCl, and subsequently purified into single colonies using plates containing the same solidified media

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65241]	16S rRNA gene sequence	KP726356		GenBank

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GC-content

62.94 mol%

genome sequence analysis

Availability in culture collectionsExternal links

[Ref.: #65241]

Culture collection no.

JCM 19519, ACCC 19862

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#65241

Guishan Zhang, Mohamed Fauzi Haroon, Ruifu Zhang, Xiaoyan Dong, Dandan Wang, Yunpeng Liu, Weibing Xun, Xiuzhu Dong, Ulrich Stingl: Ruegeria profundi sp. nov. and Ruegeria marisrubri sp. nov., isolated from the brine–seawater interface at Erba Deep in the Red Sea. IJSEM 67: 4624 - 4631 2017 ( DOI 10.1099/ijsem.0.002344 )

* These References are textmined

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