Name: Roseomonas terricola EM302
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158546

Type strain:

Species: Roseomonas terricola

Strain Designation: EM302

Culture col. no.: KACC 13942, KCTC 42906, NBRC 111477

Strain history: <- Dong-Uk Kim, SNU

NCBI tax ID(s): 600629 (species)

Section

Roseomonas terricola EM302 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from soil sample from the top 15 cm of soil.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas terricola**
	Full Scientific Name (LPSN)	Roseomonas terricola Kim et al. 2017

Synonym

Falsiroseomonas terricola

Information on morphological and physiological properties Morphology

[Ref.: #65240]	Gram stain	negative

[Ref.: #65240]	Cell length	1.5-2.0 µm

[Ref.: #65240]	Cell width	0.8-1.0 µm

[Ref.: #65240]	Cell shape	rod-shaped
[Ref.: #65240]	Cell shape	coccus-shaped

[Ref.: #65240]	Motility	no

[Ref.: #65240]	Colony color	pink
[Ref.: #65240]	Colony shape	circular
[Ref.: #65240]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65240]

Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

		Temperature
[Ref.: #65240]	growth	15-40 °C
[Ref.: #65240]	optimum	35 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #65240]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65240]			optimum	7
[Ref.: #65240]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65240]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65240]		NaCl		growth	0	%(w/v)
[Ref.: #65240]		NaCl	no	growth	>0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65240]	adipate ChEBI	-	assimilation
[Ref.: #65240]	amygdalin ChEBI	-	fermentation
[Ref.: #65240]	cellulose ChEBI	-	hydrolysis
[Ref.: #65240]	chitin ChEBI	-	hydrolysis
[Ref.: #65240]	citrate ChEBI	+	assimilation
[Ref.: #65240]	D-glucose ChEBI	-	assimilation
[Ref.: #65240]	D-glucose ChEBI	-	fermentation
[Ref.: #65240]	D-mannitol ChEBI	-	assimilation
[Ref.: #65240]	D-mannitol ChEBI	-	fermentation
[Ref.: #65240]	D-mannose ChEBI	-	assimilation
[Ref.: #65240]	D-sorbitol ChEBI	-	fermentation
[Ref.: #65240]	decanoate ChEBI	-	assimilation
[Ref.: #65240]	esculin ChEBI	+	hydrolysis
[Ref.: #65240]	gelatin ChEBI	+	hydrolysis
[Ref.: #65240]	L-arabinose ChEBI	-	assimilation
[Ref.: #65240]	L-arabinose ChEBI	-	fermentation
[Ref.: #65240]	L-rhamnose ChEBI	-	fermentation
[Ref.: #65240]	malate ChEBI	-	assimilation
[Ref.: #65240]	maltose ChEBI	-	assimilation
[Ref.: #65240]	melibiose ChEBI	-	fermentation
[Ref.: #65240]	myo-inositol ChEBI	-	fermentation
[Ref.: #65240]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65240]	nitrate ChEBI	+	reduction
[Ref.: #65240]	phenylacetate ChEBI	-	assimilation
[Ref.: #65240]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65240]	sodium citrate ChEBI	-	assimilation
[Ref.: #65240]	starch ChEBI	-	hydrolysis
[Ref.: #65240]	sucrose ChEBI	-	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #65240]	acetoin ChEBI	no
[Ref.: #65240]	hydrogen sulfide ChEBI	no
[Ref.: #65240]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65240]	acid phosphatase	+	3.1.3.2
[Ref.: #65240]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65240]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65240]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65240]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65240]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65240]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65240]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65240]	beta-galactosidase	-	3.2.1.23
[Ref.: #65240]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65240]	catalase	+	1.11.1.6
[Ref.: #65240]	cystine arylamidase	-	3.4.11.3
[Ref.: #65240]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65240]	esterase (C 4)	+
[Ref.: #65240]	esterase Lipase (C 8)	+
[Ref.: #65240]	leucine arylamidase	-	3.4.11.1
[Ref.: #65240]	lipase (C 14)	-
[Ref.: #65240]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65240]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65240]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65240]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #65240]	trypsin	-	3.4.21.4
[Ref.: #65240]	tryptophan deaminase	-	4.1.99.1
[Ref.: #65240]	urease	+	3.5.1.5
[Ref.: #65240]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65240]

Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	69.8
C16:0	8.5
C18:0	3.6
C18:0 3OH	3.1
C18:1ω5c	2.7
C18:1ω9c	2
C16:1ω5c	1.9
C16:1ω7c and/or C16:1ω6c	1.9
C18:1ω7c 11-methyl	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65240]	Sample type/isolated from	soil sample from the top 15 cm of soil
[Ref.: #65240]	Geographic location (country and/or sea, region)	farmland located in Yesan-gun
[Ref.: #65240]	Country	Republic of Korea
[Ref.: #65240]	Country ISO 3 Code	KOR
[Ref.: #65240]	Continent	Asia
[Ref.: #65240]	Enrichment culture	R2A agar
[Ref.: #65240]	Enrichment culture duration	7 days
[Ref.: #65240]	Enrichment culture temperature	28 ̊C
[Ref.: #65240]	Isolation/enrichment procedure	The soil sample was taken from the top 15 cm of soil and sieved through a 2 mm pore mesh. One gram of the soil was homogenized in 9 ml of sterilized 0.85 % saline solution by shaking at 150 r.p.m. for 30 min on a rotary shaker. One millilitre of the sample was serially diluted and plated on R2A agar by dilution plating.

[Ref.: #67771]	Sample type/isolated from	From agricutural soil
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ654263 (>99% sequence identity) for Roseomonas terricola subclade from Microbeatlas

Aquatic Samples	7104
Soil Samples	4391
Animal Samples	780
Plant Samples	823
Total Samples	13098

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65240]	16S rRNA gene sequence	FJ654263		GenBank

[Ref.: #65240]

GC-content

65.7 mol%

real time PCR (RTD-PCR)

Availability in culture collections External links

[Ref.: #65240]

Culture collection no.

KACC 13942, KCTC 42906, NBRC 111477

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas terricola sp. nov., isolated from agricultural soil.	Kim DU, Lee H, Kim SG, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002389	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65240

Dong-Uk Kim, Hyosun Lee, Song-Gun Kim, Jong-Ok Ka: Roseomonas terricola sp. nov., isolated from agricultural soil. IJSEM 67: 4836 - 4841 2017 ( DOI 10.1099/ijsem.0.002389 , PubMed 28984215 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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