Mangrovitalea sediminis (MCCC 1K03312, JCM 32104, M11-4)

Name: Mangrovitalea sediminis (MCCC 1K03312, JCM 32104, M11-4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158538

Type strain

Strain Designation M11-4

Culture col. no. MCCC 1K03312 JCM 32104 M11-4

NCBI tax ID(s) 1982043

Special Collections JCM Literature strains

History T. Yun; Xiamen Univ., China; M11-4.

Links

Mangrovitalea sediminis M11-4 is a facultative anaerobe, Gram-negative, motile prokaryote that was isolated from mangrove sediment sample.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 390875

JCM 32104

@ref 20215

Last LPSN update 2026-02-09 11:38:21

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Mangrovitalea

Species Mangrovitalea sediminis

Full scientific name Mangrovitalea sediminis Liao et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
65226	negative	2.6-4.3 µm	0.6-0.8 µm	rod-shaped	monotrichous, polar
125439	negative					99.7
125439						90.1

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
65226	0.5-2 mm	white	3 days	2216 E agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
65226	2216 E agar		with 5.0 g peptone, 1.0 g yeast extract, KH2PO4 0.0744 g, Fe2(SO4 )3 0.002 g, agar 12 g, aged seawater 750 ml, distilled water 250 ml, pH 7.0

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65226	positive	growth	10-40
65226	positive	optimum	30	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH
65226	positive	optimum	6
65226	positive	growth	5-8
65226		growth	5

Physiology and metabolism

Oxygen tolerance

65226

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65226	NaCl	positive	growth	0.5-6 %(w/v)
65226	NaCl	positive	optimum	2-3 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65226	17128 ChEBI	adipate	-	assimilation
65226	27613 ChEBI	amygdalin	-	assimilation
65226	22599 ChEBI	arabinose	-	assimilation
65226		casein	-	hydrolysis
65226		casein hydrolysate	-	hydrolysis
65226	17029 ChEBI	chitin	-	hydrolysis
65226	16947 ChEBI	citrate	-	assimilation
65226	17634 ChEBI	D-glucose	-	assimilation
65226	17634 ChEBI	D-glucose	+	assimilation
65226	17634 ChEBI	D-glucose	+	fermentation
65226	16899 ChEBI	D-mannitol	-	assimilation
65226	16024 ChEBI	D-mannose	+	assimilation
65226	27689 ChEBI	decanoate	-	assimilation
65226	4853 ChEBI	esculin	-	hydrolysis
65226	5291 ChEBI	gelatin	-	hydrolysis
65226	17234 ChEBI	glucose	+	assimilation
65226	30849 ChEBI	L-arabinose	-	assimilation
65226	16467 ChEBI	L-arginine	-	assimilation
65226	62345 ChEBI	L-rhamnose	-	assimilation
65226	25115 ChEBI	malate	-	assimilation
65226	17306 ChEBI	maltose	+	assimilation
65226	29864 ChEBI	mannitol	-	assimilation
65226	28053 ChEBI	melibiose	-	assimilation
65226	17268 ChEBI	myo-inositol	-	assimilation
65226	506227 ChEBI	N-acetylglucosamine	-	assimilation
65226	17632 ChEBI	nitrate	-	reduction
65226	18401 ChEBI	phenylacetate	-	assimilation
65226	32032 ChEBI	potassium gluconate	-	assimilation
65226	26546 ChEBI	rhamnose	-	assimilation
65226	53258 ChEBI	sodium citrate	-	assimilation
65226	30911 ChEBI	sorbitol	-	assimilation
65226	28017 ChEBI	starch	-	hydrolysis
65226	17992 ChEBI	sucrose	-	assimilation
65226	53424 ChEBI	tween 20	+	hydrolysis
65226	53423 ChEBI	tween 40	+	hydrolysis
65226	53425 ChEBI	tween 60	+	hydrolysis
65226	53426 ChEBI	tween 80	+	hydrolysis
65226	16199 ChEBI	urea	-	hydrolysis
65226	18222 ChEBI	xylose	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
65226	28971	ampicillin	10 µg (disc)
65226	3393	carbenicillin	100 µg (disc)
65226	474053	cefazolin	30 µg (disc)
65226	3534	cephalexin	30 µg (disc)
65226	3547	cephradine	30 µg (disc)
65226	3745	clindamycin		2 µg (disc)
65226	37943	colistin		10 µg (disc)
65226	50845	doxycycline	30 µg (disc)
65226	48923	erythromycin	15 µg (disc)
65226	17833	gentamicin	10 µg (disc)
65226	6104	kanamycin	30 µg (disc)
65226	50694	minocycline	30 µg (disc)
65226	100246	norfloxacin	30 µg (disc)
65226	28368	novobiocin		5 µg (disc)
65226	7731	ofloxacin	30 µg (disc)
65226	7809	oxacillin		1 µg (disc)
65226	17334	penicillin	10 µg (disc)
65226	28077	rifampicin	5 µg (disc)
65226	17076	streptomycin	10 µg (disc)
65226	102484	sulfisoxazole	300 µg (disc)
65226	27902	tetracycline		30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
65226	15688 ChEBI	acetoin
65226	16136 ChEBI	hydrogen sulfide
65226	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
65226	acid phosphatase	+	3.1.3.2
65226	alkaline phosphatase	-	3.1.3.1
65226	alpha-chymotrypsin	-	3.4.21.1
65226	alpha-fucosidase	-	3.2.1.51
65226	alpha-galactosidase	-	3.2.1.22
65226	alpha-glucosidase	+	3.2.1.20
65226	alpha-mannosidase	-	3.2.1.24
65226	arginine dihydrolase	+	3.5.3.6
65226	beta-galactosidase	-	3.2.1.23
65226	beta-glucosidase	+/-	3.2.1.21
65226	beta-glucuronidase	+	3.2.1.31
65226	catalase	+	1.11.1.6
65226	cystine aminopeptidase	+	3.4.11.3
65226	cytochrome oxidase	+	1.9.3.1
65226	esterase (C 4)	+
65226	esterase Lipase (C 8)	+
65226	gelatinase	-
65226	leucine aminopeptidase	+	3.4.1.1
65226	lipase (C 14)	+
65226	lysine decarboxylase	-	4.1.1.18
65226	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65226	naphthol-AS-BI-phosphohydrolase	-
65226	ornithine decarboxylase	-	4.1.1.17
65226	trypsin	-	3.4.21.4
65226	tryptophan deaminase	-	4.1.99.1
65226	urease	-	3.5.1.5
65226	valine aminopeptidase	+

Fatty acid profile

Metadata FA analysis

@ref

65226

Fatty acid	Percentage
C16:0	32.3
C16:0 N alcohol	14.8
iso-C17:1ω9c and/or C16:0 10-methyl	13.3
C14:0 anteiso	13
C16:1ω7c and/or C16:1ω6c	8.2
C14:0	3.8
C12:0	3.7
C16:1ω11c	2.8
C18:1ω7c and/or C18:1ω6c	2.7
C12:0 3OH	2.5
C11:0 2OH	1.8
C12:0 iso	1.7
C14:0 3-OH and/or iso-C16:1	1.7
C13:0 anteiso	1.5
C11:0 anteiso	1.3

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Terrestrial	#Sediment
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65226	mangrove sediment sample	Yunxiao Mangrove National Nature Reserve, Zhangjiang estuary	China	CHN	Asia	24.8666	117.583 24.8666/117.583	MM2 medium	100 ml MM2 medium with [(NH4 )2SO4 0.23 g, K2HPO4 0.0136 g, FeSO4 0.00028 g, aged seawater 750 ml, distilled water 250 ml, pH 7.0-7.2] with additional benzo[a]pyrene (10ppm)	4 weeks	28	incubated at 28°C and 150 r.p.m. in the dark for four weeks; and a 40 ml aliquot of the enriched culture was transferred into fresh benzo[a]pyrene -MM2 medium for the second enrichment. This step was repeated eight times, then serial dilutions of 10^-2, 10^-3, 10^-4 were selected and a 100 µl portion was spread on MM2 agar (1000 ml MM2 medium with 12 g agar) plate with additional benzo[a]pyrene [10 µl benzo[a]pyrene (10ppm) was spread on every plate]. The plates were aerobically incubated in the
67770	Mangrove sediment in Yunxiao Mangrove National Nature Reserve		China	CHN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM251472v1 assembly for Mangrovitalea sediminis M11-4	contig	GCA_002514725	1982043.5	2788500092	1982043	74.6

16S sequences

@ref	Description	Accession	Database
65226	Mangrovitalea sediminis strain M11-4 16S ribosomal RNA gene, partial sequence	MF034046

GC content

@ref	GC-content (mol%)	Method
67770	58.2	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Mangrovitalea sediminis M11-4
NCBI: GCA_002514725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	90.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	62.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mangrovitalea sediminis gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from mangrove sediment.	Liao H, Li Y, Guo X, Lin X, Lai Q, Xu H, Zheng T, Tian Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002433	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65226	Hu Liao, Yuqian Li, Xintong Guo, Xiaolan Lin, Qiliang Lai, Hong Xu, Tianling Zheng, Yun Tian: Mangrovitalea sediminis gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from mangrove sediment. IJSEM 67: 5172 - 5178 2017 ( DOI 10.1099/ijsem.0.002433 , PubMed 29043950 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Mangrovitalea sediminis (MCCC 1K03312, JCM 32104, M11-4)

Name and taxonomic classification