Name: Floricoccus penangensis HibF3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158536

Type strain:

Species: Floricoccus penangensis

Strain Designation: HibF3

Culture col. no.: LMG 29831, JCM 31735

Strain history: G. Rusul; Univ. Sains Malaysia, Malaysia; HibF3.

NCBI tax ID(s): 1859475 (species)

Section

Floricoccus penangensis HibF3 is a Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from fresh flowers of Hibiscus .

coccus-shaped
colony-forming
Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Floricoccus*
	Species	**Floricoccus penangensis**
	Full Scientific Name (LPSN)	Floricoccus penangensis Chuah et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65224]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #65224]	Cell shape	coccus-shaped

[Ref.: #65224]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.773

[Ref.: #65224]	Type of hemolysis	alpha
[Ref.: #65224]	Hemolysis ability	1
[Ref.: #65224]	Colony size	1-2 mm
[Ref.: #65224]	Colony color	cream-white
[Ref.: #65224]	Colony shape	circular
[Ref.: #65224]	Incubation period	1-2 days
[Ref.: #65224]	Cultivation medium used	all purpose Tween medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

all purpose Tween medium

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

brain-heart infusion broth

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

bile aesculin agar

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Culture medium growth

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Culture medium

brain-heart infusion agar

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Culture medium growth

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Culture medium

blood agar base

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

MRS

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Culture medium growth

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Culture medium

M17 lactose agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #65224]		growth	15-40 °C
[Ref.: #65224]		optimum	30-37 °C
[Ref.: #65224]	no	growth	7 °C
[Ref.: #65224]	no	growth	45 °C
[Ref.: #67770]		growth	30 °C

[Ref.: #65224]	Temperature range	mesophilic
[Ref.: #65224]	Temperature range	psychrophilic
[Ref.: #65224]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #65224]		growth	5
[Ref.: #65224]		growth	6
[Ref.: #65224]		growth	7.5
[Ref.: #65224]		growth	9
[Ref.: #65224]	no	growth	3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65224]	Type of spore	endospore
[Ref.: #65224]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #65224]	NaCl	no	growth	4	%
[Ref.: #65224]	NaCl	no	growth	5	%
[Ref.: #65224]	NaCl	no	growth	6.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65224]	2-oxogluconate	-	builds acid from
[Ref.: #65224]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65224]	amygdalin ChEBI	-	builds acid from
[Ref.: #65224]	arbutin ChEBI	+	builds acid from
[Ref.: #65224]	arginine ChEBI	+	hydrolysis
[Ref.: #65224]	beta-gentiobiose ChEBI	-	builds acid from
[Ref.: #65224]	cellobiose ChEBI	+	builds acid from
[Ref.: #65224]	citrate ChEBI	-	assimilation
[Ref.: #65224]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65224]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65224]	D-fructose ChEBI	+	builds acid from
[Ref.: #65224]	D-fucose ChEBI	-	builds acid from
[Ref.: #65224]	D-glucose ChEBI	+	builds acid from
[Ref.: #65224]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65224]	D-mannose ChEBI	+	builds acid from
[Ref.: #65224]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65224]	D-xylose ChEBI	-	builds acid from
[Ref.: #65224]	erythritol ChEBI	-	builds acid from
[Ref.: #65224]	esculin ChEBI	+	builds acid from
[Ref.: #65224]	galactitol ChEBI	-	builds acid from
[Ref.: #65224]	galactose ChEBI	-	builds acid from
[Ref.: #65224]	gelatin ChEBI	+	hydrolysis
[Ref.: #65224]	gluconate ChEBI	-	builds acid from
[Ref.: #65224]	glucose ChEBI	+	builds acid from
[Ref.: #65224]	glucose ChEBI	+	builds gas from
[Ref.: #65224]	glucose ChEBI	+	fermentation
[Ref.: #65224]	glycerol ChEBI	-	builds acid from
[Ref.: #65224]	glycogen ChEBI	+	builds acid from
[Ref.: #65224]	hippurate ChEBI	-	hydrolysis
[Ref.: #65224]	inulin ChEBI	-	builds acid from
[Ref.: #65224]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65224]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65224]	L-fucose ChEBI	-	builds acid from
[Ref.: #65224]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65224]	L-xylose ChEBI	-	builds acid from
[Ref.: #65224]	lactose ChEBI	-	builds acid from
[Ref.: #65224]	maltose ChEBI	+	builds acid from
[Ref.: #65224]	mannitol ChEBI	+	builds acid from
[Ref.: #65224]	melezitose ChEBI	+	builds acid from
[Ref.: #65224]	melibiose ChEBI	-	builds acid from
[Ref.: #65224]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65224]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65224]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65224]	milk	-	builds acid from
[Ref.: #65224]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65224]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65224]	raffinose ChEBI	-	builds acid from
[Ref.: #65224]	rhamnose ChEBI	-	builds acid from
[Ref.: #65224]	ribitol ChEBI	-	builds acid from
[Ref.: #65224]	ribose ChEBI	-	builds acid from
[Ref.: #65224]	salicin ChEBI	+	builds acid from
[Ref.: #65224]	sorbitol ChEBI	-	builds acid from
[Ref.: #65224]	sucrose ChEBI	+	builds acid from
[Ref.: #65224]	trehalose ChEBI	+	builds acid from
[Ref.: #65224]	turanose ChEBI	-	builds acid from
[Ref.: #65224]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65224]		acetoin ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #65224]		acetoin ChEBI	+
[Ref.: #65224]		glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #65224]	acid phosphatase	-	3.1.3.2
[Ref.: #65224]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65224]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65224]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65224]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65224]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65224]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65224]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65224]	beta-galactosidase	-	3.2.1.23
[Ref.: #65224]	beta-glucosidase	-	3.2.1.21
[Ref.: #65224]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65224]	catalase	-	1.11.1.6
[Ref.: #65224]	cystine arylamidase	-	3.4.11.3
[Ref.: #65224]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65224]	esterase (C 4)	-
[Ref.: #65224]	esterase Lipase (C 8)	-
[Ref.: #65224]	leucine aminopeptidase	-	3.4.1.1
[Ref.: #65224]	leucine arylamidase	-	3.4.11.1
[Ref.: #65224]	lipase (C 14)	-
[Ref.: #65224]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65224]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65224]	pyrrolidonyl arylamidase	-	3.4.19.3
[Ref.: #65224]	trypsin	-	3.4.21.4
[Ref.: #65224]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65224]	Sample type/isolated from	fresh flowers of Hibiscus (Hibiscus rosa-sinensis L.)
[Ref.: #65224]	Sampling date	2014-12-16
[Ref.: #65224]	Geographic location (country and/or sea, region)	campus ground of Universiti Sains Malaysia, in Penang
[Ref.: #65224]	Country	Malaysia
[Ref.: #65224]	Country ISO 3 Code	MYS
[Ref.: #65224]	Continent	Asia
[Ref.: #65224]	Enrichment culture	all purpose Tween media
[Ref.: #65224]	Enrichment culture composition	with 1 % sodium pyruvate
[Ref.: #65224]	Enrichment culture duration	1-2 days
[Ref.: #65224]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Fresh flowers of durian (Durio zibethinus) in an orchard in Teluk Bahang
[Ref.: #67770]	Host species	Durio zibethinus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Penang
[Ref.: #67770]	Country	Malaysia
[Ref.: #67770]	Country ISO 3 Code	MYS
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Flower
#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX185708 (>99% sequence identity) for Floricoccus from Microbeatlas

Aquatic Samples	684
Soil Samples	203
Animal Samples	8061
Plant Samples	218
Total Samples	9166

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65224]	16S rRNA gene sequence	KX185708		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Floricoccus penangensis HibF3	GCA_001832885	contig	GenBank	1859475 tax ID
[Ref.: #66792]	Floricoccus penangensis strain HibF3	1859475.4	wgs	PATRIC	1859475 tax ID	*
[Ref.: #66792]	Floricoccus penangensis HibF3	2788500174	draft	JGI IMG/M	1859475 tax ID	*

[Ref.: #67770]

GC-content

33.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Floricoccus penangensis strain HibF3 PATRIC: 1859475.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Floricoccus penangensis strain HibF3 PATRIC: 1859475.4
[Ref.: #69480]	motile	no	93.883	yes
[Ref.: #69480]	gram-positive	yes	96.773	yes
[Ref.: #69480]	anaerobic	no	92.068	no
[Ref.: #69480]	aerobic	no	96.508	no
[Ref.: #69480]	halophile	yes	82.842	no
[Ref.: #69480]	spore-forming	no	94.094	yes
[Ref.: #69480]	glucose-util	yes	87.656	no
[Ref.: #69480]	flagellated	no	96.201	yes
[Ref.: #69480]	thermophile	no	99.395	no
[Ref.: #69480]	glucose-ferment	yes	90.42	yes

Availability in culture collections External links

[Ref.: #65224]

Culture collection no.

LMG 29831, JCM 31735

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Partial rpoB Gene Sequencing Identification and Probiotic Potential of Floricoccus penangensis ML061-4 Isolated from Assam Tea (Camellia sinensis var. assamica).	Rungsirivanich P, Inta A, Tragoolpua Y, Thongwai N	Sci Rep	10.1038/s41598-019-52979-9	2019	*
Phylogeny	Floricoccus tropicus gen. nov., sp. nov. and Floricoccus penangensis sp. nov. isolated from fresh flowers of durian tree and hibiscus.	Chuah LO, Yap KP, Shamila-Syuhada AK, Thong KL, Ahmad R, Liong MT, Rusul G	Int J Syst Evol Microbiol	10.1099/ijsem.0.002386	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65224

Li-Oon Chuah, Kien-Pong Yap, Ahamed Kamal Shamila-Syuhada, Kwai Lin Thong, Rosma Ahmad, Min Tze Liong, Gulam Rusul: Floricoccus tropicus gen. nov., sp. nov. and Floricoccus penangensis sp. nov. isolated from fresh flowers of durian tree and hibiscus. IJSEM 67: 4979 - 4985 2017 ( DOI 10.1099/ijsem.0.002386 , PubMed 29034853 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Floricoccus penangensis strain HibF3

Floricoccus penangensis strain HibF3

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Change proposal