Streptomyces actinomycinicus (JCM 30864, TISTR 2208, PCU 342)

Name: Streptomyces actinomycinicus (JCM 30864, TISTR 2208, PCU 342)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158532

Type strain

Strain Designation RCU-197

Culture col. no. JCM 30864 TISTR 2208 PCU 342 DSM 111126 RCU-197

NCBI tax ID(s) 1695166

Special Collections DSMZ JCM Literature strains

Links

Streptomyces actinomycinicus RCU-197 is an aerobe, mesophilic prokaryote that builds branch substrate mycelia and aerial hyphae and has a yellow pigmentation.

pigmented aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398832

JCM 30864,DSM 111126

@ref 20215

Last LPSN update 2025-12-16 10:08:03

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces actinomycinicus

Full scientific name Streptomyces actinomycinicus Tanasupawat et al. 2016

Morphology

Multicellular morphology

@ref	Forms multicellular complex	Complex name	Complex color
65212		branch substrate mycelia and aerial hyphae	white to greenish-grey

Pigmentation

@ref	Production	Color
65212		yellow

Multimedia

@ref:	66446
multimedia content:	DSM_111126.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_111126.jpg
caption:	Medium 252 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65212	ISP2
65212	ISP3
65212	ISP4
65212	ISP5
65212	ISP7
65212	ISP6
65212	Nutrient agar (NA)
66446	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
66446	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water
66446	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65212	positive	optimum	30-37	mesophilic
66446	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
65212	positive	optimum	5-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65212	aerobe
125438	aerobe	90.651

Spore formation

@ref	Spore formation	Confidence
125438		92.353

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65212	NaCl	positive	growth	0-7 %(w/v)

Observation

@ref	Observation
65212	The N-acyl type of muramic acid is acetyl
65212	Major menaquinones are MK-9(H 6 ) and MK-9(H 8 )
67770	quinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65212	17057 ChEBI	cellobiose	+	assimilation
65212	62968 ChEBI	cellulose	-	assimilation
65212	16899 ChEBI	D-mannitol	+	assimilation
65212	16024 ChEBI	D-mannose	+	assimilation
65212	16988 ChEBI	D-ribose	+	assimilation
65212	65327 ChEBI	D-xylose	+	assimilation
65212	28757 ChEBI	fructose	+	assimilation
65212	16813 ChEBI	galactitol	-	assimilation
65212	5291 ChEBI	gelatin	+	hydrolysis
65212	17234 ChEBI	glucose	+	assimilation
65212	17754 ChEBI	glycerol	+	assimilation
65212	30849 ChEBI	L-arabinose	+	assimilation
65212	17268 ChEBI	myo-inositol	+	assimilation
65212	17632 ChEBI	nitrate	-	reduction
65212	16634 ChEBI	raffinose	+	assimilation
65212	17814 ChEBI	salicin	+	assimilation
65212		skimmed milk	+	assimilation
65212	28017 ChEBI	starch	+	hydrolysis
65212	17992 ChEBI	sucrose	-	assimilation

Enzymes

@ref	Value	Activity	Ec
65212	acid phosphatase	+	3.1.3.2
65212	alkaline phosphatase	+	3.1.3.1
65212	alpha-chymotrypsin	+	3.4.21.1
65212	alpha-fucosidase	-	3.2.1.51
65212	alpha-galactosidase	+	3.2.1.22
65212	alpha-glucosidase	+	3.2.1.20
65212	alpha-mannosidase	+	3.2.1.24
65212	beta-galactosidase	+	3.2.1.23
65212	beta-glucosidase	+	3.2.1.21
65212	cystine arylamidase	+	3.4.11.3
65212	esterase (C 4)	+
65212	esterase Lipase (C 8)	+
65212	leucine arylamidase	+	3.4.11.1
65212	N-acetyl-beta-glucosaminidase	+	3.2.1.52
65212	naphthol-AS-BI-phosphohydrolase	+
65212	trypsin	+	3.4.21.4
65212	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65212

Fatty acid	Percentage
C16:0 iso	25.8
C15:0 anteiso	25.1
C15:0 iso	11.2
C14:0 iso	10
C16:0	6.3
C17:0 anteiso	6.1
C17:0 iso	2.8
C15:0	1.6
C16:1 iso H	1.6
C16:1ω7c / C15:0 iso 2OH	1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
65212	soil	Nong Jum Rung peat swamp forest, Rayong Province	Thailand	THA	Asia
66446	Soil of a peat swamp forest	Rayong province, Thailand	Thailand	THA	Asia	12.6511	101.547 12.6511/101.547
67770	Soil of a peat swamp forest	Rayong Province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66446	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4243188v1 assembly for Streptomyces actinomycinicus PCU 342	scaffold	GCA_042431885			1695166	62.75
66792	ASM1674177v1 assembly for Streptomyces actinomycinicus RCU-197	contig	GCA_016741775	1695166.3	8111279598	1695166	58.32

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
65212	Streptomyces actinomycinicus gene for 16S ribosomal RNA, partial sequence, strain: RCU-197	LC069046
124043	Streptomyces actinomycinicus strain PCU 342 16S ribosomal RNA gene, partial sequence.	MT758154	1329	1695166
124043	Streptomyces actinomycinicus strain PCU 342 16S ribosomal RNA gene, partial sequence.	MT760010	1329	1695166

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces actinomycinicus RCU-197
NCBI: GCA_016741775.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.90	no
125438	anaerobic	anaerobicⓘ	no	96.37	yes
125438	aerobic	aerobicⓘ	yes	90.65	yes
125438	spore-forming	spore-formingⓘ	yes	92.35	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation, characterization and screening of phosphate (P) solubilizing actinomycetes and exploring its potency in finger millet (Eleusine coracana L.).	Babu PM, Panda N, Nayak RK, Sethi D, Biswal S, Mishra MK, Datta S, Karubakee S, Suchitha NS, Prusty M, Nayak A, Dash R, Pattanayak SK.	BMC Plant Biol	10.1186/s12870-025-06385-1	2025
	Streptomyces rugosispiralis sp. nov., a Novel Actinobacterium Isolated from Peat Swamp Forest Soil That Produces Ansamycin Derivatives and Nocardamines.	Weeraphan T, Supong K, Sripreechasak P, Jutakanoke R, Kowinthanaphat S, Tanasupawat S, Pittayakhajonwut P, Phongsopitanun W.	Antibiotics (Basel)	10.3390/antibiotics12091467	2023
Phylogeny	Streptomyces musisoli sp. nov., an actinomycete isolated from soil.	Duangupama T, Intaraudom C, Pittayakhajonwut P, Suriyachadkun C, Tadtong S, Sirirote P, Tanasupawat S, Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004857	2021
Phylogeny	Streptomyces actinomycinicus sp. nov., isolated from soil of a peat swamp forest.	Tanasupawat S, Phongsopitanun W, Suwanborirux K, Ohkuma M, Kudo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.000716	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65212	Somboon Tanasupawat, Wongsakorn Phongsopitanun, Khanit Suwanborirux, Moriya Ohkuma, Takuji Kudo: Streptomyces actinomycinicus sp. nov., isolated from soil of a peat swamp forest. IJSEM 66: 290 - 295 2016 ( DOI 10.1099/ijsem.0.000716 , PubMed 26510888 )
#66446	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111126
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces actinomycinicus (JCM 30864, TISTR 2208, PCU 342)

Name and taxonomic classification