Name: Cypionkella collinsensis 4-T-34
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158526

Type strain:

Species: Cypionkella collinsensis

Strain Designation: 4-T-34

Culture col. no.: CCTCC AB 2014005, LMG 28256

NCBI tax ID(s): 1603298 (species)

Section

Cypionkella collinsensis 4-T-34 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from till sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Cypionkella*
	Species	**Cypionkella collinsensis**
	Full Scientific Name (LPSN)	Cypionkella collinsensis (Zhang et al. 2016) Hördt et al. 2020

Synonym

Pseudorhodobacter collinsensis

Information on morphological and physiological properties Morphology

[Ref.: #65202]	Gram stain	negative

[Ref.: #65202]	Cell length	1.0-2.5 µm

[Ref.: #65202]	Cell width	0.5-1.0 µm

[Ref.: #65202]	Cell shape	rod-shaped

[Ref.: #65202]	Motility	no

[Ref.: #65202]	Colony size	0.5-1.0 mm
[Ref.: #65202]	Colony color	white and cream
[Ref.: #65202]	Colony shape	circular
[Ref.: #65202]	Incubation period	3 days
[Ref.: #65202]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

0.3 x R2A

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Culture medium growth

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Culture medium

tryptic soy agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

marine broth 2216

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65202]			growth	4-30 °C
[Ref.: #65202]			optimum	20-25 °C

	pH	Kind of pH		pH
[Ref.: #65202]			optimum	7.0
[Ref.: #65202]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65202]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65202]		NaCl		optimum	0	%(w/v)
[Ref.: #65202]		NaCl		growth	0-1.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65202]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65202]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #65202]	adipate ChEBI	+	assimilation
[Ref.: #65202]	amygdalin ChEBI	-	builds acid from
[Ref.: #65202]	arbutin ChEBI	-	builds acid from
[Ref.: #65202]	carboxymethylcellulose ChEBI	+	hydrolysis
[Ref.: #65202]	casein	-	hydrolysis
[Ref.: #65202]	cellobiose ChEBI	-	builds acid from
[Ref.: #65202]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65202]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65202]	D-fructose ChEBI	-	builds acid from
[Ref.: #65202]	D-fucose ChEBI	+	builds acid from
[Ref.: #65202]	D-galactose ChEBI	-	builds acid from
[Ref.: #65202]	D-glucose ChEBI	-	assimilation
[Ref.: #65202]	D-glucose ChEBI	-	builds acid from
[Ref.: #65202]	D-glucose ChEBI	-	fermentation
[Ref.: #65202]	D-lyxose ChEBI	+	builds acid from
[Ref.: #65202]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65202]	D-mannitol ChEBI	+	assimilation
[Ref.: #65202]	D-mannose ChEBI	-	assimilation
[Ref.: #65202]	D-mannose ChEBI	-	builds acid from
[Ref.: #65202]	D-ribose ChEBI	+	builds acid from
[Ref.: #65202]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65202]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65202]	D-xylose ChEBI	+	builds acid from
[Ref.: #65202]	decanoate ChEBI	-	assimilation
[Ref.: #65202]	erythritol ChEBI	+	builds acid from
[Ref.: #65202]	esculin ChEBI	+	builds acid from
[Ref.: #65202]	galactitol ChEBI	-	builds acid from
[Ref.: #65202]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65202]	glycerol ChEBI	-	builds acid from
[Ref.: #65202]	glycogen ChEBI	-	builds acid from
[Ref.: #65202]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #65202]	inulin ChEBI	-	builds acid from
[Ref.: #65202]	L-arabinose ChEBI	-	assimilation
[Ref.: #65202]	L-arabinose ChEBI	+	builds acid from
[Ref.: #65202]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65202]	L-fucose ChEBI	-	builds acid from
[Ref.: #65202]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #65202]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65202]	L-xylose ChEBI	+	builds acid from
[Ref.: #65202]	lactose ChEBI	-	builds acid from
[Ref.: #65202]	malate ChEBI	-	assimilation
[Ref.: #65202]	maltose ChEBI	-	builds acid from
[Ref.: #65202]	maltose ChEBI	+	assimilation
[Ref.: #65202]	melezitose ChEBI	-	builds acid from
[Ref.: #65202]	melibiose ChEBI	-	builds acid from
[Ref.: #65202]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65202]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #65202]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65202]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65202]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65202]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #65202]	nitrate ChEBI	-	reduction
[Ref.: #65202]	phenylacetate ChEBI	-	assimilation
[Ref.: #65202]	potassium gluconate ChEBI	-	assimilation
[Ref.: #65202]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65202]	raffinose ChEBI	-	builds acid from
[Ref.: #65202]	ribitol ChEBI	+	builds acid from
[Ref.: #65202]	salicin ChEBI	-	builds acid from
[Ref.: #65202]	sodium citrate ChEBI	-	assimilation
[Ref.: #65202]	starch ChEBI	-	builds acid from
[Ref.: #65202]	starch ChEBI	-	hydrolysis
[Ref.: #65202]	sucrose ChEBI	-	builds acid from
[Ref.: #65202]	trehalose ChEBI	-	builds acid from
[Ref.: #65202]	turanose ChEBI	-	builds acid from
[Ref.: #65202]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65202]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65202]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65202]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65202]	xanthine ChEBI	+	hydrolysis
[Ref.: #65202]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65202]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65202]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #65202]	chloramphenicol ChEBI				yes	30	µg (disc)
[Ref.: #65202]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65202]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65202]	lincomycin ChEBI				yes	2	µg (disc)
[Ref.: #65202]	neomycin ChEBI				yes	10	µg (disc)
[Ref.: #65202]	novobiocin ChEBI				yes	5	µg (disc)
[Ref.: #65202]	polymyxin b ChEBI	yes	300	Unit (disc)
[Ref.: #65202]	streptomycin ChEBI	yes	10	µg (disc)

	Metabolite	Production
[Ref.: #65202]	bacteriochlorophyll alpha ChEBI	no
[Ref.: #65202]	hydrogen sulfide ChEBI	no
[Ref.: #65202]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65202]	acid phosphatase	+	3.1.3.2
[Ref.: #65202]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65202]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65202]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65202]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65202]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65202]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65202]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65202]	beta-galactosidase	+	3.2.1.23
[Ref.: #65202]	beta-glucosidase	+	3.2.1.21
[Ref.: #65202]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65202]	catalase	+	1.11.1.6
[Ref.: #65202]	cystine arylamidase	-	3.4.11.3
[Ref.: #65202]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65202]	esterase (C 4)	+
[Ref.: #65202]	esterase Lipase (C 8)	+
[Ref.: #65202]	gelatinase	-
[Ref.: #65202]	leucine arylamidase	+	3.4.11.1
[Ref.: #65202]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65202]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65202]	trypsin	+	3.4.21.4
[Ref.: #65202]	urease	-	3.5.1.5
[Ref.: #65202]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65202]

Fatty acid	Percentage
C18:1ω7c	85.5
11-Methyl C18:1ω7c	3.2
C10:0 3OH	3
C16:0	1.7
C18:0	1.7
C18:0 3OH	1.7
C18:1ω9c	0.7
C15:0 anteiso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65202]	Sample type/isolated from	till sample
[Ref.: #65202]	Geographic location (country and/or sea, region)	Collins icecap front
[Ref.: #65202]	Country	Antarctica
[Ref.: #65202]	Country ISO 3 Code	ATA
[Ref.: #65202]	Continent	Australia and Oceania
[Ref.: #65202]	Geographic location	-62.1822°/-58.8666°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM978076 (>99% sequence identity) for Cypionkella from Microbeatlas

Aquatic Samples	2894
Soil Samples	192
Animal Samples	115
Plant Samples	132
Total Samples	3333

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65202]	16S rRNA gene sequence	KM978076		GenBank

[Ref.: #65202]

GC-content

61 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #65202]

Culture collection no.

CCTCC AB 2014005, LMG 28256

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65202

Yumin Zhang, Fan Jiang, Xulu Chang, Xia Qiu, Lvzhi Ren, Zhihao Qu, Sangsang Deng, Xuyang Da, Wenjing Kan, Myongchol Kim, Chengxiang Fang, Fang Peng: Pseudorhodobacter collinsensis sp. nov., isolated from a till sample of an icecap front. IJSEM 66: 178 - 183 2016 ( DOI 10.1099/ijsem.0.000693 , PubMed 26476707 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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