Name: Leucobacter muris 924/12
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158508

Type strain:

Species: Leucobacter muris

Strain Designation: 924/12

Culture col. no.: DSM 101948, CCM 8761

Strain history: <- L. Benga, Univ. Düsseldorf, Germany; 924/12

NCBI tax ID(s): 1935379 (species)

SI-ID 401997

DSM 101948

Section

Leucobacter muris 924/12 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from nose of a laboratory mouse.

colony-forming
Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter muris**
	Full Scientific Name (LPSN)	Leucobacter muris Benga et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68126]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #68126]	Cell shape	rod-shaped

[Ref.: #68126]	Motility	no

[Ref.: #68126]	Colony size	0.5-1.0 mm
[Ref.: #68126]	Colony color	white, opaque
[Ref.: #68126]	Colony shape	circular
[Ref.: #68126]	Incubation period	2 days
[Ref.: #68126]	Cultivation medium used	Columbia 5 % sheep blood

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65184]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #65184]

Culture medium growth

[Ref.: #65184]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65184]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #65184]	growth	28 °C
[Ref.: #68126]	growth	20-37 °C
[Ref.: #68126]	optimum	30-37 °C

[Ref.: #65184]	Temperature range	mesophilic
[Ref.: #68126]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68126]			optimum	6.0-8.0
[Ref.: #68126]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68126]

Oxygen tolerance

aerobe

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.996

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68126]		NaCl		growth	0-5	%
[Ref.: #68126]		NaCl		optimum	0-1	%

[Ref.: #68126]	Name of tolerated compound	Cr(VI)
[Ref.: #68126]	Tolerated concentration	12.5

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68126]	2-deoxyadenosine ChEBI	-	assimilation
[Ref.: #68126]	acetic acid ChEBI	-	assimilation
[Ref.: #68126]	adenosine ChEBI	-	assimilation
[Ref.: #68126]	alpha-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #68126]	D-fructose ChEBI	-	assimilation
[Ref.: #68126]	D-gluconate ChEBI	+	assimilation
[Ref.: #68126]	D-glucose ChEBI	-	assimilation
[Ref.: #68126]	D-lactic acid methyl ester	-	assimilation
[Ref.: #68126]	D-mannose ChEBI	-	assimilation
[Ref.: #68126]	D-psicose ChEBI	-	assimilation
[Ref.: #68126]	D-ribose ChEBI	-	assimilation
[Ref.: #68126]	D-sorbitol ChEBI	-	assimilation
[Ref.: #68126]	D-xylose ChEBI	-	assimilation
[Ref.: #68126]	dextrin ChEBI	-	assimilation
[Ref.: #68126]	glycerol ChEBI	+	assimilation
[Ref.: #68126]	glycogen ChEBI	-	assimilation
[Ref.: #68126]	glycyl-l-glutamate ChEBI	-	assimilation
[Ref.: #68126]	inulin ChEBI	-	assimilation
[Ref.: #68126]	L-alaninamide ChEBI	-	assimilation
[Ref.: #68126]	L-alanine ChEBI	-	assimilation
[Ref.: #68126]	L-alanylglycine ChEBI	-	assimilation
[Ref.: #68126]	L-arabinose ChEBI	-	assimilation
[Ref.: #68126]	L-asparagine ChEBI	-	assimilation
[Ref.: #68126]	L-glutamate ChEBI	-	assimilation
[Ref.: #68126]	L-lactate	-	assimilation
[Ref.: #68126]	L-rhamnose ChEBI	-	assimilation
[Ref.: #68126]	L-serine ChEBI	-	assimilation
[Ref.: #68126]	maltose ChEBI	-	assimilation
[Ref.: #68126]	methyl pyruvate ChEBI	-	assimilation
[Ref.: #68126]	monomethyl succinate ChEBI	-	assimilation
[Ref.: #68126]	myo-inositol ChEBI	-	assimilation
[Ref.: #68126]	N-acetyl-D-glucosamine ChEBI	-	assimilation
[Ref.: #68126]	propionate ChEBI	-	assimilation
[Ref.: #68126]	putrescine ChEBI	-	assimilation
[Ref.: #68126]	pyruvate ChEBI	-	assimilation
[Ref.: #68126]	succinate ChEBI	-	assimilation
[Ref.: #68126]	sucrose ChEBI	-	assimilation
[Ref.: #68126]	thymidine ChEBI	-	assimilation
[Ref.: #68126]	trehalose ChEBI	-	assimilation
[Ref.: #68126]	turanose ChEBI	-	assimilation
[Ref.: #68126]	tween 40 ChEBI	-	assimilation
[Ref.: #68126]	tween 80 ChEBI	-	assimilation
[Ref.: #68126]	xylitol ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68126]		catalase	-	1.11.1.6
[Ref.: #68126]		cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68126]

Fatty acid	Percentage
C15:0 anteiso	41.7
C17:0 anteiso	39.6
C16:0 iso	14.9
C16:0	2.3
C15:0 iso	0.4
C14:0 iso	0.3
C17:0 iso	0.2

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65184]	Sample type/isolated from	nose of a laboratory mouse
[Ref.: #65184]	Geographic location (country and/or sea, region)	Düsseldorf
[Ref.: #65184]	Country	Germany
[Ref.: #65184]	Country ISO 3 Code	DEU
[Ref.: #65184]	Continent	Europe

[Ref.: #68126]	Sample type/isolated from	nose of a laboratory mouse
[Ref.: #68126]	Sampling date	2012-08-01
[Ref.: #68126]	Geographic location (country and/or sea, region)	Heinrich Heine University Duesseldorf
[Ref.: #68126]	Country	Germany
[Ref.: #68126]	Country ISO 3 Code	DEU
[Ref.: #68126]	Continent	Europe
[Ref.: #68126]	Enrichment culture	Columbia blood agar
[Ref.: #68126]	Enrichment culture duration	2 days
[Ref.: #68126]	Enrichment culture temperature	37 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Muridae (Mouse/Rat)
#Host Body-Site	#Organ	#Nose
#Engineered	#Laboratory	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT797169 (>99% sequence identity) for Leucobacter from Microbeatlas

Aquatic Samples	361
Soil Samples	164
Animal Samples	797
Plant Samples	44
Total Samples	1366

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65184]	Leucobacter sp. DSM 101948 partial 16S rRNA gene, strain DSM101948, clone 924/12	LT797169	1516	ENA	1935379 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #68126]	Leucobacter muris DSM 101948	GCA_004028235	complete	GenBank	1935379 tax ID
[Ref.: #66792]	Leucobacter sp. DSM 101948	1935379.3	complete	PATRIC	1935379 tax ID	*
[Ref.: #66792]	Leucobacter muris DSM 101948	2841129318	complete	JGI IMG/M	1935379 tax ID	*

[Ref.: #68126]

GC-content

70.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leucobacter muris DSM 101948 NCBI: GCA_004028235.1
[Ref.: #69481]	spore-forming	no	89	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leucobacter sp. DSM 101948 PATRIC: 1935379.3
[Ref.: #69480]	motile	no	89.087	yes
[Ref.: #69480]	gram-positive	yes	91.192	yes
[Ref.: #69480]	anaerobic	no	99.34	no
[Ref.: #69480]	aerobic	yes	91.811	no
[Ref.: #69480]	halophile	no	85.255	no
[Ref.: #69480]	spore-forming	no	95.133	no
[Ref.: #69480]	glucose-util	yes	65.664	yes
[Ref.: #69480]	flagellated	no	97.371	no
[Ref.: #69480]	thermophile	no	99.054	yes
[Ref.: #69480]	glucose-ferment	no	90.924	no

Availability in culture collections External links

[Ref.: #65184]

Culture collection no.

DSM 101948, CCM 8761

[Ref.: #111303]

SI-ID 401997

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse.	Benga L, Sproer C, Schumann P, Verbarg S, Bunk B, Engelhardt E, Benten WPM, Sager M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003446	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65184

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101948

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68126

Laurentiu Benga, Cathrin Spröer, Peter Schumann, Susanne Verbarg, Boyke Bunk, Eva Engelhardt, W. Peter M. Benten and Martin Sager: Leucobacter muris sp. nov., isolated from the nose of a laboratory mouse. IJSEM 69: 2095 - 2100 2019 ( DOI 10.1099/ijsem.0.003446 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111303

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401997.1 )

* These data were automatically processed and therefore are not curated

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Leucobacter muris DSM 101948

Leucobacter sp. DSM 101948

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