Ligilactobacillus salitolerans (DSM 103433, JCM 31331, YK43)

Name: Ligilactobacillus salitolerans (DSM 103433, JCM 31331, YK43)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158499

Type strain

Strain Designation YK43

Culture col. no. DSM 103433 JCM 31331 YK43

NCBI tax ID(s) 1808352

Special Collections DSMZ JCM

History <- M. Tohno, National Agriculture and Food Research Organization, Nasushiobara, Japan; YK43 M. Tohno; NARO Inst. of Livestock & Grassland Sci., Japan; YK43.

Links

Ligilactobacillus salitolerans YK43 is a mesophilic prokaryote that was isolated from mushroom bed.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 408167

JCM 31331,DSM 103433

@ref 20215

Last LPSN update 2026-02-09 11:38:20

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Ligilactobacillus

Species Ligilactobacillus salitolerans

Full scientific name Ligilactobacillus salitolerans (Tohno et al. 2019) Zheng et al. 2020

Synonyms (1)

Lactobacillus salitolerans

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65175	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65175	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	microaerophile	96

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fungi	#Mushroom
#Engineered	#Agriculture	-
#Engineered	#Agriculture	#Garden

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65175	mushroom bed	Tochigi	Japan	JPN	Asia
67770	Spent mushroom substrates stored in Nagano		Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC127508 (>99% sequence identity) for Ligilactobacillus from Microbeatlas

Aquatic Samples	24
Soil Samples	15
Animal Samples	865
Plant Samples	12
Total Samples	916

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM386441v1 assembly for Ligilactobacillus salitolerans YK43	scaffold	GCA_003864415	2163553.3	2885669872	1808352	45.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65175	Lactobacillus salitolerans gene for 16S ribosomal RNA, partial sequence	LC127508	1488		1808352

GC content

@ref	GC-content (mol%)	Method
67770	43.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Ligilactobacillus salitolerans YK43
NCBI: GCA_003864415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	59.90	no
125439	motility	BacteriaNetⓘ	yes	62.20	no
125439	gram_stain	BacteriaNetⓘ	variable	79.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	96.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Ligilactobacillus salitolerans YK43
NCBI: GCA_003864415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.68	no
125438	anaerobic	anaerobicⓘ	no	83.28	no
125438	aerobic	aerobicⓘ	no	91.90	no
125438	spore-forming	spore-formingⓘ	no	79.53	no
125438	thermophilic	thermophileⓘ	no	96.37	no
125438	flagellated	motile2+ⓘ	yes	58.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus salitolerans sp. nov., a novel lactic acid bacterium isolated from spent mushroom substrates.	Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Nakamura Y, Ohkuma M, Kobayashi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003224	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65175	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103433
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ligilactobacillus salitolerans (DSM 103433, JCM 31331, YK43)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003864415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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