Peterkaempfera bronchialis (DSM 106435, 15-057A, ATCC BAA-2934)

Name: Peterkaempfera bronchialis (DSM 106435, 15-057A, ATCC BAA-2934)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158494

Type strain

Strain Designation 15-057A

Culture col. no. DSM 106435 15-057A ATCC BAA-2934

NCBI tax ID(s) 2126346

Special Collections DSMZ Wink compendium Literature strains

History <- B. A. Lasker , Center for Disease Control or Communicable Disease Center, United States Public Health Service, Atlanta, Georgia, USA; 15-057A

Links

Peterkaempfera bronchialis 15-057A is an aerobe, Gram-positive bacterium that was isolated from bronchial lavage of 80-year-old male patient.

Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399820

ATCC BAA-2934,DSM 106435

@ref 20215

Last LPSN update 2026-02-09 11:38:20

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Peterkaempfera

Species Peterkaempfera bronchialis

Full scientific name Peterkaempfera bronchialis (Nouioui et al. 2019) Madhaiyan et al. 2022

Synonyms (1)

Streptacidiphilus bronchialis

Morphology

Cell morphology

@ref	Gram stain	Confidence
67841	positive
125439	positive	99.9
125439		93.5
125438		91.6
125438	positive	92.209

Colony morphology

@ref	Type of hemolysis	Hemolysis ability	Colony color	Incubation period	Medium used
69317			Green brown (8000)		ISP 2
69317			Brown beige (1011)		ISP 4
69317			Beige (1001)		suter without tyrosine
69317			Beige (1001)		suter with tyrosine
69317			Basalt grey (7012), grey white (9002)		ISP 5
67841	gamma		white to light grey		Trypticase Soy Agar (TSA)
67841	alpha/beta	1	shiny white	5 days	heart infusion agar
69317			Ochre yellow (1024)		ISP 3
69317			Pale brown (8025), silk grey (7044)		ISP 7
69317			Sand yellow (1002)		ISP 6

Multicellular morphology

@ref	Complex color	Medium name	Further description	Complex name
67841	depending on medium: grey (GYM, ISP2 and ISP3 medium), beige (TSA), white (ISP7, N-Z amine agar and sucrose Bennett's	GYM, ISP2, ISP3, tryptic soy agar, ISP7, N-Z amine agar, sucrose Bennett?s	branched mycelium and aerial hyphae.
67841		ISP6
69317	Stone grey (7030), pure white (9010)	ISP 2		Aerial mycelium
69317	Stone grey (7030), dusty grey (7037)	ISP 3		Aerial mycelium
69317	Pure white (9010), stone grey (7030)	ISP 4		Aerial mycelium
69317		ISP 5		Aerial mycelium
69317		ISP 6		Aerial mycelium
69317		ISP 7		Aerial mycelium
69317		suter with tyrosine		Aerial mycelium
69317		suter without tyrosine		Aerial mycelium

Pigmentation

@ref	Production	Color	Name
69317			melanin pigment
69317		Green brown (8000), fawn brown (8007)	soluble pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65170	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
65170	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65170	positive	growth	30
67841	positive	growth	20-40

Culture pH

@ref	Ability	Type	PH
67841	positive	growth	5-7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67841	aerobe
125439	obligate aerobe	99.6

Spore formation

@ref	Spore formation	Confidence
125439		98
125438		92.995

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67841	NaCl	positive	growth	0-1 %(w/v)
69317	NaCl	positive	growth	0-2.5 %

Observation

67841

Observationacidophilic, non-acid fast

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67841	16651 ChEBI	(S)-lactate	-	carbon source
67841		1 % sodium lactate	+	growth
67841	64552 ChEBI	2-hydroxybutyrate	+	carbon source
67841	16763 ChEBI	2-oxobutanoate	+	carbon source
67841	16810 ChEBI	2-oxoglutarate	+	carbon source
67841	37054 ChEBI	3-hydroxybutyrate	+	carbon source
67841	73918 ChEBI	3-O-methyl-D-glucose	+	carbon source
67841	18101 ChEBI	4-hydroxyphenylacetic acid	+	carbon source
67841	30089 ChEBI	acetate	+	carbon source
67841	13705 ChEBI	acetoacetate	+	carbon source
67841	17925 ChEBI	alpha-D-glucose	+	carbon source
67841	36219 ChEBI	alpha-lactose	+	carbon source
69317	22599 ChEBI	arabinose	-	growth
67841	73706 ChEBI	bromosuccinate	+	carbon source
67841	17057 ChEBI	cellobiose	+	carbon source
69317	62968 ChEBI	cellulose	-	growth
67841	16947 ChEBI	citrate	+	carbon source
67841	18333 ChEBI	D-arabitol	+	carbon source
67841	29990 ChEBI	D-aspartate	+	carbon source
67841	15824 ChEBI	D-fructose	-	carbon source
67841	78697 ChEBI	D-fructose 6-phosphate	+	carbon source
67841	28847 ChEBI	D-fucose	+	carbon source
67841	12936 ChEBI	D-galactose	+	carbon source
67841	18024 ChEBI	D-galacturonic acid	+	carbon source
67841	30612 ChEBI	D-glucarate	-	carbon source
67841	8391 ChEBI	D-gluconate	-	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
67841	14314 ChEBI	D-glucose 6-phosphate	+	carbon source
67841	15748 ChEBI	D-glucuronate	+	carbon source
67841	15588 ChEBI	D-malate	+	carbon source
67841	16899 ChEBI	D-mannitol	+	carbon source
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
67841	16024 ChEBI	D-mannose	-	carbon source
67841	16523 ChEBI	D-serine	+	carbon source
67841	17924 ChEBI	D-sorbitol	-	carbon source
67841	16551 ChEBI	D-trehalose	+	carbon source
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
67841	23652 ChEBI	dextrin	+	carbon source
67841	4767 ChEBI	elastin	+	hydrolysis
67841	15740 ChEBI	formate	+	carbon source
69317	28757 ChEBI	fructose	+	growth
67841	16537 ChEBI	galactarate	+	carbon source
67841	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
67841	5291 ChEBI	gelatin	+	hydrolysis
67841	5291 ChEBI	gelatin	+	carbon source
67841	28066 ChEBI	gentiobiose	+	carbon source
69317	17234 ChEBI	glucose	+	growth
67841	32323 ChEBI	glucuronamide	+	carbon source
67841	17754 ChEBI	glycerol	+	carbon source
67841	70744 ChEBI	glycine-proline	+	carbon source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
67841	16235 ChEBI	guanine	+	hydrolysis
67841	17368 ChEBI	hypoxanthine	+	hydrolysis
67841	17596 ChEBI	inosine	+	growth
67841	17596 ChEBI	inosine	+	carbon source
69317	17268 ChEBI	inositol	-	growth
67841	16977 ChEBI	L-alanine	+	carbon source
67841	16467 ChEBI	L-arginine	+	carbon source
67841	29991 ChEBI	L-aspartate	+	carbon source
67841	18287 ChEBI	L-fucose	+	carbon source
67841	17464 ChEBI	L-galactonic acid gamma-lactone	+	carbon source
67841	29988 ChEBI	L-glutamate	+	carbon source
67841	15971 ChEBI	L-histidine	+	carbon source
67841	15589 ChEBI	L-malate	+	carbon source
67841	57606 ChEBI	L-pyroglutamate	+	carbon source
67841	62345 ChEBI	L-rhamnose	-	carbon source
67841	17115 ChEBI	L-serine	+	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
67841	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69317	37684 ChEBI	mannose	+	growth
67841	28053 ChEBI	melibiose	+	carbon source
67841	74611 ChEBI	methyl (R)-lactate	+	carbon source
67841	320055 ChEBI	methyl beta-D-glucopyranoside	+	carbon source
67841	51850 ChEBI	methyl pyruvate	+	carbon source
67841	17268 ChEBI	myo-inositol	+	carbon source
67841	63153 ChEBI	N-acetyl-D-mannosamine	+	carbon source
67841	28800 ChEBI	N-acetylgalactosamine	+	carbon source
67841	59640 ChEBI	N-acetylglucosamine	-	carbon source
67841	35418 ChEBI	n-acetylneuraminate	+	carbon source
67841	100147 ChEBI	nalidixic acid	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
67841	17309 ChEBI	pectin	+	growth
67841	17309 ChEBI	pectin	+	carbon source
67841	75248 ChEBI	potassium tellurite	+	growth
67841	17272 ChEBI	propionate	+	carbon source
67841	26490 ChEBI	quinate	+	carbon source
67841	16634 ChEBI	raffinose	+	carbon source
69317	16634 ChEBI	raffinose	-	growth
69317	26546 ChEBI	rhamnose	-	growth
67841	17814 ChEBI	salicin	+	carbon source
67841	17164 ChEBI	stachyose	+	carbon source
67841	28017 ChEBI	starch	+	hydrolysis
67841	17992 ChEBI	sucrose	+	carbon source
69317	17992 ChEBI	sucrose	+/-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
67841	32528 ChEBI	turanose	+	carbon source
67841	53424 ChEBI	tween 20	+	hydrolysis
67841	53423 ChEBI	tween 40	+	hydrolysis
67841	53423 ChEBI	tween 40	+	carbon source
67841	53425 ChEBI	tween 60	+	hydrolysis
67841	53426 ChEBI	tween 80	+	hydrolysis
67841	16199 ChEBI	urea	+	hydrolysis
69317	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	threonine metabolism	100	10 of 10
66794	glycine betaine biosynthesis	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	biotin biosynthesis	100	4 of 4
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	chorismate metabolism	100	9 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	100	3 of 3
66794	kanosamine biosynthesis II	100	2 of 2
66794	1,4-dihydroxy-6-naphthoate biosynthesis	100	6 of 6
66794	valine metabolism	100	9 of 9
66794	grixazone biosynthesis	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	cardiolipin biosynthesis	100	7 of 7
66794	acetate fermentation	100	4 of 4
66794	aspartate and asparagine metabolism	100	9 of 9
66794	ethanol fermentation	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	cellulose degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	mannosylglycerate biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	starch degradation	100	10 of 10
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	Entner Doudoroff pathway	90	9 of 10
66794	phenol degradation	90	18 of 20
66794	alanine metabolism	89.66	26 of 29
66794	pyrimidine metabolism	88.89	40 of 45
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	methionine metabolism	88.46	23 of 26
66794	vitamin B12 metabolism	88.24	30 of 34
66794	isoleucine metabolism	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	dTDPLrhamnose biosynthesis	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	tryptophan metabolism	86.84	33 of 38
66794	photosynthesis	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycolysis	82.35	14 of 17
66794	metabolism of disaccharids	81.82	9 of 11
66794	proline metabolism	81.82	9 of 11
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	factor 420 biosynthesis	80	4 of 5
66794	3-chlorocatechol degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	tyrosine metabolism	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	allantoin degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	non-pathway related	76.32	29 of 38
66794	histidine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	degradation of aromatic, nitrogen containing compounds	75	9 of 12
66794	isoprenoid biosynthesis	73.08	19 of 26
66794	d-xylose degradation	72.73	8 of 11
66794	lysine metabolism	71.43	30 of 42
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	aclacinomycin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	myo-inositol biosynthesis	70	7 of 10
66794	androgen and estrogen metabolism	68.75	11 of 16
66794	degradation of sugar alcohols	68.75	11 of 16
66794	cysteine metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	enterobactin biosynthesis	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	degradation of sugar acids	64	16 of 25
66794	ketogluconate metabolism	62.5	5 of 8
66794	gallate degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	carotenoid biosynthesis	59.09	13 of 22
66794	degradation of pentoses	57.14	16 of 28
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	daunorubicin biosynthesis	55.56	5 of 9
66794	degradation of hexoses	55.56	10 of 18
66794	ascorbate metabolism	54.55	12 of 22
66794	sulfate reduction	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	pantothenate biosynthesis	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	coenzyme M biosynthesis	50	5 of 10
66794	ribulose monophosphate pathway	50	1 of 2
66794	4-hydroxyphenylacetate degradation	50	5 of 10
66794	resorcinol degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	glycine metabolism	50	5 of 10
66794	bile acid biosynthesis, neutral pathway	47.06	8 of 17
66794	cholesterol biosynthesis	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	lipid A biosynthesis	44.44	4 of 9
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	vitamin K metabolism	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	carnitine metabolism	37.5	3 of 8
66794	IAA biosynthesis	33.33	1 of 3
66794	methanogenesis from CO2	33.33	4 of 12
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	methane metabolism	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	mevalonate metabolism	28.57	2 of 7
66794	chlorophyll metabolism	27.78	5 of 18
66794	vitamin E metabolism	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
65170	-	-	-	+	-	-	+	-	+	+	+	-	-	-	-	-	-	-	-	-	+
69317	-	-	-	+	-	+	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.
65170	-	-	-	-	-	-	+	-	+	-	-	-	-	+/-	-	-	-	-	-	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69317	not determinedn.d.	+	+	+	+	+	+	+/-	-	-	+	+/-	-	+	-	+	+	+	+/-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Lung
#Infection	#Patient	-
#Infection	#Medical environment	#Medical practice
#Host	#Human	#Male

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Latitude	Longitude
65170	bronchial lavage of 80-year-old male patient	Tennessee	USA	USA	North America					35.8601	-86.6602 35.8601/-86.6602
67841	bronchial lavage of an 80-year-old male patient	Tennessee	USA	USA	North America	tryptic soy agar	supplemented with 5% sheep blood	3-5 days	35

Taxonmaps

69479

Global distribution of 16S sequence MK089584 (>99% sequence identity) for Streptomycetaceae from Microbeatlas

Aquatic Samples	12
Soil Samples	164
Animal Samples	6
Plant Samples	19
Total Samples	201

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM325860v2 assembly for Peterkaempfera bronchialis DSM 106435	complete	GCA_003258605	2126346.6	2856716682	2126346	96.08
66792	Streptacidiphilus sp. DSM 106435	contig		2126346.3		2126346

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65170	Streptacidiphilus sp. strain 15-057A 16S ribosomal RNA gene, partial sequence	MK089584	1508		1918640
124043	Streptomyces sp. 15-057A 16S ribosomal RNA gene, partial sequence.	KR346911	1439		2126346

GC content

@ref	GC-content (mol%)	Method
65170	72.6	sequence analysis
67841	72.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptacidiphilus bronchialis DSM 106435
IMG: 2856716682

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	98.00	no
125439	motility	BacteriaNetⓘ	no	93.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptacidiphilus bronchialis DSM 106435
NCBI: GCA_003258605.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.21	yes
125438	anaerobic	anaerobicⓘ	no	97.46	yes
125438	aerobic	aerobicⓘ	yes	88.85	no
125438	spore-forming	spore-formingⓘ	yes	93.00	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	91.60	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Valid and accepted novel bacterial taxa derived from human clinical specimens and taxonomic revisions published in 2022.	Munson E, Carella A, Carroll KC.	J Clin Microbiol	10.1128/jcm.00838-23	2023
Enzymology	MftG is crucial for ethanol metabolism of mycobacteria by linking mycofactocin oxidation to respiration.	Graca AP, Nikitushkin V, Ellerhorst M, Vilhena C, Klassert TE, Starick A, Siemers M, Al-Jammal WK, Vilotijevic I, Slevogt H, Papenfort K, Lackner G.	Elife	10.7554/elife.97559	2025
Phylogeny	Streptacidiphilus bronchialis sp. nov., a ciprofloxacin-resistant bacterium from a human clinical specimen; reclassification of Streptomyces griseoplanus as Streptacidiphilus griseoplanus comb. nov. and emended description of the genus Streptacidiphilus.	Nouioui I, Klenk HP, Igual JM, Gulvik CA, Lasker BA, McQuiston JR	Int J Syst Evol Microbiol	10.1099/ijsem.0.003267	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65170	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106435
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67841	Imen Nouioui, Hans-Peter Klenk, José Mariano Igual, Christopher A. Gulvik, Brent A. Lasker, John R. McQuiston: Streptacidiphilus bronchialis sp. nov., a ciprofloxacin-resistant bacterium from a human clinical specimen; reclassification of Streptomyces griseoplanus as Streptacidiphilus griseoplanus comb. nov. and emended description of the genus Streptacidiphilus. IJSEM 69: 1047 - 1056 2019 ( DOI 10.1099/ijsem.0.003267 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69317	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Peterkaempfera bronchialis (DSM 106435, 15-057A, ATCC BAA-2934)

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