Name: Collinsella vaginalis DSM 103342
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158490

Type strain:

Species: Collinsella vaginalis

Culture col. no.: DSM 103342, CSUR 2666, Marseille-P2666

Strain history: <- F. Cadoret, Timone Hospital, Marseille, France; Marseille-P2666 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière

NCBI tax ID(s): 1870987 (species)

SI-ID 407097

DSM 103342

Special Collections

DSMZ

Section

Collinsella vaginalis DSM 103342 is an anaerobe bacterium that was isolated from vaginal sample from patient.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Coriobacteriia*
	Order	*Coriobacteriales*
	Family	*Coriobacteriaceae*
	Genus	*Collinsella*
	Species	**Collinsella vaginalis**
	Full Scientific Name (LPSN)	Collinsella vaginalis Diop et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65166]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #65166]

Culture medium growth

[Ref.: #65166]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65166]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65166]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65166]	Sample type/isolated from	vaginal sample from patient
[Ref.: #65166]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #65166]	Country	France
[Ref.: #65166]	Country ISO 3 Code	FRA
[Ref.: #65166]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Urogenital tract	#Vagina
#Host	#Human	#Female

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT598547 (>99% sequence identity) for Collinsella vaginalis subclade from Microbeatlas

Aquatic Samples	84
Soil Samples	67
Animal Samples	9332
Plant Samples	15
Total Samples	9498

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65166]	Collinsella sp. Marseille-P2666 partial 16S rRNA gene, strain Marseille-P2666	LT598547	1471	GenBank ENA	1870987 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Collinsella vaginalis Marseille-P2666	GCA_900176655	scaffold	GenBank ENA	1870987 tax ID	*
[Ref.: #66792]	Collinsella vaginalis Marseille-P2666	2791355106	draft	JGI IMG/M	1870987 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Collinsella vaginalis Marseille-P2666 NCBI: GCA_900176655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.421	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	77.356	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.228	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	80.707	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.526	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86.5	no

Availability in culture collections External links

[Ref.: #65166]

Culture collection no.

DSM 103342, CSUR 2666, Marseille-P2666

[Ref.: #111285]

SI-ID 407097

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Collinsella vaginalis sp. nov. strain Marseille-P2666(T), a new member of the Collinsella genus isolated from the genital tract of a patient suffering from bacterial vaginosis.	Diop A, Diop K, Tomei E, Armstrong N, Bretelle F, Raoult D, Fenollar F, Fournier PE	Int J Syst Evol Microbiol	10.1099/ijsem.0.003221	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65166

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103342

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111285

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407097.1 )

* These data were automatically processed and therefore are not curated

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Collinsella vaginalis Marseille-P2666

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