Profundibacter amoris (DSM 104147, JCM 31874, BAR1)

Name: Profundibacter amoris (DSM 104147, JCM 31874, BAR1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158484

Type strain

Strain Designation BAR1, strain M

Culture col. no. DSM 104147 JCM 31874 BAR1 strain M

NCBI tax ID(s) 2171755

Special Collections DSMZ JCM

History DSMZ <- S. Le Moine Bauer, Univ. Bergen, Norway; BAR1 <- S. Le Moine Bauer, Univ. Bergen, Norway; BAR1 JCM <-- H. Dahle; Center for Geobiol., Univ. of Bergen, Norway; BAR1.

Links

Profundibacter amoris BAR1 is a bacterium that was isolated from Microbial mat.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 402421

JCM 31874,DSM 104147

@ref 20215

Last LPSN update 2026-05-29 08:43:58

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodobacterales

Family Roseobacteraceae

Genus Profundibacter

Species Profundibacter amoris

Full scientific name Profundibacter amoris Le Moine Bauer et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.486

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65160	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65160	positive	growth	25
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	93.754

Spore formation

@ref	Spore formation	Confidence
125438		92.075
125439		90.065

Observation

67770

Observationquinones: Q-10

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Microbial community	#Microbial mat

Isolation

@ref	Sample type	Geographic location	Country	Latitude	Longitude
65160	Microbial mat	Northern Atlantic, Loki's castle vent field (73° 33' N, 08° 09' E)	International waters	73.55	8.15 73.55/8.15
67770	Microbial mat growing on the surface of a barite chimney at the Loki's Castle Vent Field (73° 33' N 08° 09' E)			73.55	8.15 73.55/8.15

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM354489v1 assembly for Profundibacter amoris BAR1	complete	GCA_003544895	2171755.3	2898017394	2171755	98.94

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65160	Profundibacter amoris strain BAR1 16S ribosomal RNA gene, partial sequence	MH883801	1470		2171755

GC content

@ref	GC-content (mol%)	Method
65160	57.38	sequence analysis
67770	57.38

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM354489v1 assembly for Profundibacter amoris BAR1
BV-BRC: 2171755.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.75	no
125439	gram_stain	BacteriaNetⓘ	negative	83.82	no
125439	motility	BacteriaNetⓘ	yes	46.59	no
125439	spore_formation	BacteriaNetⓘ	no	90.07	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Profundibacter amoris BAR1
NCBI: GCA_003544895.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.49	no
125438	anaerobic	anaerobicⓘ	no	90.51	no
125438	aerobic	aerobicⓘ	yes	78.58	no
125438	spore-forming	spore-formingⓘ	no	92.08	no
125438	thermophilic	thermophileⓘ	no	91.09	no
125438	flagellated	motile2+ⓘ	yes	53.02	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Profundibacter amoris gen. nov., sp. nov., a new member of the Roseobacter clade isolated from Loki's Castle Vent Field on the Arctic Mid-Ocean Ridge.	Le Moine Bauer S, Sjoberg AG, L'Haridon S, Stokke R, Roalkvam I, Steen IH, Dahle H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003234	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65160	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104147
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Profundibacter amoris (DSM 104147, JCM 31874, BAR1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003544895

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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