Name: Profundibacter amoris BAR1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158484

Type strain:

Species: Profundibacter amoris

Strain Designation: BAR1, strain M

Culture col. no.: DSM 104147, JCM 31874

Strain history: H. Dahle; Center for Geobiol., Univ. of Bergen, Norway; BAR1.

NCBI tax ID(s): 2171755 (species)

SI-ID 402421

DSM 104147

Special Collections

DSMZ
JCM

Section

Profundibacter amoris BAR1 is a mesophilic, Gram-negative bacterium that was isolated from Microbial mat.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Profundibacter*
	Species	**Profundibacter amoris**
	Full Scientific Name (LPSN)	Profundibacter amoris Le Moine Bauer et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.486

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65160]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #65160]

Culture medium growth

[Ref.: #65160]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65160]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65160]			growth	25 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.075
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65160]	Sample type/isolated from	Microbial mat
[Ref.: #65160]	Geographic location (country and/or sea, region)	Northern Atlantic, Loki's castle vent field (73° 33' N, 08° 09' E)
[Ref.: #65160]	Country	International waters
[Ref.: #65160]	Geographic location	73.5500°/8.1500°

[Ref.: #67770]	Sample type/isolated from	Microbial mat growing on the surface of a barite chimney at the Loki's Castle Vent Field (73° 33' N 08° 09' E)
[Ref.: #67770]	Geographic location	73.5500°/8.1500°
* marker position based on {}

Isolation sources categories

#Environmental

#Microbial community

#Microbial mat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65160]	Profundibacter amoris strain BAR1 16S ribosomal RNA gene, partial sequence	MH883801	1470	GenBank ENA	2171755 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Profundibacter amoris BAR1	GCA_003544895	complete	GenBank ENA	2171755 tax ID	*
[Ref.: #66792]	Rhodobacteraceae bacterium BAR1	2171755.3	complete	PATRIC	2171755 tax ID	*
[Ref.: #66792]	Profundibacter amoris BAR1	2898017394	complete	JGI IMG/M	2171755 tax ID	*

[Ref.: #65160]	GC-content	57.38 mol%	sequence analysis
[Ref.: #67770]	GC-content	57.38 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Profundibacter amoris BAR1 NCBI: GCA_003544895.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Profundibacter amoris BAR1 NCBI: GCA_003544895.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.486	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	90.505	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.579	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.075	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.092	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	53.015	no

Availability in culture collections External links

[Ref.: #65160]

Culture collection no.

DSM 104147, JCM 31874

[Ref.: #111279]

SI-ID 402421

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Profundibacter amoris gen. nov., sp. nov., a new member of the Roseobacter clade isolated from Loki's Castle Vent Field on the Arctic Mid-Ocean Ridge.	Le Moine Bauer S, Sjoberg AG, L'Haridon S, Stokke R, Roalkvam I, Steen IH, Dahle H	Int J Syst Evol Microbiol	10.1099/ijsem.0.003234	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65160

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104147

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111279

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402421.1 )

* These data were automatically processed and therefore are not curated

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