Name: Actinoalloteichus fjordicus GBA 129-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158482

Type strain:

Species: Actinoalloteichus fjordicus

Strain Designation: GBA 129-24, MP129-24

Culture col. no.: DSM 46856, CECT 9355

Strain history: <- S. B. Zotchev, Norwegian Univ. of Science and Technol., Trondheim, Norway; MP129-24

NCBI tax ID(s): 1872128 (species)

SI-ID 412341

DSM 46856

Other strains from Actinoalloteichus fjordicus

A. fjordicus ADI 127-17, MP127-17, DSM 46855, ...

Section

Actinoalloteichus fjordicus GBA 129-24 is a spore-forming, mesophilic bacterium that was isolated from marine sponge Geodia barretti.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Actinoalloteichus*
	Species	"Actinoalloteichus fjordicus"
	Full Scientific Name (LPSN)	Actinoalloteichus fjordicus Nouioui et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %97.178

Multimedia content

[Ref.: #65158]

Caption:

Medium 987+Seawater 28°C

[Ref.: #65158]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65158]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #65158]

Culture medium growth

[Ref.: #65158]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65158]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65158]			growth	28 °C

[Ref.: #65158]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.448
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65158]	Sample type/isolated from	marine sponge Geodia barretti
[Ref.: #65158]	Geographic location (country and/or sea, region)	Trondheim fjord, Tautra ridge (63° 36' N and 10° 31' E, 60 m below sea level)
[Ref.: #65158]	Country	Norway
[Ref.: #65158]	Country ISO 3 Code	NOR
[Ref.: #65158]	Continent	Europe
[Ref.: #65158]	Geographic location	63.6000°/10.5167°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF440324 (>99% sequence identity) for Actinoalloteichus from Microbeatlas

Aquatic Samples	370
Soil Samples	2648
Animal Samples	458
Plant Samples	335
Total Samples	3811

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65158]	Actinoalloteichus sp. strain DSM 46856 16S ribosomal RNA gene, partial sequence	MF440324	1399	ENA	1872128 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinoalloteichus sp. GBA129-24	1612551.5	plasmid	PATRIC	1612551 tax ID	*
[Ref.: #66792]	Actinoalloteichus sp. GBA129-24	1612551.4	complete	PATRIC	1612551 tax ID	*

[Ref.: #65158]

GC-content

70.10 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinoalloteichus sp. GBA129-24 PATRIC: 1612551.4
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinoalloteichus sp. GBA129-24 PATRIC: 1612551.4
[Ref.: #69480]	motile	no	90.82	no
[Ref.: #69480]	gram-positive	yes	89.756	no
[Ref.: #69480]	anaerobic	no	99.175	no
[Ref.: #69480]	aerobic	yes	94.246	no
[Ref.: #69480]	halophile	no	60.979	no
[Ref.: #69480]	spore-forming	yes	82.527	no
[Ref.: #69480]	thermophile	no	97.604	no
[Ref.: #69480]	glucose-util	yes	86.62	no
[Ref.: #69480]	flagellated	no	97.321	no
[Ref.: #69480]	glucose-ferment	no	87.628	no

Availability in culture collections External links

[Ref.: #65158]

Culture collection no.

DSM 46856, CECT 9355

[Ref.: #111277]

SI-ID 412341

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65158

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46856

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111277

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412341.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinoalloteichus sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Actinoalloteichus sp. GBA129-24

Actinoalloteichus sp. GBA129-24

Change proposal

Change proposal