Actinomadura craniellae (DSM 106125, CCTCC AA 2018015, LHW63021)

Name: Actinomadura craniellae (DSM 106125, CCTCC AA 2018015, LHW63021)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158480

Type strain

Strain Designation LHW63021

Culture col. no. DSM 106125 CCTCC AA 2018015 LHW63021

NCBI tax ID(s) 2231787

Special Collections DSMZ Wink compendium Literature strains

History DSMZ <- L. Li, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Dep. Department of Pharmacy, Shanghai, P.R. China; LHW63021

Links

Actinomadura craniellae LHW63021 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from marine sponge.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404996

DSM 106125

@ref 20215

Last LPSN update 2026-05-29 08:43:58

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura craniellae

Full scientific name Actinomadura craniellae Li et al. 2019

Morphology

Cell morphology

@ref	Gram stain	Confidence
67850	positive
125439		95.683
125439	positive	99.689

Colony morphology

@ref	Colony color	Medium used
69296	Fawn brown (8007)	ISP 7
69296	Khaki grey (7008)	suter without tyrosine
69296	Light ivory (1015)	ISP 3
69296	Light ivory (1015)	ISP 5
69296	Oyster white (013)	ISP 4
69296	Quartz grey (7039)	suter with tyrosine
69296	Sand yellow (1002)	ISP 2
69296	Sand yellow (1002)	ISP 6

Multicellular morphology

@ref	Complex color	Medium name	Further description	Complex name
67850	white to light yellow	ISP 3	substrat mycelium
67850	white	ISP 3	aerial mycelia and curved spore-chains with 5-8 spherical spores (1.4 µm in diameter)
69296		ISP 2		Aerial mycelium
69296		ISP 3		Aerial mycelium
69296		ISP 4		Aerial mycelium
69296		ISP 5		Aerial mycelium
69296		ISP 6		Aerial mycelium
69296		ISP 7		Aerial mycelium
69296		suter with tyrosine		Aerial mycelium
69296		suter without tyrosine		Aerial mycelium

Pigmentation

@ref	Production	Name
69296		melanin pigment
69296		soluble pigment

Multimedia

@ref:	65156
multimedia content:	DSM_106125.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_106125.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65156	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65156	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
65156	positive	growth	28
67850	positive	growth	20-40

Culture pH

@ref	Ability	Type	PH	PH range
67850	positive	growth	6-9	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67850	aerobe
125439	facultative anaerobe	98.298

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
67850	curved spore-chains with 5-8 spherical spores (1.4 µm in diameter)	spore
125439				95.999

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67850	NaCl	positive	growth	0-4 %
69296	NaCl	positive	growth	0-2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67850	16708 ChEBI	adenine	-	nitrogen source
69296	22599 ChEBI	arabinose	-	growth
67850	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
67850	17057 ChEBI	cellobiose	-	carbon source
69296	62968 ChEBI	cellulose	-	growth
67850	17108 ChEBI	D-arabinose	-	carbon source
67850	15824 ChEBI	D-fructose	-	carbon source
67850	12936 ChEBI	D-galactose	-	carbon source
67850	17634 ChEBI	D-glucose	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
67850	16899 ChEBI	D-mannitol	-	carbon source
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
67850	16024 ChEBI	D-mannose	-	carbon source
67850	16988 ChEBI	D-ribose	-	carbon source
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
67850	17924 ChEBI	D-sorbitol	-	carbon source
67850	65327 ChEBI	D-xylose	-	carbon source
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
67850	4853 ChEBI	esculin	-	hydrolysis
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69296	28757 ChEBI	fructose	-	growth
67850	16813 ChEBI	galactitol	-	carbon source
67850	5291 ChEBI	gelatin	-	hydrolysis
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
69296	17234 ChEBI	glucose	+	growth
67850	17754 ChEBI	glycerol	-	carbon source
67850	15428 ChEBI	glycine	+	nitrogen source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
67850	24741 ChEBI	hydroxyproline	-	nitrogen source
67850	17368 ChEBI	hypoxanthine	-	nitrogen source
67850	16977 ChEBI	L-alanine	-	nitrogen source
67850	30849 ChEBI	L-arabinose	-	carbon source
67850	16467 ChEBI	L-arginine	-	nitrogen source
67850	29991 ChEBI	L-aspartate	-	nitrogen source
67850	17561 ChEBI	L-cysteine	-	nitrogen source
67850	29988 ChEBI	L-glutamate	-	nitrogen source
67850	18050 ChEBI	L-glutamine	-	nitrogen source
67850	15971 ChEBI	L-histidine	+	nitrogen source
67850	15603 ChEBI	L-leucine	-	nitrogen source
67850	18019 ChEBI	L-lysine	-	nitrogen source
67850	16643 ChEBI	L-methionine	-	nitrogen source
67850	17295 ChEBI	L-phenylalanine	-	nitrogen source
67850	17203 ChEBI	L-proline	+	nitrogen source
67850	17115 ChEBI	L-serine	+	nitrogen source
67850	16857 ChEBI	L-threonine	-	nitrogen source
67850	16828 ChEBI	L-tryptophan	-	nitrogen source
67850	17895 ChEBI	L-tyrosine	-	nitrogen source
67850	16414 ChEBI	L-valine	-	nitrogen source
67850	17716 ChEBI	lactose	-	carbon source
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
67850	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69296	37684 ChEBI	mannose	-	growth
67850	28053 ChEBI	melibiose	-	carbon source
67850		milk	-	assimilation
67850	17268 ChEBI	myo-inositol	-	carbon source
69296	17268 ChEBI	myo-inositol	-	growth
67850	17632 ChEBI	nitrate	+	reduction
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69296	16634 ChEBI	raffinose	-	growth
69296	26546 ChEBI	rhamnose	+	growth
67850	32954 ChEBI	sodium acetate	-	carbon source
67850	53258 ChEBI	sodium citrate	-	carbon source
67850	50144 ChEBI	sodium pyruvate	+	carbon source
67850	28017 ChEBI	starch	-	hydrolysis
67850	17992 ChEBI	sucrose	-	carbon source
69296	17992 ChEBI	sucrose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
67850	27082 ChEBI	trehalose	+	carbon source
67850	53424 ChEBI	tween 20	+	hydrolysis
67850	53423 ChEBI	tween 40	+	hydrolysis
67850	53425 ChEBI	tween 60	+	hydrolysis
67850	53426 ChEBI	tween 80	+	hydrolysis
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
67850	15318 ChEBI	xanthine	-	nitrogen source
67850	17151 ChEBI	xylitol	-	carbon source
69296	18222 ChEBI	xylose	-	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67850	16136 ChEBI	hydrogen sulfide
67850	89634 ChEBI	melanin

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
67850	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

Fatty acid profile

Metadata FA analysis

@ref

67850

Fatty acid	Percentage
C16:0 iso	27
C18:0 iso	11.1
10-methyl C17:0	10.3
C18:1 w9c	10.2
C17:1 w8c	9.8
C16:0	7.3
C17:0	5.9
10-methyl C18:0, TBSA	5.9
C18:0	3.8
C19:1 w9c / C19:1 w11c	2.5
C16:1 w7c / C16:1 w6c	2.3
C16:1 iso G	1.7
10-methyl C19:0	1.2
C18:1 w7c	0.9

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69296	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69296	not determinedn.d.	+/-	+	+/-	+/-	+	+/-	-	-	-	-	+/-	-	-	-	+/-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
65156	marine sponge	Xisha Islands, Hainan Province (16° 45' N, 112° 21' E)	China	CHN	Asia	16.75	112.35 16.75/112.35
67850	marine sponge sample, coral reef at 20m depth	Xisha Islands, South China Sea	China	CHN	Asia	16.75	112.35 16.75/112.35	Streptomyces isolation medium	containing 3 % sea salt (w/v), 50 mg l-1 cycloheximide and 25 mg l-1 nalidixic acid.	4-12 weeks	28	After being washed in sterile artificial sea water three times, the tissue was cut, ground and spread on Streptomyces isolation medium and incubated at 28°C for 4-12 weeks.

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67850	ASM328964v1 assembly for Actinomadura craniellae LHW63021	contig	GCA_003289645	2231787.3	2856664274	2231787	65.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67850	Actinomadura craniellae 16S ribosomal RNA gene, partial sequence	MG200154	1433		2231787

GC content

@ref	GC-content (mol%)	Method
67850	72	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM328964v1 assembly for Actinomadura craniellae LHW63021
NCBI: GCA_003289645

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	98.30	no
125439	gram_stain	BacteriaNetⓘ	positive	99.69	no
125439	spore_formation	BacteriaNetⓘ	yes	96.00	no
125439	motility	BacteriaNetⓘ	no	95.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura craniellae sp. nov., isolated from a marine sponge in the South China Sea.	Li L, Xu QH, Wang XT, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003295	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65156	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106125
#67850	Lei Li, Qi-hang Xu, Xiao-tian Wang, Hou-wen Lin, Yan-hua Lu: Actinomadura craniellae sp. nov., isolated from a marine sponge in the South China Sea. IJSEM 69: 1207 - 1212 2019 ( DOI 10.1099/ijsem.0.003295 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69296	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura craniellae (DSM 106125, CCTCC AA 2018015, LHW63021)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Fatty acid profile

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003289645

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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