Name: Nitrospira sp. ENR4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158460

Type strain:

Species: Nitrospira sp.

Strain Designation: ENR4

Culture col. no.: DSM 105286, JCM 31988

Strain history: C. Sedlacek; Div. of Microb. Ecol., Univ. of Vienna, Austria <-- M. Wagner and H. Daims; Div. of Microb. Ecol., Univ. of Vienna, Austria <-- E. Lebedeva; Winogradsky Inst. of Microbiol., RAS, Russia; ENR4.

NCBI tax ID(s): 70125 (species)

SI-ID 405458

DSM 105286

Special Collections

DSMZ
JCM

Section

When using BacDive for research please cite our paper

Nitrospira sp. ENR4 is a mesophilic bacterium that was isolated from biofilm of oil exploration well pipe.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Nitrospirota*
	Class	*Nitrospiria*
	Order	*Nitrospirales*
	Family	*Nitrospiraceae*
	Genus	*Nitrospira*
	Full Scientific Name (LPSN)	Nitrospira Watson et al. 1986

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %95.098

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65136]

Culture medium

NITROSPIRA INOPINATA (DSMZ Medium 1690)

[Ref.: #65136]

Culture medium growth

[Ref.: #65136]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65136]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65136]			growth	42 °C
[Ref.: #67770]			growth	42 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65136]	Sample type/isolated from	biofilm of oil exploration well pipe
[Ref.: #65136]	Geographic location (country and/or sea, region)	oil exploration well pipe (43° 22' 45'' N, 43° 43' 26.1'' E)
[Ref.: #65136]	Country	Russia
[Ref.: #65136]	Country ISO 3 Code	RUS
[Ref.: #65136]	Continent	Europe
[Ref.: #65136]	Geographic location	43.3792°/43.7239°

[Ref.: #67770]	Sample type/isolated from	Microbial biofilm developing on the walls of a pipe under the flow of hot water (56°C, pH 7.5) raised from a 1,200 m deep oil exploration well
[Ref.: #67770]	Geographic location (country and/or sea, region)	Aushiger, North Caucasus
[Ref.: #67770]	Country	Russia
[Ref.: #67770]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Biofilm	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nitrospira sp. ENR4 genome assembly NiCh1, chromosome : 1	GCA_001458695	complete	GenBank ENA	1715989 tax ID
[Ref.: #66792]	Nitrospira sp. ENR4	1715989.4	complete	PATRIC	1715989 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nitrospira sp. ENR4 PATRIC: 1715989.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	95.098	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	74.647	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	80.817	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	54.701	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	72.131	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	55.791	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nitrospira sp. ENR4 PATRIC: 1715989.4
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	56.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	63
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	63.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	76.1

Availability in culture collections External links

[Ref.: #65136]

Culture collection no.

DSM 105286, JCM 31988

[Ref.: #111258]

SI-ID 405458

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65136

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105286

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#111258

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405458.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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