Name: Listeria thailandensis CLIP2015/00305
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158452

Type strain:

Species: Listeria thailandensis

Strain Designation: CLIP2015/00305

Culture col. no.: DSM 107638, CIP 111635, CLIP 2015/00305

Strain history: CIP <- 2018, A. Leclercq, Inst. Pasteur, Paris, France: strain CLIP 2015/00305 <- bioMérieux

NCBI tax ID(s): 2268407 (species)

SI-ID 403454

DSM 107638, CIP 111635

Section

Listeria thailandensis CLIP2015/00305 is a facultative aerobe, mesophilic, Gram-positive bacterium that was isolated from fried chicken.

Gram-positive
rod-shaped
facultative aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Listeriaceae*
	Genus	*Listeria*
	Species	**Listeria thailandensis**
	Full Scientific Name (LPSN)	Listeria thailandensis Leclercq et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67781]	Gram stain	positive
[Ref.: #123494]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #67781]	Cell shape	rod-shaped
[Ref.: #123494]	Cell shape	rod-shaped

[Ref.: #67781]	Motility	no

[Ref.: #67781]	Type of hemolysis	gamma
[Ref.: #67781]	Colony size	0.5-1 mm
[Ref.: #67781]	Cultivation medium used	Brain-heart-infusion agar

[Ref.: #67781]	Colony size	2 mm
[Ref.: #67781]	Colony color	grey-green in colour with a black sunken centre and a black halo
[Ref.: #67781]	Cultivation medium used	Palcam agar

[Ref.: #67781]	Colony color	blue
[Ref.: #67781]	Cultivation medium used	ALOA agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

BHI MEDIUM (DSMZ Medium 215)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

CIP Medium 29

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #65128]	growth	37 °C
[Ref.: #67781]	growth	22-42 °C
[Ref.: #67781]	optimum	30-37 °C

[Ref.: #65128]	Temperature range	mesophilic
[Ref.: #67781]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67781]

Oxygen tolerance

facultative aerobe

[Ref.: #67781]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.941
[Ref.: #69481]	Ability of spore formation	yes Confidence in %99

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67781]	amygdalin ChEBI	+	builds acid from
[Ref.: #67781]	arbutin ChEBI	+	builds acid from
[Ref.: #67781]	cellobiose ChEBI	+	builds acid from
[Ref.: #67781]	D-arabinose ChEBI	-	builds acid from
[Ref.: #67781]	D-arabitol ChEBI	+	builds acid from
[Ref.: #67781]	D-fructose ChEBI	+	builds acid from
[Ref.: #67781]	D-fucose ChEBI	-	builds acid from
[Ref.: #67781]	D-galactose ChEBI	-	builds acid from
[Ref.: #67781]	D-glucose ChEBI	+	builds acid from
[Ref.: #67781]	D-lyxose ChEBI	-	builds acid from
[Ref.: #67781]	D-mannitol ChEBI	-	builds acid from
[Ref.: #67781]	D-mannose ChEBI	+	builds acid from
[Ref.: #67781]	D-ribose ChEBI	+	builds acid from
[Ref.: #67781]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #67781]	D-tagatose ChEBI	+	builds acid from
[Ref.: #67781]	D-xylose ChEBI	+	builds acid from
[Ref.: #67781]	erythritol ChEBI	-	builds acid from
[Ref.: #67781]	esculin ferric citrate	+	builds acid from
[Ref.: #67781]	galactitol ChEBI	-	builds acid from
[Ref.: #67781]	gentiobiose ChEBI	+	builds acid from
[Ref.: #67781]	glycerol ChEBI	+	builds acid from
[Ref.: #67781]	glycogen ChEBI	-	builds acid from
[Ref.: #67781]	inulin ChEBI	-	builds acid from
[Ref.: #67781]	L-arabinose ChEBI	-	builds acid from
[Ref.: #67781]	L-arabitol ChEBI	-	builds acid from
[Ref.: #67781]	L-fucose ChEBI	-	builds acid from
[Ref.: #67781]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #67781]	L-sorbose ChEBI	-	builds acid from
[Ref.: #67781]	L-xylose ChEBI	-	builds acid from
[Ref.: #67781]	lactose ChEBI	-	builds acid from
[Ref.: #67781]	maltose ChEBI	-	builds acid from
[Ref.: #67781]	melezitose ChEBI	-	builds acid from
[Ref.: #67781]	melibiose ChEBI	-	builds acid from
[Ref.: #67781]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #67781]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #67781]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #67781]	myo-inositol ChEBI	+	builds acid from
[Ref.: #67781]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #67781]	nitrate ChEBI	+	reduction
[Ref.: #67781]	nitrite ChEBI	-	reduction
[Ref.: #67781]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #67781]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #67781]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #67781]	raffinose ChEBI	-	builds acid from
[Ref.: #67781]	ribitol ChEBI	-	builds acid from
[Ref.: #67781]	salicin ChEBI	+	builds acid from
[Ref.: #67781]	starch ChEBI	-	builds acid from
[Ref.: #67781]	sucrose ChEBI	-	builds acid from
[Ref.: #67781]	trehalose ChEBI	+	builds acid from
[Ref.: #67781]	turanose ChEBI	-	builds acid from
[Ref.: #67781]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67781]		acetoin ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #67781]		acetoin ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #67781]		catalase	+	1.11.1.6
[Ref.: #67781]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65128]	Sample type/isolated from	fried chicken
[Ref.: #65128]	Country	Thailand
[Ref.: #65128]	Country ISO 3 Code	THA
[Ref.: #65128]	Continent	Asia

[Ref.: #67781]	Sample type/isolated from	fried chicken sample
[Ref.: #67781]	Sampling date	2015-03
[Ref.: #67781]	Country	Thailand
[Ref.: #67781]	Country ISO 3 Code	THA
[Ref.: #67781]	Continent	Asia

[Ref.: #123494]	Sample type/isolated from	Animal, Fried chicken
[Ref.: #123494]	Country	Thailand
[Ref.: #123494]	Country ISO 3 Code	THA
[Ref.: #123494]	Continent	Asia
[Ref.: #123494]	Isolation date	2015-03-26
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Meat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65128]	Listeria thailandensis strain CLIP 2015/00305 16S ribosomal RNA gene, partial sequence	MK014484	1547	ENA	2268407 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67781]	Listeria thailandensis lm1	GCA_900576925	scaffold	GenBank	2268407 tax ID

[Ref.: #65128]	GC-content	40.3 mol%
[Ref.: #67781]	GC-content	40.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Listeria thailandensis lm1 NCBI: GCA_900576925.1
[Ref.: #69481]	spore-forming	yes	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Listeria thailandensis lm1 NCBI: GCA_900576925.1
[Ref.: #69480]	flagellated	no	94.439	yes
[Ref.: #69480]	gram-positive	yes	95.205	yes
[Ref.: #69480]	anaerobic	no	93.863	yes
[Ref.: #69480]	aerobic	no	92.192	yes
[Ref.: #69480]	halophile	yes	79.188	no
[Ref.: #69480]	spore-forming	no	89.815	yes
[Ref.: #69480]	thermophile	no	98.635	no
[Ref.: #69480]	glucose-util	yes	87.927	no
[Ref.: #69480]	motile	no	87.813	no
[Ref.: #69480]	glucose-ferment	yes	69.443	no

Availability in culture collections External links

[Ref.: #65128]

Culture collection no.

DSM 107638, CIP 111635, CLIP 2015/00305

[Ref.: #111253]

SI-ID 403454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Listeria thailandensis sp. nov.	Leclercq A, Moura A, Vales G, Tessaud-Rita N, Aguilhon C, Lecuit M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003097	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65128

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107638

#67781

Alexandre Leclercq, Alexandra Moura, Guillaume Vales, Nathalie Tessaud-Rita, Christine Aguilhon, Marc Lecuit: Listeria thailandensis sp. nov.. IJSEM 69: 74 - 81 2019 ( DOI 10.1099/ijsem.0.003097 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111253

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403454.1 )

#123494 Collection of Institut Pasteur ; Curators of the CIP; CIP 111635
* These data were automatically processed and therefore are not curated

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Listeria thailandensis lm1

Listeria thailandensis lm1

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