Polynucleobacter paneuropaeus (DSM 103454, CIP 111323, MG-25-Pas1-D2)

Name: Polynucleobacter paneuropaeus (DSM 103454, CIP 111323, MG-25-Pas1-D2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158449

Type strain

Strain Designation MG-25-Pas1-D2

Culture col. no. DSM 103454 CIP 111323 MG-25-Pas1-D2

NCBI tax ID(s) 2527775

Special Collections DSMZ CIP Literature strains

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Polynucleobacter paneuropaeus MG-25-Pas1-D2 is an aerobe, chemoorganoheterotroph, mesophilic prokaryote that forms circular colonies and was isolated from freshwater lake.

rod-shaped colony-forming aerobe chemoorganoheterotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 401939

DSM 103454,CIP 111323

@ref 20215

Last LPSN update 2025-12-16 10:08:02

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Burkholderiaceae

Genus Polynucleobacter

Species Polynucleobacter paneuropaeus

Full scientific name Polynucleobacter paneuropaeus Hoetzinger et al. 2019

BacDive ID	Other strains from **Polynucleobacter paneuropaeus** (5)	Type strain
158448	P. paneuropaeus FUKU-NW11, DSM 103425
158450	P. paneuropaeus MWH-CNW20-3, DSM 103490
158451	P. paneuropaeus MWH-Creno-4B4, DSM 103504
175395	P. paneuropaeus MWH-UK1W16, DSM 24086
175396	P. paneuropaeus P1-05-14, MWH-P1-05-14, DSM 103469

Morphology

Cell morphology

@ref	Cell length	Cell width	Cell shape
67788	0.6-1.2 µm	0.3-0.6 µm	rod-shaped
125439
121528			rod-shaped

Colony morphology

@ref	Colony color	Colony shape	Medium used
67788	non-pigmented	circular	nutrient broth soyotone yeast agar

Multimedia

@ref:	65125
multimedia content:	DSM_103454.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_103454.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65125	REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
121528	CIP Medium 566		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
65125	positive	growth	28	mesophilic
67788	positive	growth	5-31

Physiology and metabolism

Oxygen tolerance

67788

Oxygen toleranceaerobe

Nutrition type

67788

Typechemoorganoheterotroph

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
67788	NaCl	positive	growth	0-0.4 %(w/v)

Observation

@ref	Observation
67788	Weak anaerobic growth was observed in one strain.
67788	Some but not all strains encode a putative system for anoxygenic photosynthesis.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
67788	39150 ChEBI	4-oxopentanoate	+/-	assimilation
67788	30089 ChEBI	acetate	+	assimilation
67788	16947 ChEBI	citrate	+/-	assimilation
67788	15824 ChEBI	D-fructose	+/-	assimilation
67788	12936 ChEBI	D-galactose	-	assimilation
67788	18024 ChEBI	D-galacturonic acid	+/-	assimilation
67788	17634 ChEBI	D-glucose	-	assimilation
67788	62318 ChEBI	D-lyxose	+/-	assimilation
67788	16024 ChEBI	D-mannose	+	assimilation
67788	17924 ChEBI	D-sorbitol	-	assimilation
67788	29806 ChEBI	fumarate	+	assimilation
67788	29987 ChEBI	glutamate	+/-	assimilation
67788	29805 ChEBI	glycolate	+	assimilation
67788	36655 ChEBI	glyoxylate	+	assimilation
67788	16977 ChEBI	L-alanine	-	assimilation
67788	17196 ChEBI	L-asparagine	-	assimilation
67788	29991 ChEBI	L-aspartate	-	assimilation
67788	17561 ChEBI	L-cysteine	+	assimilation
67788	18287 ChEBI	L-fucose	-	assimilation
67788	15971 ChEBI	L-histidine	-	assimilation
67788	15603 ChEBI	L-leucine	-	assimilation
67788	17115 ChEBI	L-serine	-	assimilation
67788	25115 ChEBI	malate	+	assimilation
67788	15792 ChEBI	malonate	+/-	assimilation
67788	30623 ChEBI	oxalate	+/-	assimilation
67788	16452 ChEBI	oxaloacetate	+	assimilation
67788	17272 ChEBI	propionate	+/-	assimilation
67788	15361 ChEBI	pyruvate	+	assimilation
67788	30031 ChEBI	succinate	+	assimilation

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65125	freshwater lake	Pasvik Valley, Russevatn (69.45° N, 29.9° E)	Norway	NOR	Europe
67788	freshwater sample (Altitude 45m; pH 5.5-5.9; Cond. 15.4-28.8 µS cm-1)	Lake Russevatn	Norway	NOR	Europe
121528	Environment, Freshwater, pond	Lake Russevatn, Pasvik valey near Kirkeness	Norway	NOR	Europe

Taxonmaps

69479

Global distribution of 16S sequence MH492629 (>99% sequence identity) for Polynucleobacter from Microbeatlas

Aquatic Samples	34169
Soil Samples	1815
Animal Samples	6310
Plant Samples	555
Total Samples	42849

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
121528	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Polynucleobacter paneuropaeus MG-25-Pas1-D2	complete	2770939595	2527775	99.76
67788	ASM326123v1 assembly for Polynucleobacter paneuropaeus MG-25-Pas1-D2	chromosome	2808606699	2527775	82.17

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65125	Polynucleobacter paneuropaeus strain MG-25-Pas1-D2 16S ribosomal RNA gene, partial sequence	MH492629	1537		2527775

GC content

@ref	GC-content (mol%)	Method
67788	45.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Polynucleobacter paneuropaeus MG-25-Pas1-D2
IMG: 2808606699

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	77.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	85.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north-south cross-section across Europe.	Hoetzinger M, Schmidt J, Pitt A, Koll U, Lang E, Hahn MW	Int J Syst Evol Microbiol	10.1099/ijsem.0.003130	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65125	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103454
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67788	Matthias Hoetzinger, Johanna Schmidt, Alexandra Pitt, Ulrike Koll, Elke Lang, Martin W. Hahn: Polynucleobacter paneuropaeus sp. nov., characterized by six strains isolated from freshwater lakes located along a 3000 km north-south cross-section across Europe. IJSEM 69: 203 - 213 2019 ( DOI 10.1099/ijsem.0.003130 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121528	Collection of Institut Pasteur ; Curators of the CIP; CIP 111323
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polynucleobacter paneuropaeus (DSM 103454, CIP 111323, MG-25-Pas1-D2)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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